Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa010769 Carpinus fangiana HOM05D006852 ORTHO05D008585 3.0e-126 455.3 247 100.0
CiPaw.14G000200 Carya illinoinensis HOM05D006852 ORTHO05D008585 1.1e-112 410.2 245 91.0
Dinv09352 Davidia involucrata HOM05D006852 ORTHO05D008585 7.4e-101 370.9 245 82.0
Lj3g0018236 Lotus japonicus HOM05D006852 ORTHO05D008585 1.4e-99 366.7 246 82.9
QL04p006320 Quercus lobata HOM05D006852 ORTHO05D008585 9.1e-99 364.0 276 76.4
Glyma.13G202400 Glycine max HOM05D006852 ORTHO05D008585 1.5e-96 356.7 246 79.7
Manes.07G006500 Manihot esculenta HOM05D006852 ORTHO05D008585 2.5e-96 355.9 245 81.6
MD07G1011200 Malus domestica HOM05D006852 ORTHO05D008585 3.0e-94 349.0 249 77.9
Nitab4.5_0000125g0260 Nicotiana tabacum HOM05D006852 ORTHO05D008585 2.0e-93 346.3 248 75.4
Thecc.01G410400 Theobroma cacao HOM05D006852 ORTHO05D008585 2.0e-93 346.3 246 79.3
CAN.G857.11 Capsicum annuum HOM05D006852 ORTHO05D008585 2.6e-93 345.9 246 71.5
Potri.001G266200 Populus trichocarpa HOM05D006852 ORTHO05D008585 3.4e-93 345.5 245 69.0
THA.LOC104801980 Tarenaya hassleriana HOM05D006852 ORTHO05D008585 3.7e-92 342.0 247 71.7
Duzib138G0005 Durio zibethinus HOM05D006852 ORTHO05D008585 4.8e-92 341.7 246 78.5
COL.COLO4_31169 Corchorus olitorius HOM05D006852 ORTHO05D008585 5.4e-91 338.2 246 75.2
FvH4_7g01110 Fragaria vesca HOM05D006852 ORTHO05D008585 5.4e-91 338.2 247 74.1
Gohir.A08G144200 Gossypium hirsutum HOM05D006852 ORTHO05D008585 5.4e-91 338.2 249 76.7
Nitab4.5_0006579g0050 Nicotiana tabacum HOM05D006852 ORTHO05D008585 5.4e-91 338.2 249 75.9
ECA248G0614 Erigeron canadensis HOM05D006852 ORTHO05D008585 1.6e-90 336.7 243 75.3
Hma1.2p1_0293F.1_g116040 Hydrangea macrophylla HOM05D006852 ORTHO05D008585 2.0e-90 336.3 246 69.5
MELO3C023552.2 Cucumis melo HOM05D006852 ORTHO05D008585 5.9e-90 334.7 245 75.9
Lsat_1_v5_gn_1_106940 Lactuca sativa HOM05D006852 ORTHO05D008585 1.3e-89 333.6 246 77.2
FAN06G4754 Fragaria x ananassa HOM05D006852 ORTHO05D008585 1.7e-89 333.2 249 73.5
Atru.chr11.2623 Acer truncatum HOM05D006852 ORTHO05D008585 5.0e-89 331.6 315 57.5
CsaV3_7G031040 Cucumis sativus L. HOM05D006852 ORTHO05D008585 8.5e-89 330.9 254 73.2
TWI79G0862 Tripterygium wilfordii HOM05D006852 ORTHO05D008585 1.1e-88 330.5 248 74.6
Ciclev10032186m.g Citrus clementina HOM05D006852 ORTHO05D008585 1.9e-88 329.7 310 61.6
Eucgr.G03378 Eucalyptus grandis HOM05D006852 ORTHO05D008585 1.9e-88 329.7 256 67.6
Gorai.004G172200 Gossypium raimondii HOM05D006852 ORTHO05D008585 2.5e-88 329.3 177 87.0
RcHm_v2.0_Chr1g0316111 Rosa chinensis HOM05D006852 ORTHO05D008585 2.5e-88 329.3 246 76.4
Psat4g148920 Pisum sativum HOM05D006852 ORTHO05D008585 5.5e-88 328.2 250 76.0
Medtr8g037265 Medicago truncatula HOM05D006852 ORTHO05D008585 9.4e-88 327.4 248 77.4
Nn7g36210 Nelumbo nucifera HOM05D006852 ORTHO05D008585 9.4e-88 327.4 244 74.6
Prupe.2G014400 Prunus persica HOM05D006852 ORTHO05D008585 1.2e-87 327.0 179 85.5
Gohir.D08G165200 Gossypium hirsutum HOM05D006852 ORTHO05D008585 1.6e-87 326.6 177 86.4
Thhalv10026084m.g Eutrema salsugineum HOM05D006852 ORTHO05D008585 2.1e-87 326.2 246 74.0
Carub.0007s2707 Capsella rubella HOM05D006852 ORTHO05D008585 4.7e-87 325.1 246 74.0
CANSAT80G1911 Cannabis sativa HOM05D006852 ORTHO05D008585 8.0e-87 324.3 245 74.7
PSO339G6046 Papaver somniferum HOM05D006852 ORTHO05D008585 8.0e-87 324.3 280 60.0
Sed0010309 Sechium edule HOM05D006852 ORTHO05D008585 1.0e-86 323.9 245 73.1
CARHR221730 Cardamine hirsuta HOM05D006852 ORTHO05D008585 2.3e-86 322.8 246 74.8
Peaxi162Scf00339g00115 Petunia axillaris HOM05D006852 ORTHO05D008585 2.3e-86 322.8 179 83.2
AL7G40800 Arabidopsis lyrata HOM05D006852 ORTHO05D008585 4.0e-86 322.0 274 67.5
HanXRQChr01g0015721 Helianthus annuus HOM05D006852 ORTHO05D008585 4.0e-86 322.0 243 72.8
Sp7g13213 Schrenkiella parvula HOM05D006852 ORTHO05D008585 4.0e-86 322.0 244 73.0
AT4G15030 Arabidopsis thaliana HOM05D006852 ORTHO05D008585 1.5e-85 320.1 274 66.8
BcaNung00310 Brassica carinata HOM05D006852 ORTHO05D008585 1.5e-85 320.1 246 74.4
Phvul.011G211400 Phaseolus vulgaris HOM05D006852 ORTHO05D008585 2.6e-85 319.3 246 74.8
PGR031G2977 Punica granatum HOM05D006852 ORTHO05D008585 3.4e-85 318.9 253 72.7
FAN03G0769 Fragaria x ananassa HOM05D006852 ORTHO05D008585 5.7e-85 318.2 299 63.2
PSO384G4724 Papaver somniferum HOM05D006852 ORTHO05D008585 5.7e-85 318.2 280 60.0
Glyma.12G236900 Glycine max HOM05D006852 ORTHO05D008585 7.5e-85 317.8 179 82.7
Lalb_Chr03g0034091 Lupinus albus HOM05D006852 ORTHO05D008585 7.5e-85 317.8 245 74.7
Actinidia31067 Actinidia chinensis HOM05D006852 ORTHO05D008585 9.8e-85 317.4 178 84.3
PGSC0003DMG400030817 Solanum tuberosum HOM05D006852 ORTHO05D008585 1.3e-84 317.0 179 82.1
C01p28040 Brassica napus HOM05D006852 ORTHO05D008585 1.7e-84 316.6 246 72.4
BolC1t02738H Brassica oleracea HOM05D006852 ORTHO05D008585 3.7e-84 315.5 255 69.0
A01p22510 Brassica napus HOM05D006852 ORTHO05D008585 4.9e-84 315.1 246 72.0
Oeu010800.1 Olea europaea HOM05D006852 ORTHO05D008585 4.9e-84 315.1 167 88.0
BcaC09g50182 Brassica carinata HOM05D006852 ORTHO05D008585 6.3e-84 314.7 246 71.5
EL10Ac2g04333 Beta vulgaris HOM05D006852 ORTHO05D008585 1.1e-83 313.9 306 56.5
arahy.Tifrunner.gnm1.ann1.5TR8MX Arachis hypogaea HOM05D006852 ORTHO05D008585 1.4e-83 313.5 179 81.6
Solyc04g074660.3 Solanum lycopersicum HOM05D006852 ORTHO05D008585 1.8e-83 313.2 240 65.4
vmacro13669 Vaccinium macrocarpon HOM05D006852 ORTHO05D008585 5.4e-83 311.6 299 62.9
Sopen04g029630 Solanum pennellii HOM05D006852 ORTHO05D008585 9.1e-83 310.8 233 67.0
Aa31LG9G2320 Aethionema arabicum HOM05D006852 ORTHO05D008585 1.6e-82 310.1 276 68.5
Rhsim07G0056000 Rhododendron simsii HOM05D006852 ORTHO05D008585 3.8e-81 305.4 274 66.8
ATR0332G098 Amborella trichopoda HOM05D006852 ORTHO05D008585 1.5e-80 303.5 242 70.7
Aqoxy1G00289 Aquilegia oxysepala HOM05D006852 ORTHO05D008585 1.5e-80 303.5 245 68.6
unitig_747.g22049 Utricularia gibba HOM05D006852 ORTHO05D008585 1.9e-80 303.1 251 70.1
AUR62023069 Chenopodium quinoa HOM05D006852 ORTHO05D008585 1.2e-79 300.4 319 52.4
ClCG09G004140 Citrullus lanatus HOM05D006852 ORTHO05D008585 1.2e-79 300.4 312 59.3
Sc10g0000090 Simmondsia chinensis HOM05D006852 ORTHO05D008585 6.1e-79 298.1 276 58.0
FAN10G4066 Fragaria x ananassa HOM05D006852 ORTHO05D008585 1.2e-77 293.9 169 82.8
FAN01G0182 Fragaria x ananassa HOM05D006852 ORTHO05D008585 1.5e-77 293.5 168 83.3
SEGI_37436 Sequoiadendron giganteum HOM05D006852 ORTHO05D008585 5.7e-77 291.6 255 59.6
Zm00001eb115340 Zea mays HOM05D006852 ORTHO05D008585 5.7e-77 291.6 262 67.2
HPP92_009588 Vanilla planifolia HOM05D006852 ORTHO05D008585 2.2e-76 289.7 245 60.4
BraA01t02166Z Brassica rapa HOM05D006852 ORTHO05D008585 3.7e-76 288.9 307 58.6
Sabra16G0163300 Salix brachista HOM05D006852 ORTHO05D008585 3.5e-74 282.3 272 56.2
Ah.10g038820 Amaranthus hybridus HOM05D006852 ORTHO05D008585 9.5e-72 274.2 211 65.9
Os11g0639000 Oryza sativa ssp. japonica HOM05D006852 ORTHO05D008585 2.8e-71 272.7 171 75.4
TPR.G1866 Trifolium pratense HOM05D006852 ORTHO05D008585 1.8e-70 270.0 149 84.6
SHI04066 Sapria himalayana HOM05D006852 ORTHO05D008585 4.0e-70 268.9 245 64.1
Cc02_g28030 Coffea canephora HOM05D006852 ORTHO05D008585 5.2e-70 268.5 147 82.3
VMungo1127G1814 Vigna mungo HOM05D006852 ORTHO05D008585 5.2e-70 268.5 144 85.4
Mapoly0009s0102 Marchantia polymorpha HOM05D006852 ORTHO05D008585 5.4e-67 258.5 179 67.0
AUR62009387 Chenopodium quinoa HOM05D006852 ORTHO05D008585 2.0e-66 256.5 260 53.8
TAR633G0701 Trochodendron aralioides HOM05D006852 ORTHO05D008585 7.8e-66 254.6 144 80.6
MBI04_g36071_MAGBIO Magnolia biondii HOM05D006852 ORTHO05D008585 1.7e-65 253.4 247 65.2
SGA_v2.0_scaffold161G37817 Striga asiatica HOM05D006852 ORTHO05D008585 1.5e-64 250.4 233 59.2
AagrBONN_evm.TU.Sc2ySwM_228.2602 Anthoceros agrestis HOM05D006852 ORTHO05D008585 2.5e-64 249.6 180 65.0
Pp3c2_10540 Physcomitrium patens HOM05D006852 ORTHO05D008585 8.1e-63 244.6 184 63.0
SalBow6G4338 Salvia bowleyana HOM05D006852 ORTHO05D008585 8.9e-62 241.1 265 50.2
CSS0037243 Camellia sinensis var. sinensis HOM05D006852 ORTHO05D008585 7.5e-61 238.0 280 57.9
Hund18974 Selenicereus undatus HOM05D006852 ORTHO05D008585 7.5e-61 238.0 399 41.1
Haze_03202 Corylus avellana HOM05D006852 ORTHO05D008585 1.7e-60 236.9 153 78.4
CSS0019030 Camellia sinensis var. sinensis HOM05D006852 ORTHO05D008585 5.4e-59 231.9 255 60.8
GSVIVG01032100001 Vitis vinifera HOM05D006852 ORTHO05D008585 7.3e-56 221.5 169 78.7
Hma1.2p1_0293F.1_g116050 Hydrangea macrophylla HOM05D006852 ORTHO05D008585 2.1e-55 219.9 124 82.3
arahy.Tifrunner.gnm1.ann1.2WG9D2 Arachis hypogaea HOM05D006852 ORTHO05D008585 2.8e-55 219.5 349 39.8
SalBow6G3774 Salvia bowleyana HOM05D006852 ORTHO05D008585 2.4e-51 206.5 130 73.8
Cre07.g336250 Chlamydomonas reinhardtii HOM05D006852 ORTHO05D008585 6.0e-50 201.8 187 54.0
Oeu049501.1 Olea europaea HOM05D006852 ORTHO05D008585 1.2e-47 194.1 114 81.6
CBR_g4609 Chara braunii HOM05D006852 ORTHO05D008585 4.3e-40 169.1 118 66.1
Migut.N01601 Erythranthe guttata HOM05D006852 ORTHO05D008585 1.4e-38 164.1 97 78.4
SMO239G0058 Selaginella moellendorffii HOM05D006852 ORTHO05D008585 1.2e-37 161.0 113 65.5
MD02G1310300 Malus domestica HOM05D006852 ORTHO05D008585 1.7e-36 157.1 144 57.6
CDE02G4017 Ceratophyllum demersum HOM05D006852 ORTHO05D008585 4.3e-32 142.5 81 81.5
QL11p002033 Quercus lobata HOM05D006852 ORTHO05D008585 7.6e-29 131.7 146 66.4
QL11p002055 Quercus lobata HOM05D006852 ORTHO05D008585 8.4e-28 128.3 165 60.6
QL11p001483 Quercus lobata HOM05D000005 ORTHO05D000012 4.8e-23 112.5 151 59.6
C03p92530 Brassica napus HOM05D006852 ORTHO05D008585 7.1e-19 98.6 122 57.4
Cc02_g28050 Coffea canephora HOM05D006852 ORTHO05D008585 7.4e-08 62.0 36 80.6
CDE02G1038 Ceratophyllum demersum HOM05D005011 ORTHO05D006443 3.7e-07 59.7 35 80.0
Migut.N01602 Erythranthe guttata HOM05D006852 ORTHO05D008585 3.7e-07 59.7 34 79.4
Ca_23889_v3 Cicer arietinum L. HOM05D006852 ORTHO05D008585 4.8e-07 59.3 29 89.7
TPR.G1897 Trifolium pratense HOM05D006852 ORTHO05D008585 5.3e-06 55.8 88 65.9


User provided reference genes

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