Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa010801 Carpinus fangiana HOM05D003654 ORTHO05D004176 5.0e-33 144.1 83 100.0
Haze_03159 Corylus avellana HOM05D003654 ORTHO05D004176 7.0e-27 123.6 83 89.2
QL04p008848 Quercus lobata HOM05D003654 ORTHO05D004176 1.1e-16 89.7 87 70.1
CiPaw.13G007300 Carya illinoinensis HOM05D003654 ORTHO05D004176 2.3e-14 82.0 88 67.0
Thecc.05G154000 Theobroma cacao HOM05D003654 ORTHO05D004176 2.6e-13 78.6 87 52.9
Cpa.g.c30295 Carica papaya HOM05D003654 ORTHO05D004176 1.4e-11 72.8 86 62.8
Sabra16G0058500 Salix brachista HOM05D003654 ORTHO05D004176 1.8e-11 72.4 85 62.4
Eucgr.G03361 Eucalyptus grandis HOM05D003654 ORTHO05D004176 3.1e-11 71.6 86 65.1
TAR633G1637 Trochodendron aralioides HOM05D003654 ORTHO05D004176 4.1e-11 71.2 86 46.5
THA.LOC109117091 Tarenaya hassleriana HOM05D003654 ORTHO05D004176 3.5e-10 68.2 94 40.4
Rhsim07G0057900 Rhododendron simsii HOM05D003654 ORTHO05D004176 4.5e-10 67.8 89 52.8
Atru.chr1.1088 Acer truncatum HOM05D003654 ORTHO05D004176 5.9e-10 67.4 78 47.4
Hma1.2p1_2266F.1_g318440 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 5.9e-10 67.4 91 45.1
Prupe.7G061500 Prunus persica HOM05D003654 ORTHO05D004176 1.0e-09 66.6 86 59.3
Eucgr.A02351 Eucalyptus grandis HOM05D003654 ORTHO05D004176 1.7e-09 65.9 82 62.2
Hma1.2p1_2266F.1_g318450 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 2.2e-09 65.5 91 44.0
Atru.chr1.1086 Acer truncatum HOM05D003654 ORTHO05D004176 2.9e-09 65.1 84 40.5
ClCG09G003960 Citrullus lanatus HOM05D003654 ORTHO05D004176 2.9e-09 65.1 54 57.4
Potri.016G055901 Populus trichocarpa HOM05D003654 ORTHO05D004176 3.8e-09 64.7 85 56.5
Aqoxy7G00792 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 5.0e-09 64.3 85 42.4
CsaV3_7G030860 Cucumis sativus L. HOM05D003654 ORTHO05D004176 5.0e-09 64.3 98 42.9
Manes.08G050800 Manihot esculenta HOM05D003654 ORTHO05D004176 5.0e-09 64.3 85 60.0
Sed0011402 Sechium edule HOM05D003654 ORTHO05D004176 5.0e-09 64.3 30 90.0
Gohir.D09G118500 Gossypium hirsutum HOM05D003654 ORTHO05D004176 6.5e-09 63.9 82 43.9
MELO3C023573.2 Cucumis melo HOM05D003654 ORTHO05D004176 8.5e-09 63.5 30 86.7
Ca_08602_v3 Cicer arietinum L. HOM05D003654 ORTHO05D004176 1.1e-08 63.2 83 42.2
Glyma.05G150100 Glycine max HOM05D003654 ORTHO05D004176 1.1e-08 63.2 83 47.0
Gohir.A09G122400 Gossypium hirsutum HOM05D003654 ORTHO05D004176 1.1e-08 63.2 82 43.9
Hma1.2p1_2266F.1_g318430 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 1.1e-08 63.2 83 43.4
BcaC02g09939 Brassica carinata HOM05D003654 ORTHO05D004176 1.5e-08 62.8 88 45.5
C04p34970 Brassica napus HOM05D003654 ORTHO05D004176 1.5e-08 62.8 88 45.5
BolC4t25052H Brassica oleracea HOM05D003654 ORTHO05D004176 1.5e-08 62.8 88 45.5
Ciclev10006321m.g Citrus clementina HOM05D003654 ORTHO05D004176 1.5e-08 62.8 30 90.0
Gorai.004G171000 Gossypium raimondii HOM05D003654 ORTHO05D004176 1.5e-08 62.8 87 42.5
Nitab4.5_0006340g0010 Nicotiana tabacum HOM05D003654 ORTHO05D004176 1.5e-08 62.8 90 41.1
ClCG10G017020 Citrullus lanatus HOM05D003654 ORTHO05D004176 1.9e-08 62.4 70 47.1
Gohir.D08G164000 Gossypium hirsutum HOM05D003654 ORTHO05D004176 1.9e-08 62.4 87 42.5
Manes.07G007900 Manihot esculenta HOM05D003654 ORTHO05D004176 1.9e-08 62.4 86 58.1
Nn2g15259 Nelumbo nucifera HOM05D003654 ORTHO05D004176 1.9e-08 62.4 88 48.9
Sopen01g034550 Solanum pennellii HOM05D003654 ORTHO05D004176 1.9e-08 62.4 61 52.5
ATR0626G210 Amborella trichopoda HOM05D003654 ORTHO05D004176 2.5e-08 62.0 30 86.7
Thhalv10006420m.g Eutrema salsugineum HOM05D003654 ORTHO05D004176 2.5e-08 62.0 67 50.7
Prupe.8G033700 Prunus persica HOM05D003654 ORTHO05D004176 2.5e-08 62.0 84 40.5
BcaB02g07603 Brassica carinata HOM05D003654 ORTHO05D004176 3.2e-08 61.6 95 52.6
COL.COLO4_28276 Corchorus olitorius HOM05D003654 ORTHO05D004176 3.2e-08 61.6 30 86.7
FAN02G2075 Fragaria x ananassa HOM05D003654 ORTHO05D004176 3.2e-08 61.6 91 50.5
Gorai.006G136800 Gossypium raimondii HOM05D003654 ORTHO05D004176 3.2e-08 61.6 82 42.7
Nn7g36270 Nelumbo nucifera HOM05D003654 ORTHO05D004176 3.2e-08 61.6 88 44.3
BcaC08g44845 Brassica carinata HOM05D003654 ORTHO05D004176 4.2e-08 61.2 30 86.7
BolC6t37599H Brassica oleracea HOM05D003654 ORTHO05D004176 4.2e-08 61.2 30 86.7
BraA07t30006Z Brassica rapa HOM05D003654 ORTHO05D004176 4.2e-08 61.2 30 86.7
Migut.J01761 Erythranthe guttata HOM05D003654 ORTHO05D004176 4.2e-08 61.2 30 90.0
Manes.10G139300 Manihot esculenta HOM05D003654 ORTHO05D004176 4.2e-08 61.2 30 86.7
Sp5g05150 Schrenkiella parvula HOM05D003654 ORTHO05D004176 4.2e-08 61.2 95 48.4
Thecc.01G407700 Theobroma cacao HOM05D003654 ORTHO05D004176 4.2e-08 61.2 91 51.6
Atru.chr11.2594 Acer truncatum HOM05D003654 ORTHO05D004176 5.5e-08 60.8 62 53.2
ATR0626G251 Amborella trichopoda HOM05D003654 ORTHO05D004176 5.5e-08 60.8 30 80.0
EL10Ac2g04348 Beta vulgaris HOM05D003654 ORTHO05D004176 5.5e-08 60.8 30 86.7
Solyc01g087580.3 Solanum lycopersicum HOM05D003654 ORTHO05D004176 5.5e-08 60.8 30 86.7
Zm00001eb301890 Zea mays HOM05D003654 ORTHO05D004176 5.5e-08 60.8 30 86.7
Atru.chr1.1087 Acer truncatum HOM05D003654 ORTHO05D004176 7.2e-08 60.5 82 39.0
AL5G39020 Arabidopsis lyrata HOM05D003654 ORTHO05D004176 7.2e-08 60.5 30 83.3
A04p03110 Brassica napus HOM05D003654 ORTHO05D004176 7.2e-08 60.5 83 56.6
BraA04t16034Z Brassica rapa HOM05D003654 ORTHO05D004176 7.2e-08 60.5 83 56.6
CANSAT80G0428 Cannabis sativa HOM05D003654 ORTHO05D004176 7.2e-08 60.5 30 86.7
MELO3C009681.2 Cucumis melo HOM05D003654 ORTHO05D004176 7.2e-08 60.5 30 83.3
CsaV3_3G039380 Cucumis sativus L. HOM05D003654 ORTHO05D004176 7.2e-08 60.5 30 83.3
DCAR_003222 Daucus carota HOM05D003654 ORTHO05D004176 7.2e-08 60.5 82 59.8
RcHm_v2.0_Chr3g0482181 Rosa chinensis HOM05D003654 ORTHO05D004176 7.2e-08 60.5 30 86.7
Sabra06G0035500 Salix brachista HOM05D000131 ORTHO05D004176 7.2e-08 60.5 84 46.4
Sc10g0000210 Simmondsia chinensis HOM05D003654 ORTHO05D004176 7.2e-08 60.5 73 47.9
CDE11G0735 Ceratophyllum demersum HOM05D003654 ORTHO05D004176 9.4e-08 60.1 30 83.3
Haze_19862 Corylus avellana HOM05D003654 ORTHO05D004176 9.4e-08 60.1 30 83.3
Gohir.A08G143100 Gossypium hirsutum HOM05D003654 ORTHO05D004176 9.4e-08 60.1 87 52.9
Nn5g30179 Nelumbo nucifera HOM05D003654 ORTHO05D004176 9.4e-08 60.1 30 83.3
Potri.001G263404 Populus trichocarpa HOM05D003654 ORTHO05D004176 9.4e-08 60.1 30 80.0
Sabra16G0161800 Salix brachista HOM05D003654 ORTHO05D004176 9.4e-08 60.1 30 80.0
BcaC07g40378 Brassica carinata HOM05D003654 ORTHO05D004176 1.2e-07 59.7 107 37.4
Eucgr.A02353 Eucalyptus grandis HOM05D003654 ORTHO05D004176 1.2e-07 59.7 30 83.3
Glyma.08G106900 Glycine max HOM05D003654 ORTHO05D004176 1.2e-07 59.7 30 83.3
Nn1g04367 Nelumbo nucifera HOM05D003654 ORTHO05D004176 1.2e-07 59.7 87 42.5
Actinidia19408 Actinidia chinensis HOM05D003654 ORTHO05D004176 1.6e-07 59.3 74 47.3
BcaB02g08316 Brassica carinata HOM05D003654 ORTHO05D004176 1.6e-07 59.3 62 71.0
CiPaw.09G037900 Carya illinoinensis HOM05D003654 ORTHO05D004176 1.6e-07 59.3 55 56.4
MBI17_g05505_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 1.6e-07 59.3 64 48.4
MBI17_g39959_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 1.6e-07 59.3 64 48.4
Os07g0185900 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 1.6e-07 59.3 29 89.7
RcHm_v2.0_Chr3g0482161 Rosa chinensis HOM05D003654 ORTHO05D004176 1.6e-07 59.3 30 83.3
AT3G57450 Arabidopsis thaliana HOM05D003654 ORTHO05D004176 2.1e-07 58.9 30 80.0
CARHR167650 Cardamine hirsuta HOM05D003654 ORTHO05D004176 2.1e-07 58.9 30 80.0
Ciclev10006585m.g Citrus clementina HOM05D003654 ORTHO05D004176 2.1e-07 58.9 30 80.0
Ciclev10033218m.g Citrus clementina HOM05D003654 ORTHO05D004176 2.1e-07 58.9 89 39.3
Migut.N01784 Erythranthe guttata HOM05D003654 ORTHO05D004176 2.1e-07 58.9 30 83.3
Lsat_1_v5_gn_9_28921 Lactuca sativa HOM05D003654 ORTHO05D004176 2.1e-07 58.9 30 80.0
Lsat_1_v5_gn_9_28941 Lactuca sativa HOM05D003654 ORTHO05D004176 2.1e-07 58.9 30 80.0
Oeu014591.1 Olea europaea HOM05D003654 ORTHO05D004176 2.1e-07 58.9 89 40.4
Phvul.003G066700 Phaseolus vulgaris HOM05D003654 ORTHO05D004176 2.1e-07 58.9 30 80.0
PGSC0003DMG400006788 Solanum tuberosum HOM05D003654 ORTHO05D004176 2.1e-07 58.9 30 80.0
Carub.0005s2429 Capsella rubella HOM05D003654 ORTHO05D004176 2.7e-07 58.5 100 38.0
Cc06_g17070 Coffea canephora HOM05D003654 ORTHO05D004176 2.7e-07 58.5 30 80.0
HanXRQChr03g0062211 Helianthus annuus HOM05D003654 ORTHO05D004176 2.7e-07 58.5 30 80.0
HanXRQChr03g0062221 Helianthus annuus HOM05D003654 ORTHO05D004176 2.7e-07 58.5 30 80.0
Lsat_1_v5_gn_9_28881 Lactuca sativa HOM05D003654 ORTHO05D004176 2.7e-07 58.5 30 76.7
MBI17_g18370_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 2.7e-07 58.5 30 80.0
MBI17_g45827_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 2.7e-07 58.5 30 80.0
SalBow6G0563 Salvia bowleyana HOM05D003654 ORTHO05D004176 2.7e-07 58.5 29 86.2
Ah.10g038700 Amaranthus hybridus HOM05D003654 ORTHO05D004176 3.6e-07 58.2 30 80.0
CDE03G0266 Ceratophyllum demersum HOM05D005370 ORTHO05D006659 3.6e-07 58.2 30 80.0
DCAR_020491 Daucus carota HOM05D003654 ORTHO05D004176 3.6e-07 58.2 30 76.7
Hma1.2p1_0226F.1_g095570 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 3.6e-07 58.2 64 51.6
Lj9P638T60 Lonicera japonica HOM05D003654 ORTHO05D004176 3.6e-07 58.2 30 80.0
Os03g0734500 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 3.6e-07 58.2 30 80.0
Peaxi162Scf00493g00002 Petunia axillaris HOM05D003654 ORTHO05D004176 3.6e-07 58.2 30 80.0
QL07p000287 Quercus lobata HOM05D003654 ORTHO05D004176 3.6e-07 58.2 30 83.3
BcaC07g40377 Brassica carinata HOM05D003654 ORTHO05D004176 4.7e-07 57.8 102 37.3
Gohir.A11G312450 Gossypium hirsutum HOM05D003654 ORTHO05D004176 4.7e-07 57.8 59 49.2
Gohir.D09G118550 Gossypium hirsutum HOM05D003654 ORTHO05D004176 4.7e-07 57.8 30 83.3
Gorai.006G136900 Gossypium raimondii HOM05D003654 ORTHO05D004176 4.7e-07 57.8 30 83.3
Lsat_1_v5_gn_9_28901 Lactuca sativa HOM05D003654 ORTHO05D004176 4.7e-07 57.8 68 42.6
Nn1g05869 Nelumbo nucifera HOM05D003654 ORTHO05D004176 4.7e-07 57.8 92 41.3
SEGI_17870 Sequoiadendron giganteum HOM05D003654 ORTHO05D004176 4.7e-07 57.8 30 80.0
PGSC0003DMG400027273 Solanum tuberosum HOM05D003654 ORTHO05D004176 4.7e-07 57.8 30 76.7
Zm00001eb215460 Zea mays HOM05D003654 ORTHO05D004176 4.7e-07 57.8 30 80.0
AUR62009401 Chenopodium quinoa HOM05D003654 ORTHO05D004176 6.1e-07 57.4 30 83.3
AUR62023084 Chenopodium quinoa HOM05D003654 ORTHO05D004176 6.1e-07 57.4 30 83.3
Potri.006G050800 Populus trichocarpa HOM05D003654 ORTHO05D004176 6.1e-07 57.4 83 55.4
Sed0005344 Sechium edule HOM05D003654 ORTHO05D004176 6.1e-07 57.4 95 42.1
Solyc04g015700.1 Solanum lycopersicum HOM05D003654 ORTHO05D004176 6.1e-07 57.4 30 76.7
Sopen04g007780 Solanum pennellii HOM05D003654 ORTHO05D004176 6.1e-07 57.4 30 76.7
PGSC0003DMG400006789 Solanum tuberosum HOM05D003654 ORTHO05D004176 6.1e-07 57.4 30 80.0
Lj3g0024349 Lotus japonicus HOM05D003654 ORTHO05D004176 8.0e-07 57.0 83 43.4
Peaxi162Scf00071g01140 Petunia axillaris HOM05D003654 ORTHO05D004176 8.0e-07 57.0 30 76.7
Sed0004161 Sechium edule HOM05D003654 ORTHO05D004176 8.0e-07 57.0 30 76.7
DCAR_022378 Daucus carota HOM05D003654 ORTHO05D004176 1.0e-06 56.6 86 40.7
Gohir.D11G328950 Gossypium hirsutum HOM05D003654 ORTHO05D004176 1.0e-06 56.6 30 73.3
Gorai.007G360300 Gossypium raimondii HOM05D003654 ORTHO05D004176 1.0e-06 56.6 30 73.3
Phvul.003G048800 Phaseolus vulgaris HOM05D003654 ORTHO05D004176 1.0e-06 56.6 64 46.9
BraA09t40486Z Brassica rapa HOM05D003654 ORTHO05D004176 1.8e-06 55.8 30 76.7
Nitab4.5_0006340g0020 Nicotiana tabacum HOM05D003654 ORTHO05D004176 1.8e-06 55.8 30 80.0
Solyc02g071460.2 Solanum lycopersicum HOM05D003654 ORTHO05D004176 1.8e-06 55.8 87 49.4
Nitab4.5_0000707g0220 Nicotiana tabacum HOM05D003654 ORTHO05D004176 2.3e-06 55.5 30 76.7
BcaC07g40382 Brassica carinata HOM05D003654 ORTHO05D004176 4.0e-06 54.7 71 43.7
C08p32930 Brassica napus HOM05D003654 ORTHO05D004176 4.0e-06 54.7 71 43.7
BolC8t50897H Brassica oleracea HOM05D003654 ORTHO05D004176 4.0e-06 54.7 71 43.7
Sed0002974 Sechium edule HOM05D003654 ORTHO05D004176 4.0e-06 54.7 30 73.3
Solyc01g087570.2 Solanum lycopersicum HOM05D003654 ORTHO05D004176 4.0e-06 54.7 30 76.7
Sopen01g034540 Solanum pennellii HOM05D003654 ORTHO05D004176 4.0e-06 54.7 30 76.7
PGSC0003DMG400006790 Solanum tuberosum HOM05D003654 ORTHO05D004176 4.0e-06 54.7 30 76.7
SGA_v2.0_scaffold119G32750 Striga asiatica HOM05D003654 ORTHO05D004176 4.0e-06 54.7 30 70.0
Hma1.2p1_0493F.1_g164900 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 5.2e-06 54.3 64 46.9
Hma1.2p1_0493F.1_g164905 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 5.2e-06 54.3 64 46.9
HPP92_012497 Vanilla planifolia HOM05D003654 ORTHO05D004176 5.2e-06 54.3 61 44.3
VMungo0251G2538 Vigna mungo HOM05D003654 ORTHO05D004176 5.2e-06 54.3 68 44.1
Nitab4.5_0000733g0010 Nicotiana tabacum HOM05D003654 ORTHO05D004176 6.8e-06 53.9 26 80.8
Eucgr.H02820 Eucalyptus grandis HOM05D003654 ORTHO05D004176 8.8e-06 53.5 30 76.7
Os10g0417300 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 8.8e-06 53.5 28 78.6
Psat5g210480 Pisum sativum HOM05D003654 ORTHO05D004176 8.8e-06 53.5 83 39.8
RcHm_v2.0_Chr1g0317121 Rosa chinensis HOM05D021847 ORTHO05D025587 8.8e-06 53.5 84 53.6


User provided reference genes

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