Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa010755 Carpinus fangiana HOM05D004166 ORTHO05D004992 3.0e-31 137.9 69 100.0
Cfa010754 Carpinus fangiana HOM05D004166 ORTHO05D004992 2.1e-29 131.7 69 95.7
QL04p006695 Quercus lobata HOM05D004166 ORTHO05D004992 6.4e-26 120.2 67 85.1
QL04p007896 Quercus lobata HOM05D004166 ORTHO05D004992 6.4e-26 120.2 67 85.1
Thecc.01G411400 Theobroma cacao HOM05D004166 ORTHO05D004992 7.1e-25 116.7 67 80.6
COL.COLO4_23931 Corchorus olitorius HOM05D004166 ORTHO05D004992 2.7e-24 114.8 64 81.2
Ciclev10033564m.g Citrus clementina HOM05D004166 ORTHO05D004992 3.5e-24 114.4 64 81.2
Eucgr.J01270 Eucalyptus grandis HOM05D004166 ORTHO05D004992 6.0e-24 113.6 65 83.1
Gohir.D08G165700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 1.3e-23 112.5 64 81.2
Gorai.004G172800 Gossypium raimondii HOM05D004166 ORTHO05D004992 1.3e-23 112.5 64 81.2
Duzib268G1417 Durio zibethinus HOM05D004166 ORTHO05D004992 3.0e-23 111.3 64 79.7
Gohir.A08G144700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 5.1e-23 110.5 64 79.7
RcHm_v2.0_Chr1g0315891 Rosa chinensis HOM05D004166 ORTHO05D004992 6.6e-23 110.2 65 81.5
Potri.009G061800 Populus trichocarpa HOM05D004166 ORTHO05D004992 1.1e-22 109.4 65 78.5
Prupe.2G012500 Prunus persica HOM05D004166 ORTHO05D004992 1.1e-22 109.4 65 81.5
Psat4g147280 Pisum sativum HOM05D004166 ORTHO05D004992 1.5e-22 109.0 67 71.6
ClCG10G012440 Citrullus lanatus HOM05D004166 ORTHO05D004992 2.5e-22 108.2 65 75.4
CsaV3_3G032210 Cucumis sativus L. HOM05D004166 ORTHO05D004992 2.5e-22 108.2 64 78.1
FAN03G1620 Fragaria x ananassa HOM05D004166 ORTHO05D004992 2.5e-22 108.2 68 75.0
Sabra09G0045800 Salix brachista HOM05D004166 ORTHO05D004992 2.5e-22 108.2 65 76.9
FAN06G0104 Fragaria x ananassa HOM05D004166 ORTHO05D004992 3.3e-22 107.8 68 75.0
FAN10G3917 Fragaria x ananassa HOM05D004166 ORTHO05D004992 3.3e-22 107.8 68 75.0
Manes.07G005600 Manihot esculenta HOM05D004166 ORTHO05D004992 5.6e-22 107.1 64 79.7
MD02G1312900 Malus domestica HOM05D004166 ORTHO05D004992 7.3e-22 106.7 65 78.5
Medtr8g036790 Medicago truncatula HOM05D004166 ORTHO05D004992 9.6e-22 106.3 65 69.2
Sed0019909 Sechium edule HOM05D004166 ORTHO05D004992 1.2e-21 105.9 64 78.1
TPR.G1880 Trifolium pratense HOM05D004166 ORTHO05D004992 1.2e-21 105.9 68 67.6
Glyma.12G237600 Glycine max HOM05D004166 ORTHO05D004992 1.6e-21 105.5 64 76.6
Lalb_Chr03g0034051 Lupinus albus HOM05D004166 ORTHO05D004992 2.8e-21 104.8 64 75.0
MD07G1010200 Malus domestica HOM05D004166 ORTHO05D004992 2.8e-21 104.8 65 80.0
Glyma.08G155100 Glycine max HOM05D004166 ORTHO05D004992 3.6e-21 104.4 68 67.6
Glyma.15G273800 Glycine max HOM05D004166 ORTHO05D004992 3.6e-21 104.4 68 67.6
Phvul.011G212050 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 3.6e-21 104.4 65 75.4
Glyma.13G203200 Glycine max HOM05D004166 ORTHO05D004992 4.7e-21 104.0 64 76.6
Lj3g0024132 Lotus japonicus HOM05D004166 ORTHO05D004992 4.7e-21 104.0 65 76.9
Lalb_Chr01g0008061 Lupinus albus HOM05D004166 ORTHO05D004992 4.7e-21 104.0 64 71.9
Manes.10G143600 Manihot esculenta HOM05D004166 ORTHO05D004992 1.1e-20 102.8 65 76.9
CAN.G1820.4 Capsicum annuum HOM05D004166 ORTHO05D004992 1.4e-20 102.4 68 70.6
Potri.001G267501 Populus trichocarpa HOM05D004166 ORTHO05D004992 3.1e-20 101.3 64 73.4
MD17G1247100 Malus domestica HOM05D004166 ORTHO05D004992 2.6e-19 98.2 65 73.8
CSS0000300 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 7.6e-19 96.7 64 70.3
CSS0007311 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 7.6e-19 96.7 64 70.3
HanXRQChr16g0524541 Helianthus annuus HOM05D004166 ORTHO05D004992 1.3e-18 95.9 64 68.8
CSS0023235 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 1.7e-18 95.5 64 68.8
CiPaw.13G003800 Carya illinoinensis HOM05D004166 ORTHO05D004992 2.9e-18 94.7 63 73.0
PGR044G1658 Punica granatum HOM05D004166 ORTHO05D004992 2.9e-18 94.7 66 65.2
BcaC02g09282 Brassica carinata HOM05D004166 ORTHO05D004992 3.8e-18 94.4 67 61.2
C04p40870 Brassica napus HOM05D004166 ORTHO05D004992 3.8e-18 94.4 67 61.2
BolC4t25673H Brassica oleracea HOM05D004166 ORTHO05D004992 3.8e-18 94.4 67 61.2
Aa31LG10G7180 Aethionema arabicum HOM05D004166 ORTHO05D004992 8.4e-18 93.2 67 61.2
Phvul.005G020900 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 8.4e-18 93.2 63 65.1
Lsat_1_v5_gn_1_107381 Lactuca sativa HOM05D004166 ORTHO05D004992 1.1e-17 92.8 65 63.1
BraA04t16423Z Brassica rapa HOM05D004166 ORTHO05D004992 1.9e-17 92.0 67 59.7
Thhalv10011065m.g Eutrema salsugineum HOM05D004166 ORTHO05D004992 2.4e-17 91.7 67 59.7
A03p48710 Brassica napus HOM05D004166 ORTHO05D004992 3.2e-17 91.3 65 60.0
TAR623G1417 Trochodendron aralioides HOM05D004166 ORTHO05D004992 3.2e-17 91.3 62 71.0
CARHR161830 Cardamine hirsuta HOM05D004166 ORTHO05D004992 5.4e-17 90.5 65 58.5
HanXRQChr17g0562911 Helianthus annuus HOM05D004166 ORTHO05D004992 5.4e-17 90.5 64 65.6
Sp5g10190 Schrenkiella parvula HOM05D004166 ORTHO05D004992 5.4e-17 90.5 67 58.2
AL5G32660 Arabidopsis lyrata HOM05D004166 ORTHO05D004992 7.1e-17 90.1 65 60.0
Cfa016852 Carpinus fangiana HOM05D004166 ORTHO05D004992 9.3e-17 89.7 62 67.7
BcaB02g08588 Brassica carinata HOM05D004166 ORTHO05D004992 1.2e-16 89.4 60 65.0
Potri.016G053400 Populus trichocarpa HOM05D004166 ORTHO05D004992 1.2e-16 89.4 56 75.0
QL07p021398 Quercus lobata HOM05D004166 ORTHO05D004992 1.2e-16 89.4 62 69.4
CiPaw.09G035600 Carya illinoinensis HOM05D004166 ORTHO05D004992 2.1e-16 88.6 62 67.7
Gohir.A01G196400 Gossypium hirsutum HOM05D004166 ORTHO05D004992 2.1e-16 88.6 57 73.7
Gorai.002G230100 Gossypium raimondii HOM05D004166 ORTHO05D004992 2.1e-16 88.6 57 73.7
AT3G52105 Arabidopsis thaliana HOM05D004166 ORTHO05D004992 2.7e-16 88.2 65 58.5
BraA03t13971Z Brassica rapa HOM05D003531 ORTHO05D004354 2.7e-16 88.2 62 59.7
COL.COLO4_28154 Corchorus olitorius HOM05D004166 ORTHO05D004992 2.7e-16 88.2 59 71.2
Carub.0005s1843 Capsella rubella HOM05D004166 ORTHO05D004992 4.6e-16 87.4 60 61.7
HanXRQChr11g0338921 Helianthus annuus HOM05D004166 ORTHO05D004992 4.6e-16 87.4 68 61.8
RcHm_v2.0_Chr3g0481271 Rosa chinensis HOM05D004166 ORTHO05D004992 4.6e-16 87.4 62 67.7
Duzib093G1037 Durio zibethinus HOM05D004166 ORTHO05D004992 6.0e-16 87.0 57 71.9
Gohir.D01G186700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 6.0e-16 87.0 57 71.9
ClCG04G000820 Citrullus lanatus HOM05D004166 ORTHO05D004992 7.8e-16 86.7 57 73.7
MD14G1068000 Malus domestica HOM05D004166 ORTHO05D004992 1.0e-15 86.3 62 64.5
Manes.08G048600 Manihot esculenta HOM05D004166 ORTHO05D004992 1.0e-15 86.3 65 63.1
Dinv18078 Davidia involucrata HOM05D002477 ORTHO05D000502 1.3e-15 85.9 67 61.2
Nn7g36123 Nelumbo nucifera HOM05D005711 ORTHO05D007125 1.3e-15 85.9 62 69.4
C07p46800 Brassica napus HOM05D004166 ORTHO05D004992 2.3e-15 85.1 57 61.4
BolC7t45197H Brassica oleracea HOM05D004166 ORTHO05D004992 2.3e-15 85.1 57 61.4
Dinv24131 Davidia involucrata HOM05D004166 ORTHO05D004992 2.3e-15 85.1 64 64.1
Thecc.05G161200 Theobroma cacao HOM05D002477 ORTHO05D001927 2.3e-15 85.1 57 71.9
Hma1.2p1_0621F.1_g190840 Hydrangea macrophylla HOM05D004166 ORTHO05D004992 3.9e-15 84.3 62 64.5
MD12G1067900 Malus domestica HOM05D004166 ORTHO05D004992 6.6e-15 83.6 61 62.3
Nn2g15481 Nelumbo nucifera HOM05D004166 ORTHO05D004992 6.6e-15 83.6 58 67.2
Nn2g15482 Nelumbo nucifera HOM05D004166 ORTHO05D004992 6.6e-15 83.6 58 67.2
CiPaw.10G031600 Carya illinoinensis HOM05D004166 ORTHO05D004992 1.1e-14 82.8 62 66.1
Prupe.7G066300 Prunus persica HOM05D004166 ORTHO05D004992 1.1e-14 82.8 62 61.3
Eucgr.A02389 Eucalyptus grandis HOM05D004166 ORTHO05D004992 1.5e-14 82.4 62 61.3
Lsat_1_v5_gn_4_31680 Lactuca sativa HOM05D004166 ORTHO05D004992 1.5e-14 82.4 50 80.0
Manes.09G026700 Manihot esculenta HOM05D004166 ORTHO05D004992 1.5e-14 82.4 57 70.2
Sc11g0009220 Simmondsia chinensis HOM05D004166 ORTHO05D004992 1.5e-14 82.4 65 55.4
CsaV3_4G031350 Cucumis sativus L. HOM05D004166 ORTHO05D004992 1.9e-14 82.0 57 68.4
FAN02G1185 Fragaria x ananassa HOM05D004166 ORTHO05D004992 1.9e-14 82.0 62 64.5
BolC8t50354H Brassica oleracea HOM05D004166 ORTHO05D004992 2.5e-14 81.6 67 53.7
BraA09t39979Z Brassica rapa HOM05D004166 ORTHO05D004992 2.5e-14 81.6 67 53.7
SalBow5G4904 Salvia bowleyana HOM05D004166 ORTHO05D004992 2.5e-14 81.6 61 63.9
SalBow8G3607 Salvia bowleyana HOM05D004166 ORTHO05D004992 2.5e-14 81.6 61 63.9
TAR633G2178 Trochodendron aralioides HOM05D004166 ORTHO05D004992 2.5e-14 81.6 58 63.8
Sed0018203 Sechium edule HOM05D004166 ORTHO05D004992 3.3e-14 81.3 68 63.2
Cc06_g16690 Coffea canephora HOM05D004166 ORTHO05D004992 5.6e-14 80.5 58 63.8
FAN09G2989 Fragaria x ananassa HOM05D004166 ORTHO05D004992 5.6e-14 80.5 60 65.0
Lalb_Chr25g0283111 Lupinus albus HOM05D004166 ORTHO05D004992 5.6e-14 80.5 58 63.8
BcaB01g00441 Brassica carinata HOM05D004166 ORTHO05D004992 7.3e-14 80.1 67 52.2
BcaB01g00442 Brassica carinata HOM05D004166 ORTHO05D004992 7.3e-14 80.1 67 52.2
C08p27370 Brassica napus HOM05D004166 ORTHO05D004992 7.3e-14 80.1 67 52.2
Ciclev10006904m.g Citrus clementina HOM05D004166 ORTHO05D004992 9.6e-14 79.7 59 62.7
Atru.chr11.2657 Acer truncatum HOM05D004166 ORTHO05D004992 1.3e-13 79.3 66 60.6
MBI01_g18886_MAGBIO Magnolia biondii HOM05D004166 ORTHO05D004992 1.3e-13 79.3 62 66.1
BcaB01g00445 Brassica carinata HOM05D004166 ORTHO05D004992 2.1e-13 78.6 60 55.0
HanXRQChr13g0390681 Helianthus annuus HOM05D004166 ORTHO05D004992 2.1e-13 78.6 67 58.2
Potri.006G054200 Populus trichocarpa HOM05D004166 ORTHO05D004992 2.1e-13 78.6 57 66.7
TPR.G4007 Trifolium pratense HOM05D004166 ORTHO05D004992 2.1e-13 78.6 68 57.4
Migut.B01024 Erythranthe guttata HOM05D004166 ORTHO05D004992 6.2e-13 77.0 59 62.7
Migut.N01590 Erythranthe guttata HOM05D004166 ORTHO05D004992 6.2e-13 77.0 65 53.8
SalBow6G5402 Salvia bowleyana HOM05D004166 ORTHO05D004992 8.1e-13 76.6 63 52.4
SalBow8G1301 Salvia bowleyana HOM05D004166 ORTHO05D004992 8.1e-13 76.6 63 52.4
ECA248G3658 Erigeron canadensis HOM05D004166 ORTHO05D004992 1.1e-12 76.3 51 68.6
Lsat_1_v5_gn_5_162620 Lactuca sativa HOM05D004166 ORTHO05D004992 1.8e-12 75.5 67 55.2
Medtr3g028700 Medicago truncatula HOM05D004166 ORTHO05D004992 1.8e-12 75.5 62 56.5
Migut.B01304 Erythranthe guttata HOM05D004166 ORTHO05D004992 2.4e-12 75.1 59 59.3
HPP92_024883 Vanilla planifolia HOM05D004166 ORTHO05D004992 3.1e-12 74.7 62 62.9
Ah.13g076280 Amaranthus hybridus HOM05D004166 ORTHO05D004992 4.0e-12 74.3 62 54.8
CSS0009527 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 5.3e-12 73.9 56 62.5
CSS0050097 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 5.3e-12 73.9 56 62.5
AUR62024406 Chenopodium quinoa HOM05D004166 ORTHO05D004992 5.3e-12 73.9 62 54.8
AUR62025999 Chenopodium quinoa HOM05D004166 ORTHO05D004992 5.3e-12 73.9 62 54.8
CSS0020291 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 6.9e-12 73.6 62 56.5
CSS0041805 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 6.9e-12 73.6 62 56.5
Sc25g0005250 Simmondsia chinensis HOM05D004166 ORTHO05D004992 6.9e-12 73.6 62 56.5
HanXRQChr01g0008671 Helianthus annuus HOM05D004166 ORTHO05D004992 2.6e-11 71.6 67 52.2
Medtr7g092170 Medicago truncatula HOM05D004166 ORTHO05D004992 3.4e-11 71.2 62 53.2
unitig_699.g19651 Utricularia gibba HOM05D004166 ORTHO05D004992 3.4e-11 71.2 68 52.9
Hma1.2p1_0293F.1_g116190 Hydrangea macrophylla HOM05D004166 ORTHO05D004992 5.8e-11 70.5 51 68.6
Actinidia17245 Actinidia chinensis HOM05D004166 ORTHO05D004992 7.6e-11 70.1 67 50.7
arahy.Tifrunner.gnm1.ann1.H3MDMT Arachis hypogaea HOM05D004166 ORTHO05D004992 2.2e-10 68.6 57 54.4
arahy.Tifrunner.gnm1.ann1.UUFG8W Arachis hypogaea HOM05D004166 ORTHO05D004992 2.2e-10 68.6 57 54.4
Sc14g0005090 Simmondsia chinensis HOM05D004166 ORTHO05D004992 4.9e-10 67.4 57 54.4
Glyma.03G138700 Glycine max HOM05D004166 ORTHO05D004992 6.4e-10 67.0 62 51.6
TPR.G15223 Trifolium pratense HOM05D004166 ORTHO05D004992 6.4e-10 67.0 67 50.7
Sc13g0001900 Simmondsia chinensis HOM05D004166 ORTHO05D004992 8.4e-10 66.6 62 54.8
Lalb_Chr20g0110831 Lupinus albus HOM05D004166 ORTHO05D004992 1.9e-09 65.5 62 46.8
BcaNung06092 Brassica carinata HOM05D004166 ORTHO05D004992 2.4e-09 65.1 67 47.8
Nitab4.5_0000634g0190 Nicotiana tabacum HOM05D004166 ORTHO05D004992 3.2e-09 64.7 41 80.5
Phvul.001G136000 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 3.2e-09 64.7 62 43.5
SalBow1G3711 Salvia bowleyana HOM05D004166 ORTHO05D004992 3.2e-09 64.7 58 58.6
AUR62009381 Chenopodium quinoa HOM05D004166 ORTHO05D004992 5.4e-09 63.9 52 59.6
EL10Ac2g04320 Beta vulgaris HOM05D004166 ORTHO05D004992 7.1e-09 63.5 52 57.7
SGA_v2.0_scaffold453G51858 Striga asiatica HOM05D004166 ORTHO05D004992 7.1e-09 63.5 58 53.4
AUR62023062 Chenopodium quinoa HOM05D004166 ORTHO05D004992 9.3e-09 63.2 52 59.6
Lalb_Chr01g0017501 Lupinus albus HOM05D004166 ORTHO05D004992 3.5e-08 61.2 62 45.2
SalBow1G3538 Salvia bowleyana HOM05D004166 ORTHO05D004992 3.5e-08 61.2 55 58.2
Zm00001eb256610 Zea mays HOM05D004166 ORTHO05D004992 4.6e-08 60.8 58 56.9
Zm00001eb005680 Zea mays HOM05D004166 ORTHO05D004992 6.0e-08 60.5 58 55.2
AUR62027418 Chenopodium quinoa HOM05D004166 ORTHO05D004992 1.0e-07 59.7 56 53.6
Zm00001eb402020 Zea mays HOM05D004166 ORTHO05D004992 1.0e-07 59.7 58 55.2
Zm00001eb018710 Zea mays HOM05D004166 ORTHO05D004992 1.3e-07 59.3 58 56.9
Zm00001eb056460 Zea mays HOM05D004166 ORTHO05D004992 1.8e-07 58.9 58 56.9
Zm00001eb076920 Zea mays HOM05D004166 ORTHO05D004992 1.8e-07 58.9 58 58.6
Migut.J01778 Erythranthe guttata HOM05D004166 ORTHO05D004992 3.0e-07 58.2 50 56.0
DCAR_016996 Daucus carota HOM05D004166 ORTHO05D004992 3.9e-07 57.8 61 49.2
Zm00001eb272450 Zea mays HOM05D004166 ORTHO05D004992 3.9e-07 57.8 58 53.4
Os03g0174800 Oryza sativa ssp. japonica HOM05D004166 ORTHO05D004992 5.1e-07 57.4 58 55.2
Actinidia09355 Actinidia chinensis HOM05D004166 ORTHO05D004992 3.3e-06 54.7 46 58.7


User provided reference genes

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