Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa010764 Carpinus fangiana HOM05D005174 ORTHO05D006784 7.9e-79 297.0 142 100.0
Haze_00471 Corylus avellana HOM05D005174 ORTHO05D006784 3.9e-38 161.8 89 91.0
Cfa015995 Carpinus fangiana HOM05D005174 ORTHO05D006784 8.5e-33 144.1 82 90.2
QL09p035644 Quercus lobata HOM05D005174 ORTHO05D006784 6.3e-28 127.9 82 80.5
CiPaw.05G223800 Carya illinoinensis HOM05D005174 ORTHO05D006784 4.2e-24 115.2 80 72.5
FAN27G1282 Fragaria x ananassa HOM05D005174 ORTHO05D006784 1.4e-19 100.1 99 55.6
CSS0048949 Camellia sinensis var. sinensis HOM05D005174 ORTHO05D006784 9.1e-19 97.4 98 54.1
Sabra05G0132500 Salix brachista HOM05D005174 ORTHO05D006784 9.1e-19 97.4 83 60.2
CSS0047682 Camellia sinensis var. sinensis HOM05D005174 ORTHO05D006784 1.2e-18 97.1 96 55.2
VMungo1309G0682 Vigna mungo HOM05D005174 ORTHO05D006784 1.2e-18 97.1 96 52.1
Actinidia29457 Actinidia chinensis HOM05D005174 ORTHO05D006784 1.6e-18 96.7 118 44.9
Dinv40398 Davidia involucrata HOM05D005174 ORTHO05D006784 1.6e-18 96.7 96 54.2
Potri.005G175900 Populus trichocarpa HOM05D005174 ORTHO05D006784 1.6e-18 96.7 83 56.6
Nn5g28198 Nelumbo nucifera HOM05D005174 ORTHO05D006784 3.5e-18 95.5 98 54.1
TAR381G1686 Trochodendron aralioides HOM05D005174 ORTHO05D006784 5.9e-18 94.7 82 58.5
arahy.Tifrunner.gnm1.ann1.Z8FB5F Arachis hypogaea HOM05D005174 ORTHO05D006784 7.7e-18 94.4 84 61.9
arahy.Tifrunner.gnm1.ann1.3YB7R6 Arachis hypogaea HOM05D005174 ORTHO05D006784 1.0e-17 94.0 84 60.7
Glyma.06G111200 Glycine max HOM05D005174 ORTHO05D006784 1.0e-17 94.0 100 57.0
COL.COLO4_12205 Corchorus olitorius HOM05D005174 ORTHO05D006784 6.5e-17 91.3 98 53.1
Cc01_g07610 Coffea canephora HOM05D005174 ORTHO05D006784 8.6e-17 90.9 82 56.1
Manes.02G161600 Manihot esculenta HOM05D005174 ORTHO05D006784 8.6e-17 90.9 79 58.2
RhsimUnG0094500 Rhododendron simsii HOM05D005174 ORTHO05D006784 8.6e-17 90.9 84 56.0
GSVIVG01008896001 Vitis vinifera HOM05D005174 ORTHO05D006784 1.1e-16 90.5 79 58.2
Ca_13578_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 2.5e-16 89.4 83 59.0
FvH4_2g26610 Fragaria vesca HOM05D005174 ORTHO05D006784 3.3e-16 89.0 80 58.8
FAN24G0526 Fragaria x ananassa HOM05D005174 ORTHO05D006784 3.3e-16 89.0 80 58.8
FAN20G1758 Fragaria x ananassa HOM05D005174 ORTHO05D006784 4.2e-16 88.6 80 57.5
Lj1g0014313 Lotus japonicus HOM05D005174 ORTHO05D006784 4.2e-16 88.6 98 54.1
Medtr3g072620 Medicago truncatula HOM05D005174 ORTHO05D006784 4.2e-16 88.6 86 57.0
Phvul.009G123200 Phaseolus vulgaris HOM05D005174 ORTHO05D006784 5.5e-16 88.2 82 56.1
Atru.chr13.1416 Acer truncatum HOM05D005174 ORTHO05D006784 7.2e-16 87.8 96 49.0
EL10Ac2g03105 Beta vulgaris HOM05D005174 ORTHO05D006784 9.5e-16 87.4 70 60.0
BraA08t32633Z Brassica rapa HOM05D005174 ORTHO05D006784 9.5e-16 87.4 105 48.6
Duzib116G0013 Durio zibethinus HOM05D005174 ORTHO05D006784 9.5e-16 87.4 93 52.7
A08p06300 Brassica napus HOM05D005174 ORTHO05D006784 1.2e-15 87.0 105 47.6
Duzib093G0119 Durio zibethinus HOM05D005174 ORTHO05D006784 1.2e-15 87.0 65 69.2
Gorai.005G090400 Gossypium raimondii HOM05D005174 ORTHO05D006784 1.2e-15 87.0 96 52.1
Lj5g0013947 Lotus japonicus HOM05D005174 ORTHO05D006784 2.1e-15 86.3 74 60.8
Oeu047941.1 Olea europaea HOM05D005174 ORTHO05D006784 2.1e-15 86.3 73 54.8
Peaxi162Scf00051g00623 Petunia axillaris HOM05D005174 ORTHO05D006784 2.1e-15 86.3 82 53.7
Prupe.1G501000 Prunus persica HOM05D005174 ORTHO05D006784 2.1e-15 86.3 82 57.3
BcaC07g37283 Brassica carinata HOM05D005174 ORTHO05D006784 2.8e-15 85.9 105 46.7
C08p07120 Brassica napus HOM05D005174 ORTHO05D006784 2.8e-15 85.9 105 46.7
BolC8t47557H Brassica oleracea HOM05D005174 ORTHO05D006784 2.8e-15 85.9 105 46.7
MD15G1352500 Malus domestica HOM05D005174 ORTHO05D006784 2.8e-15 85.9 82 57.3
Lj7A337T25 Lonicera japonica HOM05D005174 ORTHO05D006784 4.7e-15 85.1 75 60.0
Psat5g120840 Pisum sativum HOM05D005174 ORTHO05D006784 4.7e-15 85.1 80 58.8
TWI56G0960 Tripterygium wilfordii HOM05D005174 ORTHO05D006784 4.7e-15 85.1 80 52.5
MELO3C032634.2 Cucumis melo HOM05D005174 ORTHO05D006784 6.1e-15 84.7 81 53.1
Eucgr.H00450 Eucalyptus grandis HOM05D005174 ORTHO05D006784 6.1e-15 84.7 77 58.4
Eucgr.L02995 Eucalyptus grandis HOM05D005174 ORTHO05D006784 6.1e-15 84.7 77 58.4
Glyma.14G147200 Glycine max HOM05D005174 ORTHO05D006784 6.1e-15 84.7 74 62.2
Lalb_Chr08g0241531 Lupinus albus HOM05D005174 ORTHO05D006784 6.1e-15 84.7 82 54.9
PGR044G1014 Punica granatum HOM05D005174 ORTHO05D006784 6.1e-15 84.7 76 57.9
Cpa.g.sc36.39 Carica papaya HOM05D005174 ORTHO05D006784 8.0e-15 84.3 78 57.7
Nitab4.5_0000633g0140 Nicotiana tabacum HOM05D005174 ORTHO05D006784 8.0e-15 84.3 96 49.0
SalBow7G2597 Salvia bowleyana HOM05D005174 ORTHO05D006784 8.0e-15 84.3 103 44.7
Nitab4.5_0008211g0030 Nicotiana tabacum HOM05D005174 ORTHO05D006784 1.0e-14 84.0 96 50.0
Sp1g33700 Schrenkiella parvula HOM05D005174 ORTHO05D006784 1.0e-14 84.0 78 56.4
Sc01g0001280 Simmondsia chinensis HOM05D005174 ORTHO05D006784 1.0e-14 84.0 81 53.1
Sc01g0001320 Simmondsia chinensis HOM05D005174 ORTHO05D006784 1.0e-14 84.0 81 53.1
Sopen06g020560 Solanum pennellii HOM05D005174 ORTHO05D006784 1.0e-14 84.0 96 49.0
Thecc.08G122000 Theobroma cacao HOM05D005174 ORTHO05D006784 1.0e-14 84.0 81 54.3
Ciclev10001813m.g Citrus clementina HOM05D005174 ORTHO05D006784 1.4e-14 83.6 82 53.7
BcaB04g17581 Brassica carinata HOM05D005174 ORTHO05D006784 1.8e-14 83.2 78 59.0
Gohir.D02G080900 Gossypium hirsutum HOM05D005174 ORTHO05D006784 1.8e-14 83.2 96 50.0
MBI03_g33021_MAGBIO Magnolia biondii HOM05D005174 ORTHO05D006784 1.8e-14 83.2 83 55.4
RcHm_v2.0_Chr6g0295461 Rosa chinensis HOM05D005174 ORTHO05D006784 1.8e-14 83.2 82 56.1
MSTRG.1457 Avicennia marina HOM05D005174 ORTHO05D006784 2.3e-14 82.8 111 43.2
SGA_v2.0_scaffold52G18977 Striga asiatica HOM05D005174 ORTHO05D006784 2.3e-14 82.8 81 54.3
vmacro00818 Vaccinium macrocarpon HOM05D005174 ORTHO05D006784 3.0e-14 82.4 80 52.5
CsaV3_4G028370 Cucumis sativus L. HOM05D005174 ORTHO05D006784 4.0e-14 82.0 81 51.9
Gohir.A05G233700 Gossypium hirsutum HOM05D005174 ORTHO05D006784 4.0e-14 82.0 70 64.3
Gorai.009G244400 Gossypium raimondii HOM05D005174 ORTHO05D006784 4.0e-14 82.0 70 64.3
AL1G52500 Arabidopsis lyrata HOM05D005174 ORTHO05D006784 6.8e-14 81.3 77 53.2
A10p07300 Brassica napus HOM05D005174 ORTHO05D006784 6.8e-14 81.3 107 48.6
BraSC36t46091Z Brassica rapa HOM05D005174 ORTHO05D006784 6.8e-14 81.3 107 48.6
ClCG11G015640 Citrullus lanatus HOM05D005174 ORTHO05D006784 6.8e-14 81.3 81 50.6
Thhalv10004660m.g Eutrema salsugineum HOM05D005174 ORTHO05D006784 6.8e-14 81.3 70 58.6
Gohir.D05G236100 Gossypium hirsutum HOM05D005174 ORTHO05D006784 6.8e-14 81.3 70 64.3
Lalb_Chr17g0343851 Lupinus albus HOM05D005174 ORTHO05D006784 6.8e-14 81.3 79 58.2
DCAR_017401 Daucus carota HOM05D005174 ORTHO05D006784 8.9e-14 80.9 95 50.5
Thhalv10021201m.g Eutrema salsugineum HOM05D005174 ORTHO05D006784 8.9e-14 80.9 70 58.6
Carub.0001s3538 Capsella rubella HOM05D005174 ORTHO05D006784 1.2e-13 80.5 98 45.9
CAN.G1396.5 Capsicum annuum HOM05D005174 ORTHO05D006784 1.2e-13 80.5 96 46.9
Sed0012589 Sechium edule HOM05D005174 ORTHO05D006784 1.2e-13 80.5 78 51.3
PGSC0003DMG400017574 Solanum tuberosum HOM05D005174 ORTHO05D006784 1.5e-13 80.1 96 46.9
Solyc06g060420.3 Solanum lycopersicum HOM05D005174 ORTHO05D006784 3.4e-13 79.0 96 47.9
Hund24749 Selenicereus undatus HOM05D005174 ORTHO05D006784 4.4e-13 78.6 82 48.8
BcaC08g42881 Brassica carinata HOM05D005174 ORTHO05D006784 5.7e-13 78.2 106 46.2
FAN20G0512 Fragaria x ananassa HOM05D005174 ORTHO05D006784 7.5e-13 77.8 62 64.5
AUR62018164 Chenopodium quinoa HOM05D005174 ORTHO05D006784 9.8e-13 77.4 65 53.8
Ca_03754_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 9.8e-13 77.4 84 52.4
AUR62042433 Chenopodium quinoa HOM05D005174 ORTHO05D006784 1.3e-12 77.0 65 55.4
ECA232G2439 Erigeron canadensis HOM05D005174 ORTHO05D006784 1.7e-12 76.6 81 51.9
FAN15G0922 Fragaria x ananassa HOM05D005174 ORTHO05D006784 1.7e-12 76.6 64 60.9
Psat2g085920 Pisum sativum HOM05D005174 ORTHO05D006784 1.7e-12 76.6 82 53.7
C06p00970 Brassica napus HOM05D005174 ORTHO05D006784 2.8e-12 75.9 108 46.3
AT1G44835 Arabidopsis thaliana HOM05D005174 ORTHO05D006784 3.7e-12 75.5 77 50.6
THA.LOC104806814 Tarenaya hassleriana HOM05D005174 ORTHO05D006784 4.9e-12 75.1 65 61.5
CARHR036100 Cardamine hirsuta HOM05D005174 ORTHO05D006784 6.3e-12 74.7 65 58.5
PSO782G4297 Papaver somniferum HOM05D005174 ORTHO05D006784 6.3e-12 74.7 97 45.4
TPR.G22992 Trifolium pratense HOM05D005174 ORTHO05D006784 6.3e-12 74.7 65 60.0
Ah.10g032020 Amaranthus hybridus HOM05D005174 ORTHO05D006784 1.1e-11 73.9 53 64.2
CANSAT25G0921 Cannabis sativa HOM05D005174 ORTHO05D006784 1.1e-11 73.9 74 50.0
PSO170G4538 Papaver somniferum HOM05D005174 ORTHO05D006784 1.8e-11 73.2 97 44.3
BolC6t35233H Brassica oleracea HOM05D005174 ORTHO05D006784 3.1e-11 72.4 108 45.4
Sabra02G0067100 Salix brachista HOM05D005174 ORTHO05D006784 3.1e-11 72.4 74 50.0
HPP92_001042 Vanilla planifolia HOM05D005174 ORTHO05D006784 3.1e-11 72.4 64 57.8
Aa31LG6G9210 Aethionema arabicum HOM05D005174 ORTHO05D006784 5.4e-11 71.6 63 57.1
ATR0193G024 Amborella trichopoda HOM05D005174 ORTHO05D006784 1.6e-10 70.1 108 38.9
Aqoxy6G00176 Aquilegia oxysepala HOM05D005174 ORTHO05D006784 1.6e-10 70.1 86 47.7
unitig_82.g26987 Utricularia gibba HOM05D005174 ORTHO05D006784 1.6e-10 70.1 97 43.3
Migut.C01145 Erythranthe guttata HOM05D005174 ORTHO05D006784 2.0e-10 69.7 101 41.6
HanXRQChr02g0041151 Helianthus annuus HOM05D005174 ORTHO05D006784 2.0e-10 69.7 81 48.1
Lsat_1_v5_gn_4_135460 Lactuca sativa HOM05D005174 ORTHO05D006784 5.0e-09 65.1 60 56.7
Os02g0767700 Oryza sativa ssp. japonica HOM05D005174 ORTHO05D006784 3.3e-08 62.4 64 54.7
Zm00001eb193560 Zea mays HOM05D005174 ORTHO05D006784 3.3e-08 62.4 83 45.8
CDE05G2191 Ceratophyllum demersum HOM05D005174 ORTHO05D006784 1.4e-06 57.0 83 37.3
Pp3c18_22250 Physcomitrium patens HOM05D005174 ORTHO05D006784 5.2e-06 55.1 69 44.9


User provided reference genes

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