Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa010803 Carpinus fangiana HOM05D003606 ORTHO05D004650 4.5e-179 631.7 405 100.0
Haze_03155 Corylus avellana HOM05D003606 ORTHO05D004650 5.6e-169 598.2 405 95.3
CiPaw.05G162700 Carya illinoinensis HOM05D003606 ORTHO05D004650 3.2e-156 555.8 405 89.1
Atru.chr11.2590 Acer truncatum HOM05D003606 ORTHO05D004650 3.5e-155 552.4 397 90.9
Ciclev10015115m.g Citrus clementina HOM05D003606 ORTHO05D004650 1.3e-154 550.4 397 77.3
CiPaw.05G024300 Carya illinoinensis HOM05D003606 ORTHO05D004650 3.9e-154 548.9 405 89.6
Actinidia02534 Actinidia chinensis HOM05D000009 ORTHO05D004650 1.5e-153 547.0 405 85.2
Cpa.g.sc19.249 Carica papaya HOM05D003606 ORTHO05D004650 5.6e-153 545.0 397 80.1
Potri.009G058000 Populus trichocarpa HOM05D003606 ORTHO05D004650 1.2e-152 543.9 392 90.3
MELO3C023992.2 Cucumis melo HOM05D003606 ORTHO05D004650 2.8e-152 542.7 404 87.6
CsaV3_3G031990 Cucumis sativus L. HOM05D003606 ORTHO05D004650 2.8e-152 542.7 404 87.6
Nn5g28763 Nelumbo nucifera HOM05D003606 ORTHO05D004650 2.8e-152 542.7 405 81.0
Sabra09G0042600 Salix brachista HOM05D003606 ORTHO05D004650 4.7e-152 542.0 392 86.2
Gohir.A08G142700 Gossypium hirsutum HOM05D003606 ORTHO05D004650 6.2e-152 541.6 405 89.1
Gohir.D08G163700 Gossypium hirsutum HOM05D003606 ORTHO05D004650 8.1e-152 541.2 405 89.1
Gorai.004G170600 Gossypium raimondii HOM05D003606 ORTHO05D004650 1.8e-151 540.0 405 88.9
Dinv09318 Davidia involucrata HOM05D003606 ORTHO05D004650 8.9e-151 537.7 405 87.4
Eucgr.G03357 Eucalyptus grandis HOM05D003606 ORTHO05D004650 4.4e-150 535.4 405 87.4
HanXRQChr17g0563081 Helianthus annuus HOM05D003606 ORTHO05D004650 7.6e-150 534.6 405 80.2
Cc02_g29020 Coffea canephora HOM05D003606 ORTHO05D004650 2.2e-149 533.1 402 86.6
Thecc.01G407200 Theobroma cacao HOM05D003606 ORTHO05D004650 2.2e-149 533.1 405 87.4
COL.COLO4_04879 Corchorus olitorius HOM05D003606 ORTHO05D004650 2.9e-149 532.7 405 86.7
Duzib138G0203 Durio zibethinus HOM05D003606 ORTHO05D004650 2.9e-149 532.7 405 87.4
Rhsim07G0058400 Rhododendron simsii HOM05D003606 ORTHO05D004650 2.9e-149 532.7 406 87.7
TWI32G0899 Tripterygium wilfordii HOM05D003606 ORTHO05D004650 3.7e-149 532.3 405 85.9
Lj5g0022697 Lotus japonicus HOM05D003606 ORTHO05D004650 8.4e-149 531.2 392 88.5
Manes.10G139000 Manihot esculenta HOM05D003606 ORTHO05D004650 3.2e-148 529.3 392 88.3
Phvul.004G092500 Phaseolus vulgaris HOM05D003606 ORTHO05D004650 4.1e-148 528.9 405 85.9
Dinv43413 Davidia involucrata HOM05D003606 ORTHO05D004650 5.4e-148 528.5 405 86.7
GSVIVG01032166001 Vitis vinifera HOM05D003606 ORTHO05D004650 1.2e-147 527.3 405 86.4
Prupe.2G020500 Prunus persica HOM05D003606 ORTHO05D004650 1.6e-147 526.9 405 85.9
Glyma.16G165100 Glycine max HOM05D003606 ORTHO05D004650 3.5e-147 525.8 407 85.3
Nitab4.5_0001284g0090 Nicotiana tabacum HOM05D003606 ORTHO05D004650 3.5e-147 525.8 405 76.8
TWI34G0860 Tripterygium wilfordii HOM05D003606 ORTHO05D004650 3.5e-147 525.8 405 86.9
CDE02G3858 Ceratophyllum demersum HOM05D003606 ORTHO05D004650 6.0e-147 525.0 405 85.2
Sed0024972 Sechium edule HOM05D003606 ORTHO05D004650 6.0e-147 525.0 400 87.0
MSTRG.2635 Avicennia marina HOM05D003606 ORTHO05D004650 7.8e-147 524.6 392 86.2
Lalb_Chr21g0315701 Lupinus albus HOM05D003606 ORTHO05D004650 1.0e-146 524.2 400 86.5
PSO675G6796 Papaver somniferum HOM05D003606 ORTHO05D004650 1.0e-146 524.2 405 79.8
vmacro13693 Vaccinium macrocarpon HOM05D003606 ORTHO05D004650 1.0e-146 524.2 403 86.8
Sc23g0005910 Simmondsia chinensis HOM05D003606 ORTHO05D004650 1.3e-146 523.9 394 85.8
VMungo0464G1676 Vigna mungo HOM05D003606 ORTHO05D004650 1.7e-146 523.5 404 85.4
Glyma.02G080600 Glycine max HOM05D003606 ORTHO05D004650 3.0e-146 522.7 405 85.7
HanXRQChr16g0524861 Helianthus annuus HOM05D003606 ORTHO05D004650 5.1e-146 521.9 405 83.7
PSO541G2647 Papaver somniferum HOM05D003606 ORTHO05D004650 9.6e-145 517.7 404 79.0
Lj3A990T71 Lonicera japonica HOM05D003606 ORTHO05D004650 1.2e-144 517.3 405 83.7
RcHm_v2.0_Chr1g0317321 Rosa chinensis HOM05D003606 ORTHO05D004650 1.2e-144 517.3 394 77.7
Solyc03g112530.3 Solanum lycopersicum HOM05D003606 ORTHO05D004650 2.8e-144 516.2 408 78.4
Sopen03g031590 Solanum pennellii HOM05D003606 ORTHO05D004650 2.8e-144 516.2 408 78.4
PGSC0003DMG400018107 Solanum tuberosum HOM05D003606 ORTHO05D004650 4.7e-144 515.4 408 78.4
ECA234G3512 Erigeron canadensis HOM05D003606 ORTHO05D004650 8.1e-144 514.6 405 79.3
THA.LOC104819092 Tarenaya hassleriana HOM05D003606 ORTHO05D004650 1.1e-143 514.2 400 73.0
SalBow4G1900 Salvia bowleyana HOM05D003606 ORTHO05D004650 1.8e-143 513.5 409 70.9
Migut.D00412 Erythranthe guttata HOM05D003606 ORTHO05D004650 2.4e-143 513.1 401 82.8
SGA_v2.0_scaffold1G00601 Striga asiatica HOM05D003606 ORTHO05D004650 5.2e-143 511.9 399 84.0
CAN.G338.7 Capsicum annuum HOM05D003606 ORTHO05D004650 2.0e-142 510.0 406 81.3
PGR031G1688 Punica granatum HOM05D003606 ORTHO05D004650 4.4e-142 508.8 404 81.2
AUR62029807 Chenopodium quinoa HOM05D003606 ORTHO05D004650 5.8e-142 508.4 422 71.1
DCAR_003761 Daucus carota HOM05D003606 ORTHO05D004650 2.2e-141 506.5 405 83.7
AUR62023088 Chenopodium quinoa HOM05D003606 ORTHO05D004650 2.9e-141 506.1 422 70.9
Ca_19553_v3 Cicer arietinum L. HOM05D003606 ORTHO05D004650 2.9e-141 506.1 408 73.5
Medtr1g054300 Medicago truncatula HOM05D003606 ORTHO05D004650 6.4e-141 505.0 400 74.8
MD17G1287700 Malus domestica HOM05D003606 ORTHO05D004650 8.4e-141 504.6 405 84.2
MD02G1305600 Malus domestica HOM05D003606 ORTHO05D004650 9.3e-140 501.1 404 77.0
Aqoxy2G00153 Aquilegia oxysepala HOM05D003606 ORTHO05D004650 3.5e-139 499.2 392 83.9
TPR.G14490 Trifolium pratense HOM05D003606 ORTHO05D004650 1.0e-138 497.7 391 74.7
ClCG10G012220 Citrullus lanatus HOM05D003606 ORTHO05D004650 2.3e-138 496.5 419 78.8
FvH4_7g01500 Fragaria vesca HOM05D003606 ORTHO05D004650 3.0e-138 496.1 391 77.2
FAN01G0800 Fragaria x ananassa HOM05D003606 ORTHO05D004650 3.0e-138 496.1 406 75.4
FAN03G2659 Fragaria x ananassa HOM05D003606 ORTHO05D004650 3.0e-138 496.1 405 75.1
FAN10G3084 Fragaria x ananassa HOM05D003606 ORTHO05D004650 6.6e-138 495.0 405 74.8
QL06p005538 Quercus lobata HOM05D003606 ORTHO05D004650 6.6e-138 495.0 366 89.1
Lsat_1_v5_gn_4_31941 Lactuca sativa HOM05D003606 ORTHO05D004650 8.7e-138 494.6 405 82.2
SGA_v2.0_scaffold138G35254 Striga asiatica HOM05D003606 ORTHO05D004650 2.5e-137 493.0 403 80.1
FAN06G2132 Fragaria x ananassa HOM05D003606 ORTHO05D004650 5.6e-137 491.9 406 70.4
Psat6g110240 Pisum sativum HOM05D003606 ORTHO05D004650 9.6e-137 491.1 404 72.5
Ah.10g038660 Amaranthus hybridus HOM05D003606 ORTHO05D004650 1.1e-135 487.6 409 71.6
ATR0626G036 Amborella trichopoda HOM05D003606 ORTHO05D004650 1.8e-135 486.9 392 69.9
arahy.Tifrunner.gnm1.ann1.F9F3MK Arachis hypogaea HOM05D003606 ORTHO05D004650 1.6e-131 473.8 406 80.8
arahy.Tifrunner.gnm1.ann1.V59V4E Arachis hypogaea HOM05D003606 ORTHO05D004650 1.6e-131 473.8 406 80.0
arahy.Tifrunner.gnm1.ann1.GAUK41 Arachis hypogaea HOM05D003606 ORTHO05D004650 2.7e-131 473.0 406 80.5
Os11g0594200 Oryza sativa ssp. japonica HOM05D003606 ORTHO05D004650 4.6e-131 472.2 401 79.1
Aa31LG3G9060 Aethionema arabicum HOM05D003606 ORTHO05D004650 1.3e-130 470.7 390 78.2
BcaB05g21983 Brassica carinata HOM05D003606 ORTHO05D004650 1.7e-130 470.3 400 76.2
BcaC03g14497 Brassica carinata HOM05D003606 ORTHO05D004650 2.3e-130 469.9 401 75.8
C02p19350 Brassica napus HOM05D003606 ORTHO05D004650 2.3e-130 469.9 401 75.8
BolC2t08070H Brassica oleracea HOM05D003606 ORTHO05D004650 2.3e-130 469.9 401 75.8
Thhalv10013442m.g Eutrema salsugineum HOM05D003606 ORTHO05D004650 3.0e-130 469.5 392 77.3
TAR633G2243 Trochodendron aralioides HOM05D003606 ORTHO05D004650 6.6e-130 468.4 524 63.2
Sp6g14980 Schrenkiella parvula HOM05D003606 ORTHO05D004650 1.9e-129 466.8 389 77.9
Nitab4.5_0012005g0010 Nicotiana tabacum HOM05D003606 ORTHO05D004650 7.3e-129 464.9 392 71.9
Hund21610 Selenicereus undatus HOM05D003606 ORTHO05D004650 7.3e-129 464.9 434 66.8
AT5G52820 Arabidopsis thaliana HOM05D003606 ORTHO05D004650 3.6e-128 462.6 396 76.5
A02p11600 Brassica napus HOM05D003606 ORTHO05D004650 4.8e-128 462.2 401 75.1
BraA02t06222Z Brassica rapa HOM05D003606 ORTHO05D004650 4.8e-128 462.2 401 75.1
Manes.07G008500 Manihot esculenta HOM05D003606 ORTHO05D004650 4.8e-128 462.2 392 81.6
Carub.0008s1298 Capsella rubella HOM05D003606 ORTHO05D004650 6.2e-128 461.8 390 77.7
Peaxi162Scf00089g01530 Petunia axillaris HOM05D003606 ORTHO05D004650 6.2e-128 461.8 405 78.0
Zm00001eb297740 Zea mays HOM05D003606 ORTHO05D004650 1.4e-127 460.7 388 79.6
AL8G27260 Arabidopsis lyrata HOM05D003606 ORTHO05D004650 1.8e-127 460.3 396 76.0
CARHR265750 Cardamine hirsuta HOM05D003606 ORTHO05D004650 3.4e-126 456.1 389 71.7
Oeu025828.1 Olea europaea HOM05D003606 ORTHO05D004650 4.5e-126 455.7 515 63.5
Os10g0104500 Oryza sativa ssp. japonica HOM05D003606 ORTHO05D004650 9.9e-126 454.5 401 76.8
arahy.Tifrunner.gnm1.ann1.ZXEF1Z Arachis hypogaea HOM05D003606 ORTHO05D004650 1.1e-124 451.1 406 67.7
SHI00285 Sapria himalayana HOM05D003606 ORTHO05D004650 4.8e-120 435.6 426 62.9
SEGI_00890 Sequoiadendron giganteum HOM05D003606 ORTHO05D004650 1.1e-119 434.5 407 67.8
BcaB08g35635 Brassica carinata HOM05D003606 ORTHO05D004650 1.5e-118 430.6 401 59.4
CANSAT01G2566 Cannabis sativa HOM05D003606 ORTHO05D004650 2.7e-115 419.9 389 73.0
Thhalv10025051m.g Eutrema salsugineum HOM05D003606 ORTHO05D004650 1.3e-114 417.5 406 60.1
AagrBONN_evm.TU.Sc2ySwM_344.4930 Anthoceros agrestis HOM05D003606 ORTHO05D004650 6.9e-111 405.2 396 66.7
Pp3c1_35350 Physcomitrium patens HOM05D003606 ORTHO05D004650 1.0e-109 401.4 392 68.4
BcaNung04849 Brassica carinata HOM05D003606 ORTHO05D004650 2.9e-109 399.8 406 59.4
BolC9t59770H Brassica oleracea HOM05D003606 ORTHO05D004650 2.9e-109 399.8 406 59.4
BolC7t45366H Brassica oleracea HOM05D003606 ORTHO05D004650 1.9e-108 397.1 394 59.6
C09p70260 Brassica napus HOM05D003606 ORTHO05D004650 2.5e-108 396.7 412 58.5
PSO541G4704 Papaver somniferum HOM05D003606 ORTHO05D004650 1.6e-107 394.0 382 62.0
BcaNung04664 Brassica carinata HOM05D003606 ORTHO05D004650 1.3e-106 391.0 393 60.1
SGA_v2.0_scaffold90G27689 Striga asiatica HOM05D003606 ORTHO05D004650 3.0e-106 389.8 391 73.7
BcaC04g20537 Brassica carinata HOM05D003606 ORTHO05D004650 5.1e-106 389.0 401 55.6
BcaC06g33533 Brassica carinata HOM05D003606 ORTHO05D004650 8.7e-106 388.3 416 57.0
unitig_26.g10141 Utricularia gibba HOM05D003606 ORTHO05D004650 1.6e-104 384.0 407 59.2
Mapoly0082s0085 Marchantia polymorpha HOM05D003606 ORTHO05D004650 1.1e-103 381.3 392 66.1
C07p48580 Brassica napus HOM05D003606 ORTHO05D004650 2.4e-103 380.2 428 54.9
HPP92_026819 Vanilla planifolia HOM05D003606 ORTHO05D004650 4.1e-103 379.4 458 48.3
CBR_g38286 Chara braunii HOM05D003606 ORTHO05D004650 4.5e-102 375.9 392 56.4
AUR62009405 Chenopodium quinoa HOM05D003606 ORTHO05D004650 1.0e-98 364.8 295 81.7
SMO259G0032 Selaginella moellendorffii HOM05D003606 ORTHO05D004650 8.8e-98 361.7 409 53.3
A10p29890 Brassica napus HOM05D003606 ORTHO05D004650 1.2e-94 351.3 412 52.4
MD09G1280600 Malus domestica HOM05D003606 ORTHO05D004650 3.2e-92 343.2 319 71.8
TPR.G7603 Trifolium pratense HOM05D003606 ORTHO05D004650 4.2e-92 342.8 335 64.5
MCO05G213 Micromonas commoda HOM05D003606 ORTHO05D004650 2.4e-87 327.0 386 51.3
Hund00228 Selenicereus undatus HOM05D003606 ORTHO05D004650 2.2e-85 320.5 368 56.2
BcaC06g32566 Brassica carinata HOM05D003606 ORTHO05D004650 9.4e-84 315.1 394 47.5
BcaNung05838 Brassica carinata HOM05D003606 ORTHO05D004650 1.6e-78 297.7 387 45.0
Ca_22822_v3 Cicer arietinum L. HOM05D003606 ORTHO05D000002 9.4e-76 288.5 197 69.5
COL.COLO4_04880 Corchorus olitorius HOM05D003606 ORTHO05D004650 6.8e-74 282.3 320 71.9
PRCOL_00003575 Prasinoderma coloniale HOM05D003606 ORTHO05D004650 1.5e-73 281.2 412 48.1
BraA10t45027Z Brassica rapa HOM05D003606 ORTHO05D004650 4.8e-72 276.2 258 64.7
Haze_26363 Corylus avellana HOM05D003606 ORTHO05D004650 4.7e-67 259.6 397 42.8
BraA10t43107Z Brassica rapa HOM05D003606 ORTHO05D004650 8.3e-64 248.8 252 59.5
Cre01.g000600 Chlamydomonas reinhardtii HOM05D003606 ORTHO05D004650 1.1e-63 248.4 401 48.9
A10p10270 Brassica napus HOM05D003606 ORTHO05D004650 1.2e-62 245.0 252 59.1
HanXRQChr15g0491881 Helianthus annuus HOM05D003606 ORTHO05D004650 1.3e-61 241.5 190 63.7
CSS0037178 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 1.7e-48 198.0 99 91.9
Sc03g0002540 Simmondsia chinensis HOM05D003606 ORTHO05D004650 4.9e-48 196.4 122 77.0
BolC9t57121H Brassica oleracea HOM05D003606 ORTHO05D004650 2.7e-46 190.7 294 39.5
AUR62034729 Chenopodium quinoa HOM05D003606 ORTHO05D004650 3.0e-45 187.2 99 85.9
C09p42410 Brassica napus HOM05D003606 ORTHO05D004650 1.5e-44 184.9 294 39.5
CSS0009389 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 1.2e-43 181.8 130 70.0
Manes.07G009860 Manihot esculenta HOM05D003606 ORTHO05D004650 1.2e-38 165.2 84 88.1
Cfa026891 Carpinus fangiana HOM05D003606 ORTHO05D004650 1.0e-37 162.2 417 34.8
TAR636G3369 Trochodendron aralioides HOM05D003606 ORTHO05D003127 8.1e-35 152.5 152 56.6
Oeu060950.1 Olea europaea HOM05D003606 ORTHO05D016710 9.9e-33 145.6 186 46.8
BcaC06g33525 Brassica carinata HOM05D003606 ORTHO05D004650 8.4e-32 142.5 99 66.7
BraA10t45028Z Brassica rapa HOM05D003606 ORTHO05D004650 3.2e-31 140.6 95 72.6
Medtr0421s0030 Medicago truncatula HOM05D003606 ORTHO05D004650 4.6e-30 136.7 88 76.1
BcaNung04851 Brassica carinata HOM05D003606 ORTHO05D004650 2.3e-29 134.4 102 65.7
CSS0038697 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D016710 6.4e-24 116.3 57 89.5
MD09G1280700 Malus domestica HOM05D003606 ORTHO05D004650 8.4e-24 115.9 77 71.4
BolC9t57120H Brassica oleracea HOM05D003606 ORTHO05D033191 2.4e-23 114.4 79 69.6
TPR.G39665 Trifolium pratense HOM05D003606 ORTHO05D033191 3.9e-21 107.1 67 74.6
SalBow4G2833 Salvia bowleyana HOM05D003606 ORTHO05D004650 6.6e-21 106.3 295 36.3
C09p42400 Brassica napus HOM05D003606 ORTHO05D033191 3.1e-18 97.4 68 66.2
SMO259G0025 Selaginella moellendorffii HOM05D003606 ORTHO05D004650 6.9e-18 96.3 49 79.6
GSVIVG01032170001 Vitis vinifera HOM05D003606 ORTHO05D004650 1.2e-14 85.5 59 67.8
CSS0009074 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D043277 1.6e-14 85.1 41 92.7
CSS0037126 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D043277 1.6e-14 85.1 41 92.7
BcaC01g02187 Brassica carinata HOM05D003606 ORTHO05D016710 3.5e-14 84.0 120 59.2
QL06p005531 Quercus lobata HOM05D011240 ORTHO05D014254 4.6e-14 83.6 40 92.5
TAR636G2756 Trochodendron aralioides HOM05D003606 ORTHO05D004650 8.7e-13 79.3 39 89.7
Eucgr.G03346 Eucalyptus grandis HOM05D003606 ORTHO05D004650 9.6e-12 75.9 41 80.5
COL.COLO4_24393 Corchorus olitorius HOM05D003606 ORTHO05D004650 1.3e-11 75.5 41 78.0
C02p14020 Brassica napus HOM05D003606 ORTHO05D016710 2.1e-11 74.7 155 30.3
CANSAT51G0014 Cannabis sativa HOM05D003606 ORTHO05D004650 2.1e-11 74.7 83 47.0
Hund00229 Selenicereus undatus HOM05D003606 ORTHO05D004650 4.8e-11 73.6 39 82.1
BolC2t07520H Brassica oleracea HOM05D003606 ORTHO05D016710 4.0e-10 70.5 46 60.9
Eucgr.G03354 Eucalyptus grandis HOM05D003606 ORTHO05D004650 9.9e-09 65.9 99 41.4
TPR.G8471 Trifolium pratense HOM05D003606 ORTHO05D004650 1.3e-08 65.5 40 70.0
CSS0046585 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 2.2e-08 64.7 52 61.5
Oeu060951.1 Olea europaea HOM05D003606 ORTHO05D004650 2.9e-08 64.3 35 77.1
Glyma.07G100800 Glycine max HOM05D002288 ORTHO05D002894 4.6e-06 57.0 190 29.5
THA.LOC104821238 Tarenaya hassleriana HOM05D002634 ORTHO05D003100 4.6e-06 57.0 188 23.4


User provided reference genes

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