Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa010795 Carpinus fangiana HOM05D007963 ORTHO05D009967 7.4e-62 240.4 120 100.0
Haze_03176 Corylus avellana HOM05D007963 ORTHO05D009967 1.9e-57 225.7 120 92.5
CiPaw.13G006800 Carya illinoinensis HOM05D007963 ORTHO05D009967 2.6e-38 162.2 120 69.2
QL04p008099 Quercus lobata HOM05D007963 ORTHO05D009967 3.3e-38 161.8 120 72.5
QL04p008549 Quercus lobata HOM05D007963 ORTHO05D009967 3.3e-38 161.8 120 72.5
CiPaw.14G001400 Carya illinoinensis HOM05D007963 ORTHO05D009967 4.5e-35 151.4 116 65.5
Duzib133G0999 Durio zibethinus HOM05D007963 ORTHO05D009967 5.7e-30 134.4 122 54.1
ClCG10G012280 Citrullus lanatus HOM05D007963 ORTHO05D009967 1.8e-28 129.4 124 57.3
Ciclev10033085m.g Citrus clementina HOM05D007963 ORTHO05D009967 1.8e-28 129.4 125 57.6
Potri.009G059100 Populus trichocarpa HOM05D007963 ORTHO05D009967 4.1e-28 128.3 117 57.3
Atru.chr11.2601 Acer truncatum HOM05D007963 ORTHO05D009967 5.3e-28 127.9 127 58.3
Thecc.01G408600 Theobroma cacao HOM05D007963 ORTHO05D009967 1.2e-27 126.7 123 52.0
CSS0005909 Camellia sinensis var. sinensis HOM05D007963 ORTHO05D009967 4.5e-27 124.8 121 60.3
vmacro13678 Vaccinium macrocarpon HOM05D007963 ORTHO05D009967 5.9e-27 124.4 123 59.3
Manes.07G007300 Manihot esculenta HOM05D007963 ORTHO05D009967 1.9e-25 119.4 122 52.5
TAR369G0233 Trochodendron aralioides HOM05D007963 ORTHO05D009967 1.9e-25 119.4 121 57.9
FvH4_5g32100 Fragaria vesca HOM05D007963 ORTHO05D009967 4.2e-25 118.2 128 55.5
Sed0005364 Sechium edule HOM05D007963 ORTHO05D009967 1.6e-24 116.3 125 54.4
MELO3C023985.2 Cucumis melo HOM05D007963 ORTHO05D009967 2.1e-24 115.9 127 52.0
Nn2g15279 Nelumbo nucifera HOM05D007963 ORTHO05D009967 2.1e-24 115.9 122 54.9
RcHm_v2.0_Chr7g0228141 Rosa chinensis HOM05D007963 ORTHO05D009967 2.1e-24 115.9 124 54.0
Lj3g0025556 Lotus japonicus HOM05D007963 ORTHO05D009967 2.7e-24 115.5 124 53.2
CsaV3_3G032070 Cucumis sativus L. HOM05D007963 ORTHO05D009967 1.0e-23 113.6 127 52.0
DCAR_003219 Daucus carota HOM05D007963 ORTHO05D009967 8.8e-23 110.5 119 54.6
Rhsim07G0056600 Rhododendron simsii HOM05D007963 ORTHO05D009967 8.8e-23 110.5 126 53.2
Prupe.2G017200 Prunus persica HOM05D007963 ORTHO05D009967 2.0e-22 109.4 99 61.6
SalBow5G1437 Salvia bowleyana HOM05D007963 ORTHO05D009967 2.0e-22 109.4 123 51.2
SalBow5G4167 Salvia bowleyana HOM05D007963 ORTHO05D009967 2.0e-22 109.4 123 51.2
Lalb_Chr20g0107921 Lupinus albus HOM05D007963 ORTHO05D009967 5.7e-22 107.8 121 53.7
Sed0018324 Sechium edule HOM05D007963 ORTHO05D009967 7.5e-22 107.5 120 50.0
Eucgr.J01210 Eucalyptus grandis HOM05D007963 ORTHO05D009967 1.3e-21 106.7 123 49.6
PGSC0003DMG400023738 Solanum tuberosum HOM05D007963 ORTHO05D009967 1.7e-21 106.3 125 51.2
Sabra09G0043500 Salix brachista HOM05D007963 ORTHO05D009967 3.7e-21 105.1 104 52.9
MSTRG.20574 Avicennia marina HOM05D007963 ORTHO05D009967 4.8e-21 104.8 114 52.6
Glyma.12G008400 Glycine max HOM05D007963 ORTHO05D009967 8.3e-21 104.0 130 49.2
VMungo1127G0040 Vigna mungo HOM05D007963 ORTHO05D009967 1.4e-20 103.2 121 47.1
MD02G1308200 Malus domestica HOM05D007963 ORTHO05D009967 7.0e-20 100.9 113 50.4
Sopen10g031160 Solanum pennellii HOM05D007963 ORTHO05D009967 7.0e-20 100.9 92 57.6
EL10Ac2g04344 Beta vulgaris HOM05D002263 ORTHO05D003537 9.1e-20 100.5 121 45.5
HanXRQChr01g0016481 Helianthus annuus HOM05D007963 ORTHO05D009967 4.5e-19 98.2 123 47.2
MBI04_g34432_MAGBIO Magnolia biondii HOM05D007963 ORTHO05D009967 5.9e-19 97.8 119 52.9
Lsat_1_v5_gn_1_105740 Lactuca sativa HOM05D007963 ORTHO05D009967 1.7e-18 96.3 123 48.8
AUR62009397 Chenopodium quinoa HOM05D007963 ORTHO05D009967 5.0e-18 94.7 97 55.7
Migut.B01286 Erythranthe guttata HOM05D007963 ORTHO05D009967 6.5e-18 94.4 121 50.4
Hma1.2p1_2160F.1_g315600 Hydrangea macrophylla HOM05D007963 ORTHO05D009967 1.5e-17 93.2 74 60.8
COL.COLO4_04871 Corchorus olitorius HOM05D007963 ORTHO05D009967 1.9e-17 92.8 97 54.6
Gorai.004G171400 Gossypium raimondii HOM05D007963 ORTHO05D009967 5.5e-17 91.3 71 64.8
Gohir.A08G143400 Gossypium hirsutum HOM05D007963 ORTHO05D009967 9.4e-17 90.5 70 65.7
Phvul.011G012801 Phaseolus vulgaris HOM05D007963 ORTHO05D009967 9.4e-17 90.5 55 74.5
TWI09G0461 Tripterygium wilfordii HOM05D007963 ORTHO05D009967 2.1e-16 89.4 116 45.7
SGA_v2.0_scaffold4G02518 Striga asiatica HOM05D007963 ORTHO05D009967 3.6e-16 88.6 117 47.9
Gohir.D08G164400 Gossypium hirsutum HOM05D007963 ORTHO05D009967 2.3e-15 85.9 66 65.2
Medtr4g039540 Medicago truncatula HOM05D007963 ORTHO05D009967 4.0e-15 85.1 129 48.8
Sc23g0005920 Simmondsia chinensis HOM05D007963 ORTHO05D009967 4.0e-15 85.1 95 49.5
unitig_61.g26362 Utricularia gibba HOM05D007963 ORTHO05D009967 6.8e-15 84.3 103 52.4
Cpa.g.sc125.16 Carica papaya HOM05D007963 ORTHO05D009967 2.0e-14 82.8 105 50.5
Os03g0217000 Oryza sativa ssp. japonica HOM05D007963 ORTHO05D009967 4.4e-14 81.6 48 77.1
Zm00001eb400040 Zea mays HOM05D007963 ORTHO05D009967 7.5e-14 80.9 48 79.2
CARHR161770 Cardamine hirsuta HOM05D007963 ORTHO05D009967 2.8e-13 79.0 127 43.3
Thhalv10010836m.g Eutrema salsugineum HOM05D007963 ORTHO05D009967 3.1e-12 75.5 126 42.1
BcaB01g00449 Brassica carinata HOM05D007963 ORTHO05D009967 1.6e-11 73.2 126 38.1
C08p27320 Brassica napus HOM05D007963 ORTHO05D009967 1.6e-11 73.2 126 38.1
BolC8t50349H Brassica oleracea HOM05D007963 ORTHO05D009967 7.7e-11 70.9 126 37.3
A04p07310 Brassica napus HOM05D007963 ORTHO05D009967 1.3e-10 70.1 124 37.9
BraA04t16426Z Brassica rapa HOM05D007963 ORTHO05D009967 1.3e-10 70.1 124 37.9
A09p45130 Brassica napus HOM05D007963 ORTHO05D009967 1.7e-10 69.7 107 43.0
BraA09t39974Z Brassica rapa HOM05D007963 ORTHO05D009967 1.7e-10 69.7 107 43.0
BcaB02g08592 Brassica carinata HOM05D007963 ORTHO05D009967 2.9e-10 68.9 112 39.3
BcaNung06087 Brassica carinata HOM05D007963 ORTHO05D009967 2.9e-10 68.9 99 43.4
BcaNung06964 Brassica carinata HOM05D007963 ORTHO05D009967 2.9e-10 68.9 112 37.5
AT3G52070 Arabidopsis thaliana HOM05D007963 ORTHO05D009967 6.6e-10 67.8 123 39.0
AL5G32620 Arabidopsis lyrata HOM05D007963 ORTHO05D009967 1.1e-09 67.0 127 39.4
BcaC02g09285 Brassica carinata HOM05D007963 ORTHO05D009967 1.5e-09 66.6 92 43.5
Carub.0005s1839 Capsella rubella HOM05D007963 ORTHO05D009967 1.9e-09 66.2 107 41.1
SEGI_13442 Sequoiadendron giganteum HOM05D007963 ORTHO05D009967 2.8e-08 62.4 45 64.4
SEGI_37070 Sequoiadendron giganteum HOM05D007963 ORTHO05D009967 2.8e-08 62.4 45 64.4
Aa31LG10G7140 Aethionema arabicum HOM05D007963 ORTHO05D009967 3.6e-08 62.0 133 35.3
ATR0332G088 Amborella trichopoda HOM05D007963 ORTHO05D009967 4.4e-06 55.1 55 49.1


User provided reference genes

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