Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa010777 Carpinus fangiana HOM05D001393 ORTHO05D007477 0.0e+00 1598.6 829 100.0
CiPaw.14G000700 Carya illinoinensis HOM05D001393 ORTHO05D007477 3.4e-307 1058.1 821 71.0
QL04p008271 Quercus lobata HOM05D001393 ORTHO05D007477 1.1e-284 983.4 836 67.8
Prupe.2G015000 Prunus persica HOM05D001393 ORTHO05D007477 3.3e-201 706.1 849 52.1
MD02G1309200 Malus domestica HOM05D001393 ORTHO05D007477 1.7e-189 667.2 853 51.8
Dinv09348 Davidia involucrata HOM05D001393 ORTHO05D007477 8.1e-184 648.3 919 46.8
RcHm_v2.0_Chr1g0316471 Rosa chinensis HOM05D001393 ORTHO05D007477 2.3e-178 630.2 842 48.7
Manes.10G141000 Manihot esculenta HOM05D001393 ORTHO05D007477 5.8e-174 615.5 827 48.0
FAN06G3336 Fragaria x ananassa HOM05D001393 ORTHO05D007477 2.9e-173 613.2 836 48.1
FAN03G3510 Fragaria x ananassa HOM05D001393 ORTHO05D007477 8.4e-173 611.7 836 48.1
FvH4_7g01170 Fragaria vesca HOM05D001393 ORTHO05D007477 5.5e-172 609.0 836 47.8
Atru.chr11.2612 Acer truncatum HOM05D001393 ORTHO05D007477 2.1e-171 607.1 821 48.7
Thecc.01G409700 Theobroma cacao HOM05D001393 ORTHO05D007477 2.1e-171 607.1 845 49.0
Potri.001G265100 Populus trichocarpa HOM05D001393 ORTHO05D007477 7.9e-171 605.1 848 46.9
COL.COLO4_04862 Corchorus olitorius HOM05D001393 ORTHO05D007477 4.8e-168 595.9 854 47.1
FAN03G1765 Fragaria x ananassa HOM05D001393 ORTHO05D007477 6.2e-168 595.5 859 46.7
Ciclev10030722m.g Citrus clementina HOM05D001393 ORTHO05D007477 3.1e-167 593.2 832 47.5
Actinidia21547 Actinidia chinensis HOM05D001393 ORTHO05D007477 7.6e-166 588.6 840 46.3
FAN01G2686 Fragaria x ananassa HOM05D001393 ORTHO05D007477 2.9e-165 586.6 838 46.5
GSVIVG01032121001 Vitis vinifera HOM05D001393 ORTHO05D007477 8.4e-165 585.1 840 48.3
Duzib133G0545 Durio zibethinus HOM05D001393 ORTHO05D007477 1.3e-162 577.8 830 48.1
Sabra16G0162900 Salix brachista HOM05D001393 ORTHO05D007477 1.1e-161 574.7 847 45.3
vmacro13675 Vaccinium macrocarpon HOM05D001393 ORTHO05D007477 1.8e-151 540.8 844 44.0
CANSAT80G1121 Cannabis sativa HOM05D001393 ORTHO05D007477 1.9e-148 530.8 845 43.3
Gohir.A08G143900 Gossypium hirsutum HOM05D001393 ORTHO05D007477 7.2e-148 528.9 866 44.3
Cpa.g.sc125.11 Carica papaya HOM05D001393 ORTHO05D007477 1.6e-147 527.7 783 45.3
Gohir.D08G164900 Gossypium hirsutum HOM05D001393 ORTHO05D007477 8.8e-146 521.9 892 43.6
MELO3C023559.2 Cucumis melo HOM05D001393 ORTHO05D007477 3.3e-145 520.0 885 41.7
Gorai.004G171900 Gossypium raimondii HOM05D001393 ORTHO05D007477 3.3e-145 520.0 898 43.3
Sed0015725 Sechium edule HOM05D001393 ORTHO05D007477 1.5e-142 511.1 847 43.3
Potri.009G060000 Populus trichocarpa HOM05D001393 ORTHO05D007477 2.6e-142 510.4 641 50.5
Eucgr.J01280 Eucalyptus grandis HOM05D001393 ORTHO05D007477 2.2e-141 507.3 857 42.7
CSS0038724 Camellia sinensis var. sinensis HOM05D001393 ORTHO05D007477 3.8e-141 506.5 648 49.7
TWI73G0713 Tripterygium wilfordii HOM05D001393 ORTHO05D007477 2.7e-139 500.4 1021 37.7
ClCG09G004070 Citrullus lanatus HOM05D001393 ORTHO05D007477 6.7e-138 495.7 849 41.7
Nn2g15307 Nelumbo nucifera HOM05D001393 ORTHO05D007477 3.3e-137 493.4 912 39.8
CsaV3_7G030970 Cucumis sativus L. HOM05D001393 ORTHO05D007477 7.0e-135 485.7 861 41.1
MD07G1012500 Malus domestica HOM05D001393 ORTHO05D007477 5.9e-134 482.6 717 47.7
TWI09G0484 Tripterygium wilfordii HOM05D001393 ORTHO05D007477 5.9e-134 482.6 629 48.3
PGR044G2234 Punica granatum HOM05D001393 ORTHO05D007477 1.7e-133 481.1 855 42.9
TAR623G0231 Trochodendron aralioides HOM05D001393 ORTHO05D007477 8.5e-133 478.8 551 51.7
Glyma.09G228900 Glycine max HOM05D001393 ORTHO05D007477 5.5e-124 449.5 884 39.4
Lj3g0000057 Lotus japonicus HOM05D001393 ORTHO05D007477 5.5e-124 449.5 848 40.0
Phvul.011G009600 Phaseolus vulgaris HOM05D001393 ORTHO05D007477 4.7e-123 446.4 891 38.6
Ca_19581_v3 Cicer arietinum L. HOM05D001393 ORTHO05D007477 2.3e-122 444.1 855 39.1
Glyma.12G007700 Glycine max HOM05D001393 ORTHO05D007477 2.2e-120 437.6 896 38.4
arahy.Tifrunner.gnm1.ann1.S6CP9J Arachis hypogaea HOM05D001393 ORTHO05D007477 5.9e-118 429.5 872 38.2
MBI04_g36081_MAGBIO Magnolia biondii HOM05D001393 ORTHO05D007477 7.7e-118 429.1 958 35.8
arahy.Tifrunner.gnm1.ann1.C4Q3NJ Arachis hypogaea HOM05D001393 ORTHO05D007477 6.5e-117 426.0 872 38.1
VMungo1127G2137 Vigna mungo HOM05D001393 ORTHO05D007477 1.2e-115 421.8 894 37.5
Duzib138G1437 Durio zibethinus HOM05D001393 ORTHO05D007477 3.6e-115 420.2 638 47.2
Sabra09G0044200 Salix brachista HOM05D001393 ORTHO05D007477 2.8e-112 410.6 707 41.6
PGSC0003DMG401023992 Solanum tuberosum HOM05D001393 ORTHO05D007477 7.0e-111 406.0 878 36.3
TPR.G3660 Trifolium pratense HOM05D001393 ORTHO05D007477 7.0e-111 406.0 844 38.3
Oeu049495.1 Olea europaea HOM05D001393 ORTHO05D007477 1.6e-110 404.8 879 35.5
Sopen11g002980 Solanum pennellii HOM05D001393 ORTHO05D007477 2.0e-110 404.4 815 37.9
Solyc11g007060.2 Solanum lycopersicum HOM05D001393 ORTHO05D007477 3.8e-109 400.2 810 37.2
CAN.G1513.5 Capsicum annuum HOM05D001393 ORTHO05D007477 6.6e-109 399.4 891 35.4
Sc11g0009120 Simmondsia chinensis HOM05D001393 ORTHO05D007477 6.6e-109 399.4 782 38.7
Psat7g196360 Pisum sativum HOM05D001393 ORTHO05D007477 4.3e-108 396.7 788 39.3
Medtr4g037495 Medicago truncatula HOM05D001393 ORTHO05D007477 1.6e-107 394.8 862 37.2
AUR62023073 Chenopodium quinoa HOM05D001393 ORTHO05D007477 4.0e-106 390.2 831 37.2
Lalb_Chr19g0140311 Lupinus albus HOM05D001393 ORTHO05D007477 9.8e-105 385.6 861 36.5
Cc02_g28120 Coffea canephora HOM05D001393 ORTHO05D007477 1.7e-101 374.8 512 44.9
Nitab4.5_0001761g0330 Nicotiana tabacum HOM05D001393 ORTHO05D007477 1.8e-98 364.8 824 34.6
Nitab4.5_0000001g0230 Nicotiana tabacum HOM05D001393 ORTHO05D007477 1.5e-97 361.7 824 34.5
EL10Ac2g04339 Beta vulgaris HOM05D001393 ORTHO05D007477 2.6e-97 360.9 787 36.1
PSO339G5226 Papaver somniferum HOM05D001393 ORTHO05D007477 9.8e-97 359.0 942 34.6
PSO384G0142 Papaver somniferum HOM05D001393 ORTHO05D007477 4.9e-96 356.7 947 33.6
SalBow7G4183 Salvia bowleyana HOM05D001393 ORTHO05D007477 8.3e-96 355.9 844 36.0
Aqoxy1G00280 Aquilegia oxysepala HOM05D001393 ORTHO05D007477 3.2e-95 354.0 570 42.6
MSTRG.28063 Avicennia marina HOM05D001393 ORTHO05D007477 4.1e-95 353.6 894 34.0
Migut.N01605 Erythranthe guttata HOM05D001393 ORTHO05D007477 3.5e-94 350.5 746 37.9
AUR62009391 Chenopodium quinoa HOM05D001393 ORTHO05D007477 4.7e-91 340.1 815 35.1
Aa31LG11G7400 Aethionema arabicum HOM05D001393 ORTHO05D007477 1.8e-90 338.2 803 35.0
DCAR_029678 Daucus carota HOM05D001393 ORTHO05D007477 1.2e-89 335.5 555 40.4
Hund21482 Selenicereus undatus HOM05D001393 ORTHO05D007477 3.4e-89 334.0 916 34.0
HanXRQChr09g0251311 Helianthus annuus HOM05D001393 ORTHO05D007477 1.7e-88 331.6 745 36.8
SGA_v2.0_scaffold5G02964 Striga asiatica HOM05D001393 ORTHO05D007477 1.6e-86 325.1 882 32.5
Peaxi162Scf00152g01336 Petunia axillaris HOM05D001393 ORTHO05D007477 3.5e-86 323.9 911 32.3
A06p39440 Brassica napus HOM05D001393 ORTHO05D007477 2.3e-85 321.2 786 34.9
BraA06t26859Z Brassica rapa HOM05D001393 ORTHO05D007477 2.3e-85 321.2 786 34.9
Sp2g18440 Schrenkiella parvula HOM05D001393 ORTHO05D007477 5.1e-85 320.1 840 33.8
Dinv43433 Davidia involucrata HOM05D001393 ORTHO05D007477 8.6e-85 319.3 297 60.6
MSTRG.5028 Avicennia marina HOM05D001393 ORTHO05D007477 4.3e-84 317.0 908 32.7
Thhalv10003674m.g Eutrema salsugineum HOM05D001393 ORTHO05D007477 4.3e-84 317.0 813 36.2
AL8G20040 Arabidopsis lyrata HOM05D001393 ORTHO05D007477 1.6e-83 315.1 806 34.1
Carub.0008s0749 Capsella rubella HOM05D001393 ORTHO05D007477 4.0e-82 310.5 815 34.8
AT5G47940 Arabidopsis thaliana HOM05D001393 ORTHO05D007477 8.4e-80 302.8 817 33.0
SalBow6G6124 Salvia bowleyana HOM05D001393 ORTHO05D007477 1.3e-77 295.4 589 37.2
C07p38830 Brassica napus HOM05D001393 ORTHO05D007477 6.6e-77 293.1 785 35.0
BolC7t44402H Brassica oleracea HOM05D001393 ORTHO05D007477 3.3e-76 290.8 785 35.0
CARHR184320 Cardamine hirsuta HOM05D001393 ORTHO05D007477 4.3e-76 290.4 802 33.2
Lsat_1_v5_gn_1_106561 Lactuca sativa HOM05D001393 ORTHO05D007477 7.1e-71 273.1 610 37.0
BcaC06g30834 Brassica carinata HOM05D001393 ORTHO05D007477 2.0e-65 255.0 511 38.7
Lj9A633T62 Lonicera japonica HOM05D001393 ORTHO05D007477 2.0e-65 255.0 636 35.4
unitig_578.g16692 Utricularia gibba HOM05D001393 ORTHO05D007477 4.2e-63 247.3 836 31.2
HPP92_015712 Vanilla planifolia HOM05D001393 ORTHO05D007477 4.6e-62 243.8 639 35.5
CDE05G0268 Ceratophyllum demersum HOM05D001393 ORTHO05D007477 7.9e-62 243.0 824 30.9
HPP92_026649 Vanilla planifolia HOM05D001393 ORTHO05D007477 1.3e-61 242.3 602 35.5
ATR0332G069 Amborella trichopoda HOM05D001393 ORTHO05D007477 2.1e-51 208.4 725 29.8
Ah.10g038800 Amaranthus hybridus HOM05D001393 ORTHO05D007477 6.2e-51 206.8 640 30.5
Os07g0569000 Oryza sativa ssp. japonica HOM05D001393 ORTHO05D007477 7.6e-49 199.9 669 29.9
Zm00001eb324710 Zea mays HOM05D001393 ORTHO05D007477 2.9e-48 198.0 625 29.3
FAN10G3273 Fragaria x ananassa HOM05D001393 ORTHO05D007477 2.5e-47 194.9 164 63.4
ECA248G1228 Erigeron canadensis HOM05D001393 ORTHO05D007477 2.7e-46 191.4 641 32.4
Zm00001eb107220 Zea mays HOM05D001393 ORTHO05D007477 1.8e-45 188.7 639 28.8
Dinv43435 Davidia involucrata HOM05D001393 ORTHO05D007477 4.8e-27 127.5 287 35.5
Dinv43434 Davidia involucrata HOM05D001393 ORTHO05D007477 5.3e-26 124.0 215 40.0
Eucgr.J01288 Eucalyptus grandis HOM05D001393 ORTHO05D007477 1.5e-20 105.9 120 48.3
SEGI_29291 Sequoiadendron giganteum HOM05D020720 ORTHO05D007477 4.8e-11 74.3 585 21.2
FvH4_5g06191 Fragaria vesca HOM05D001393 ORTHO05D007477 3.1e-10 71.6 66 57.6
SEGI_04113 Sequoiadendron giganteum HOM05D020720 ORTHO05D007477 9.1e-10 70.1 395 25.3
SEGI_08002 Sequoiadendron giganteum HOM05D020720 ORTHO05D007477 9.1e-10 70.1 395 25.3
TAR623G1737 Trochodendron aralioides HOM05D001393 ORTHO05D007477 5.5e-07 60.8 318 28.0


User provided reference genes

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