Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa010790 Carpinus fangiana HOM05D006111 ORTHO05D007683 2.6e-200 701.8 350 100.0
CiPaw.13G006200 Carya illinoinensis HOM05D006111 ORTHO05D007683 1.9e-171 605.9 375 82.1
QL04p008312 Quercus lobata HOM05D006111 ORTHO05D007683 2.6e-163 578.9 383 78.6
Dinv43431 Davidia involucrata HOM05D006111 ORTHO05D007683 2.2e-159 565.8 382 75.7
Duzib268G0420 Durio zibethinus HOM05D006111 ORTHO05D007683 5.5e-158 561.2 376 75.3
Gorai.004G171600 Gossypium raimondii HOM05D006111 ORTHO05D007683 2.1e-157 559.3 379 74.4
CSS0012829 Camellia sinensis var. sinensis HOM05D006111 ORTHO05D007683 6.1e-157 557.8 379 74.9
CSS0034733 Camellia sinensis var. sinensis HOM05D006111 ORTHO05D007683 6.1e-157 557.8 379 74.9
Gohir.D08G164600 Gossypium hirsutum HOM05D006111 ORTHO05D007683 1.0e-156 557.0 379 74.1
MD07G1013000 Malus domestica HOM05D006111 ORTHO05D007683 6.7e-156 554.3 382 75.1
Prupe.2G015400 Prunus persica HOM05D006111 ORTHO05D007683 6.7e-156 554.3 383 74.7
Thecc.01G409400 Theobroma cacao HOM05D006111 ORTHO05D007683 8.8e-156 553.9 379 74.4
MD02G1308600 Malus domestica HOM05D006111 ORTHO05D007683 1.5e-155 553.1 382 74.9
RcHm_v2.0_Chr1g0316521 Rosa chinensis HOM05D006111 ORTHO05D007683 5.7e-155 551.2 379 74.7
Atru.chr11.2607 Acer truncatum HOM05D006111 ORTHO05D007683 2.2e-154 549.3 380 75.5
TWI09G1338 Tripterygium wilfordii HOM05D006111 ORTHO05D007683 4.8e-154 548.1 379 74.1
Nn7g36241 Nelumbo nucifera HOM05D006111 ORTHO05D007683 2.4e-153 545.8 389 72.8
TAR623G0061 Trochodendron aralioides HOM05D006111 ORTHO05D007683 2.6e-152 542.3 381 73.8
Eucgr.J01211 Eucalyptus grandis HOM05D006111 ORTHO05D007683 1.3e-151 540.0 384 72.7
FvH4_7g01190 Fragaria vesca HOM05D006111 ORTHO05D007683 1.7e-151 539.7 379 73.4
FAN06G2641 Fragaria x ananassa HOM05D006111 ORTHO05D007683 1.7e-151 539.7 379 73.4
Manes.10G140800 Manihot esculenta HOM05D006111 ORTHO05D007683 6.5e-151 537.7 380 72.6
Ciclev10031806m.g Citrus clementina HOM05D006111 ORTHO05D007683 3.2e-150 535.4 384 71.6
FAN03G2464 Fragaria x ananassa HOM05D006111 ORTHO05D007683 3.2e-150 535.4 379 73.1
FAN10G2658 Fragaria x ananassa HOM05D006111 ORTHO05D007683 3.2e-150 535.4 379 73.1
FAN01G0043 Fragaria x ananassa HOM05D006111 ORTHO05D007683 1.2e-149 533.5 379 72.8
Sc10g0000130 Simmondsia chinensis HOM05D006111 ORTHO05D007683 4.0e-148 528.5 383 68.9
PGR044G0412 Punica granatum HOM05D006111 ORTHO05D007683 5.2e-148 528.1 391 69.3
Potri.009G059600 Populus trichocarpa HOM05D006111 ORTHO05D007683 2.6e-147 525.8 386 70.2
COL.COLO4_04864 Corchorus olitorius HOM05D006111 ORTHO05D007683 4.4e-147 525.0 382 71.2
CAN.G666.14 Capsicum annuum HOM05D006111 ORTHO05D007683 1.3e-146 523.5 378 69.6
EL10Ac2g04342 Beta vulgaris HOM05D006111 ORTHO05D007683 1.7e-146 523.1 387 69.8
Potri.009G059800 Populus trichocarpa HOM05D006111 ORTHO05D007683 3.7e-146 521.9 386 70.2
Aqoxy1G00288 Aquilegia oxysepala HOM05D006111 ORTHO05D007683 1.4e-145 520.0 391 69.6
ClCG09G004060 Citrullus lanatus HOM05D006111 ORTHO05D007683 1.2e-144 516.9 380 70.0
PSO339G0604 Papaver somniferum HOM05D006111 ORTHO05D007683 2.0e-144 516.2 389 69.4
MBI02_g05669_MAGBIO Magnolia biondii HOM05D006111 ORTHO05D007683 2.7e-144 515.8 390 69.0
Lalb_Chr01g0015831 Lupinus albus HOM05D006111 ORTHO05D007683 5.9e-144 514.6 379 71.2
CARHR082760 Cardamine hirsuta HOM05D006111 ORTHO05D007683 1.0e-143 513.8 381 70.6
Peaxi162Scf00818g00127 Petunia axillaris HOM05D006111 ORTHO05D007683 1.0e-143 513.8 394 67.5
PSO384G4428 Papaver somniferum HOM05D006111 ORTHO05D007683 1.3e-143 513.5 389 69.7
Ah.10g038770 Amaranthus hybridus HOM05D006111 ORTHO05D007683 2.2e-143 512.7 388 67.8
Sp3g06920 Schrenkiella parvula HOM05D006111 ORTHO05D007683 2.2e-143 512.7 382 69.4
Thhalv10020943m.g Eutrema salsugineum HOM05D006111 ORTHO05D007683 2.9e-143 512.3 386 69.7
SalBow6G4116 Salvia bowleyana HOM05D006111 ORTHO05D007683 2.9e-143 512.3 385 68.8
AL3G19390 Arabidopsis lyrata HOM05D006111 ORTHO05D007683 3.8e-143 511.9 379 69.9
Sed0027336 Sechium edule HOM05D006111 ORTHO05D007683 6.5e-143 511.1 380 70.0
CANSAT80G0546 Cannabis sativa HOM05D006111 ORTHO05D007683 8.5e-143 510.8 385 69.1
Carub.0003s0759 Capsella rubella HOM05D006111 ORTHO05D007683 8.5e-143 510.8 379 69.7
SalBow6G6970 Salvia bowleyana HOM05D006111 ORTHO05D007683 8.5e-143 510.8 385 68.6
C03p43240 Brassica napus HOM05D006111 ORTHO05D007683 1.9e-142 509.6 380 69.5
Cc01_g06700 Coffea canephora HOM05D006111 ORTHO05D007683 1.9e-142 509.6 379 68.6
Oeu014586.1 Olea europaea HOM05D006111 ORTHO05D007683 1.9e-142 509.6 389 68.9
CsaV3_7G030960 Cucumis sativus L. HOM05D006111 ORTHO05D007683 2.5e-142 509.2 382 68.8
DCAR_015173 Daucus carota HOM05D006111 ORTHO05D007683 5.5e-142 508.1 377 69.2
AT3G08010 Arabidopsis thaliana HOM05D006111 ORTHO05D007683 7.2e-142 507.7 379 69.1
MELO3C023560.2 Cucumis melo HOM05D006111 ORTHO05D007683 9.4e-142 507.3 398 67.1
THA.LOC104819080 Tarenaya hassleriana HOM05D006111 ORTHO05D007683 3.6e-141 505.4 385 68.8
Hund21484 Selenicereus undatus HOM05D006111 ORTHO05D007683 4.0e-140 501.9 388 66.8
arahy.Tifrunner.gnm1.ann1.M31XXH Arachis hypogaea HOM05D006111 ORTHO05D007683 1.2e-139 500.4 386 67.9
arahy.Tifrunner.gnm1.ann1.YZE6TL Arachis hypogaea HOM05D006111 ORTHO05D007683 1.2e-139 500.4 386 67.9
Aa31LG5G18560 Aethionema arabicum HOM05D006111 ORTHO05D007683 2.0e-139 499.6 374 69.5
Nitab4.5_0001001g0030 Nicotiana tabacum HOM05D006111 ORTHO05D007683 4.4e-139 498.4 374 67.6
vmacro21191 Vaccinium macrocarpon HOM05D006111 ORTHO05D007683 1.7e-138 496.5 456 60.7
Migut.N01606 Erythranthe guttata HOM05D006111 ORTHO05D007683 3.7e-138 495.4 382 66.5
Sabra09G0044000 Salix brachista HOM05D006111 ORTHO05D007683 2.4e-137 492.7 431 63.1
Sopen02g001570 Solanum pennellii HOM05D006111 ORTHO05D007683 7.0e-137 491.1 376 67.8
HanXRQChr09g0260521 Helianthus annuus HOM05D006111 ORTHO05D007683 9.1e-137 490.7 377 67.6
Lj3g0026579 Lotus japonicus HOM05D006111 ORTHO05D007683 9.1e-137 490.7 384 65.1
MSTRG.17026 Avicennia marina HOM05D006111 ORTHO05D007683 1.2e-136 490.3 335 73.4
PGSC0003DMG400006635 Solanum tuberosum HOM05D006111 ORTHO05D007683 1.2e-136 490.3 369 68.0
Solyc02g005200.4 Solanum lycopersicum HOM05D006111 ORTHO05D007683 2.0e-136 489.6 382 66.8
Lsat_1_v5_gn_4_136121 Lactuca sativa HOM05D006111 ORTHO05D007683 1.3e-135 486.9 382 67.8
GSVIVG01032129001 Vitis vinifera HOM05D006111 ORTHO05D007683 3.8e-135 485.3 299 78.3
SGA_v2.0_scaffold24G10670 Striga asiatica HOM05D006111 ORTHO05D007683 7.2e-134 481.1 392 65.3
ATR0332G055 Amborella trichopoda HOM05D006111 ORTHO05D007683 5.7e-131 471.5 382 64.1
Ca_14461_v3 Cicer arietinum L. HOM05D006111 ORTHO05D007683 7.5e-131 471.1 376 63.8
Haze_03183 Corylus avellana HOM05D006111 ORTHO05D007683 2.8e-130 469.2 373 70.2
Rhsim01G0128600 Rhododendron simsii HOM05D006111 ORTHO05D007683 5.4e-129 464.9 491 54.8
Cpa.g.sc125.25 Carica papaya HOM05D006111 ORTHO05D007683 7.0e-129 464.5 423 59.6
Phvul.005G024500 Phaseolus vulgaris HOM05D006111 ORTHO05D007683 5.6e-126 454.9 378 63.0
Lj5C169G9 Lonicera japonica HOM05D006111 ORTHO05D007683 3.6e-125 452.2 283 77.0
Nitab4.5_0000139g0200 Nicotiana tabacum HOM05D006111 ORTHO05D007683 4.7e-125 451.8 351 66.1
Medtr3g030950 Medicago truncatula HOM05D006111 ORTHO05D007683 6.1e-125 451.4 387 61.5
Glyma.15G275900 Glycine max HOM05D006111 ORTHO05D007683 7.5e-123 444.5 386 62.2
Glyma.10G089700 Glycine max HOM05D006111 ORTHO05D007683 1.3e-122 443.7 386 60.4
VMungo1080G1123 Vigna mungo HOM05D006111 ORTHO05D007683 1.3e-122 443.7 378 61.4
unitig_749.g14328 Utricularia gibba HOM05D006111 ORTHO05D007683 1.6e-120 436.8 328 64.9
AUR62043480 Chenopodium quinoa HOM05D006111 ORTHO05D007683 2.7e-120 436.0 388 60.1
HPP92_009763 Vanilla planifolia HOM05D006111 ORTHO05D007683 1.3e-119 433.7 383 61.9
ECA232G4758 Erigeron canadensis HOM05D003880 ORTHO05D004959 6.6e-119 431.4 291 73.5
Psat5g208360 Pisum sativum HOM05D006111 ORTHO05D007683 7.3e-118 427.9 391 59.8
Os02g0610800 Oryza sativa ssp. japonica HOM05D006111 ORTHO05D007683 2.6e-115 419.5 306 66.0
Psat3g069160 Pisum sativum HOM05D006111 ORTHO05D007683 7.5e-115 417.9 296 69.3
AUR62009394 Chenopodium quinoa HOM05D006111 ORTHO05D007683 4.9e-114 415.2 388 58.0
AUR62023076 Chenopodium quinoa HOM05D006111 ORTHO05D007683 2.4e-113 412.9 388 57.2
BcaB03g11554 Brassica carinata HOM05D006111 ORTHO05D007683 3.9e-111 405.6 228 83.8
Actinidia21546 Actinidia chinensis HOM05D006111 ORTHO05D007683 1.2e-107 394.0 375 58.7
CDE05G1285 Ceratophyllum demersum HOM05D006111 ORTHO05D007683 3.7e-106 389.0 364 57.7
A03p35610 Brassica napus HOM05D006111 ORTHO05D007683 7.8e-104 381.3 213 83.6
BolC3t16593H Brassica oleracea HOM05D006111 ORTHO05D007683 7.8e-104 381.3 213 83.6
BraA03t12736Z Brassica rapa HOM05D006111 ORTHO05D007683 7.8e-104 381.3 213 83.6
Medtr3g030975 Medicago truncatula HOM05D006111 ORTHO05D007683 5.1e-95 352.1 213 78.4
Actinidia20661 Actinidia chinensis HOM05D006111 ORTHO05D007683 1.1e-92 344.4 266 67.7
Pp3c6_22710 Physcomitrium patens HOM05D006111 ORTHO05D007683 4.9e-90 335.5 296 55.7
Pp3c5_6760 Physcomitrium patens HOM05D006111 ORTHO05D007683 7.1e-89 331.6 293 55.3
Mapoly0153s0005 Marchantia polymorpha HOM05D006111 ORTHO05D007683 6.0e-88 328.6 353 47.9
Gohir.A08G143600 Gossypium hirsutum HOM05D006111 ORTHO05D007683 1.2e-83 314.3 246 65.9
Zm00001eb246820 Zea mays HOM05D006111 ORTHO05D007683 5.4e-81 305.4 245 60.8
AagrBONN_evm.TU.Sc2ySwM_344.1799 Anthoceros agrestis HOM05D006111 ORTHO05D007683 1.2e-80 304.3 293 49.5
TPR.G35304 Trifolium pratense HOM05D006111 ORTHO05D007683 1.9e-78 297.0 230 65.2
HPP92_009753 Vanilla planifolia HOM05D006111 ORTHO05D007683 3.4e-75 286.2 177 78.0
SMO353G0296 Selaginella moellendorffii HOM05D006111 ORTHO05D007683 6.2e-69 265.4 290 45.9
Prupe.2G016000 Prunus persica HOM05D006111 ORTHO05D007683 8.2e-69 265.0 157 83.4
Cre17.g702500 Chlamydomonas reinhardtii HOM05D006111 ORTHO05D007683 8.7e-63 245.0 287 42.5
QL04p008446 Quercus lobata HOM05D006111 ORTHO05D007683 3.3e-62 243.0 135 85.2
PRCOL_00003534 Prasinoderma coloniale HOM05D006111 ORTHO05D007683 7.4e-62 241.9 304 41.4
MCO10G268 Micromonas commoda HOM05D006111 ORTHO05D007683 1.6e-56 224.2 277 42.6
CBR_g5582 Chara braunii HOM05D006111 ORTHO05D007683 2.1e-40 170.6 161 51.6
HanXRQChr12g0362881 Helianthus annuus HOM05D006111 ORTHO05D007683 8.2e-37 158.7 108 70.4
A03p35600 Brassica napus HOM05D006111 ORTHO05D007683 3.4e-30 136.7 165 52.7
SEGI_00353 Sequoiadendron giganteum HOM05D006111 ORTHO05D007683 1.1e-25 121.7 87 65.5
SEGI_32608 Sequoiadendron giganteum HOM05D006111 ORTHO05D007683 6.1e-24 115.9 157 43.9
CBR_g5588 Chara braunii HOM05D006111 ORTHO05D007683 2.9e-18 97.1 97 52.6
C03p43260 Brassica napus HOM05D006111 ORTHO05D007683 6.6e-18 95.9 48 89.6
BolC3t16595H Brassica oleracea HOM05D006111 ORTHO05D007683 6.6e-18 95.9 48 89.6
HPP92_009752 Vanilla planifolia HOM05D006111 ORTHO05D007683 8.0e-16 89.0 168 40.5
TPR.G36152 Trifolium pratense HOM05D006111 ORTHO05D007683 2.0e-11 74.3 104 42.3
TAR628G1549 Trochodendron aralioides HOM05D006111 ORTHO05D414729 2.3e-07 60.8 41 68.3
Medtr5g055880 Medicago truncatula HOM05D007086 ORTHO05D008927 4.0e-07 60.1 43 65.1


User provided reference genes

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