Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa010754 Carpinus fangiana HOM05D004166 ORTHO05D004992 2.3e-31 138.3 69 100.0
Cfa010755 Carpinus fangiana HOM05D004166 ORTHO05D004992 2.8e-29 131.3 69 95.7
QL04p006695 Quercus lobata HOM05D004166 ORTHO05D004992 2.1e-24 115.2 67 82.1
QL04p007896 Quercus lobata HOM05D004166 ORTHO05D004992 2.1e-24 115.2 67 82.1
Thecc.01G411400 Theobroma cacao HOM05D004166 ORTHO05D004992 3.9e-23 110.9 67 77.6
COL.COLO4_23931 Corchorus olitorius HOM05D004166 ORTHO05D004992 1.9e-22 108.6 64 78.1
Ciclev10033564m.g Citrus clementina HOM05D004166 ORTHO05D004992 4.3e-22 107.5 64 76.6
Eucgr.J01270 Eucalyptus grandis HOM05D004166 ORTHO05D004992 7.3e-22 106.7 65 78.5
Gohir.D08G165700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 9.6e-22 106.3 64 78.1
Gorai.004G172800 Gossypium raimondii HOM05D004166 ORTHO05D004992 9.6e-22 106.3 64 78.1
Duzib268G1417 Durio zibethinus HOM05D004166 ORTHO05D004992 2.1e-21 105.1 64 76.6
Gohir.A08G144700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 3.6e-21 104.4 64 76.6
RcHm_v2.0_Chr1g0315891 Rosa chinensis HOM05D004166 ORTHO05D004992 8.1e-21 103.2 65 76.9
Psat4g147280 Pisum sativum HOM05D004166 ORTHO05D004992 1.4e-20 102.4 67 67.2
Potri.009G061800 Populus trichocarpa HOM05D004166 ORTHO05D004992 1.4e-20 102.4 65 73.8
Prupe.2G012500 Prunus persica HOM05D004166 ORTHO05D004992 1.4e-20 102.4 65 76.9
ClCG10G012440 Citrullus lanatus HOM05D004166 ORTHO05D004992 2.4e-20 101.7 65 70.8
FAN03G1620 Fragaria x ananassa HOM05D004166 ORTHO05D004992 2.4e-20 101.7 68 70.6
Sabra09G0045800 Salix brachista HOM05D004166 ORTHO05D004992 2.4e-20 101.7 65 72.3
CsaV3_3G032210 Cucumis sativus L. HOM05D004166 ORTHO05D004992 3.1e-20 101.3 64 73.4
FAN06G0104 Fragaria x ananassa HOM05D004166 ORTHO05D004992 3.1e-20 101.3 68 70.6
FAN10G3917 Fragaria x ananassa HOM05D004166 ORTHO05D004992 3.1e-20 101.3 68 70.6
Manes.07G005600 Manihot esculenta HOM05D004166 ORTHO05D004992 6.9e-20 100.1 64 75.0
MD02G1312900 Malus domestica HOM05D004166 ORTHO05D004992 8.9e-20 99.8 65 73.8
Medtr8g036790 Medicago truncatula HOM05D004166 ORTHO05D004992 8.9e-20 99.8 65 64.6
TPR.G1880 Trifolium pratense HOM05D004166 ORTHO05D004992 1.2e-19 99.4 68 63.2
Sed0019909 Sechium edule HOM05D004166 ORTHO05D004992 1.5e-19 99.0 64 73.4
Glyma.12G237600 Glycine max HOM05D004166 ORTHO05D004992 2.0e-19 98.6 64 71.9
Glyma.08G155100 Glycine max HOM05D004166 ORTHO05D004992 3.4e-19 97.8 68 63.2
Glyma.15G273800 Glycine max HOM05D004166 ORTHO05D004992 3.4e-19 97.8 68 63.2
Lalb_Chr01g0008061 Lupinus albus HOM05D004166 ORTHO05D004992 3.4e-19 97.8 64 68.8
Lalb_Chr03g0034051 Lupinus albus HOM05D004166 ORTHO05D004992 3.4e-19 97.8 64 70.3
MD07G1010200 Malus domestica HOM05D004166 ORTHO05D004992 3.4e-19 97.8 65 75.4
Phvul.011G212050 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 3.4e-19 97.8 65 70.8
Lj3g0024132 Lotus japonicus HOM05D004166 ORTHO05D004992 4.4e-19 97.4 65 72.3
Glyma.13G203200 Glycine max HOM05D004166 ORTHO05D004992 5.8e-19 97.1 64 71.9
CAN.G1820.4 Capsicum annuum HOM05D004166 ORTHO05D004992 1.3e-18 95.9 68 66.2
Manes.10G143600 Manihot esculenta HOM05D004166 ORTHO05D004992 1.3e-18 95.9 65 72.3
Potri.001G267501 Populus trichocarpa HOM05D004166 ORTHO05D004992 3.8e-18 94.4 64 68.8
BcaC02g09282 Brassica carinata HOM05D004166 ORTHO05D004992 8.4e-18 93.2 67 62.7
C04p40870 Brassica napus HOM05D004166 ORTHO05D004992 8.4e-18 93.2 67 62.7
BolC4t25673H Brassica oleracea HOM05D004166 ORTHO05D004992 8.4e-18 93.2 67 62.7
MD17G1247100 Malus domestica HOM05D004166 ORTHO05D004992 1.1e-17 92.8 65 70.8
Aa31LG10G7180 Aethionema arabicum HOM05D004166 ORTHO05D004992 1.9e-17 92.0 67 62.7
BraA04t16423Z Brassica rapa HOM05D004166 ORTHO05D004992 4.2e-17 90.9 67 61.2
Thhalv10011065m.g Eutrema salsugineum HOM05D004166 ORTHO05D004992 5.4e-17 90.5 67 61.2
PGR044G1658 Punica granatum HOM05D004166 ORTHO05D004992 5.4e-17 90.5 66 63.6
A03p48710 Brassica napus HOM05D004166 ORTHO05D004992 7.1e-17 90.1 65 61.5
CSS0000300 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 9.3e-17 89.7 64 65.6
CSS0007311 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 9.3e-17 89.7 64 65.6
CiPaw.13G003800 Carya illinoinensis HOM05D004166 ORTHO05D004992 9.3e-17 89.7 63 69.8
CARHR161830 Cardamine hirsuta HOM05D004166 ORTHO05D004992 1.2e-16 89.4 65 60.0
Sp5g10190 Schrenkiella parvula HOM05D004166 ORTHO05D004992 1.2e-16 89.4 67 59.7
AL5G32660 Arabidopsis lyrata HOM05D004166 ORTHO05D004992 1.6e-16 89.0 65 61.5
HanXRQChr16g0524541 Helianthus annuus HOM05D004166 ORTHO05D004992 1.6e-16 89.0 64 64.1
CSS0023235 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 2.1e-16 88.6 64 64.1
BcaB02g08588 Brassica carinata HOM05D004166 ORTHO05D004992 2.7e-16 88.2 60 66.7
AT3G52105 Arabidopsis thaliana HOM05D004166 ORTHO05D004992 6.0e-16 87.0 65 60.0
BraA03t13971Z Brassica rapa HOM05D003531 ORTHO05D004354 7.8e-16 86.7 62 61.3
Phvul.005G020900 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 7.8e-16 86.7 63 61.9
Carub.0005s1843 Capsella rubella HOM05D004166 ORTHO05D004992 1.0e-15 86.3 60 63.3
Lsat_1_v5_gn_1_107381 Lactuca sativa HOM05D004166 ORTHO05D004992 1.0e-15 86.3 65 58.5
TAR623G1417 Trochodendron aralioides HOM05D004166 ORTHO05D004992 3.0e-15 84.7 62 67.7
Gohir.A01G196400 Gossypium hirsutum HOM05D004166 ORTHO05D004992 5.1e-15 84.0 57 70.2
Gorai.002G230100 Gossypium raimondii HOM05D004166 ORTHO05D004992 5.1e-15 84.0 57 70.2
C07p46800 Brassica napus HOM05D004166 ORTHO05D004992 6.6e-15 83.6 57 63.2
BolC7t45197H Brassica oleracea HOM05D004166 ORTHO05D004992 6.6e-15 83.6 57 63.2
Gohir.D01G186700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 6.6e-15 83.6 57 70.2
HanXRQChr17g0562911 Helianthus annuus HOM05D004166 ORTHO05D004992 6.6e-15 83.6 64 60.9
Cfa016852 Carpinus fangiana HOM05D004166 ORTHO05D004992 1.1e-14 82.8 62 62.9
RcHm_v2.0_Chr3g0481271 Rosa chinensis HOM05D004166 ORTHO05D004992 1.1e-14 82.8 62 64.5
MD12G1067900 Malus domestica HOM05D004166 ORTHO05D004992 1.5e-14 82.4 61 62.3
Potri.016G053400 Populus trichocarpa HOM05D004166 ORTHO05D004992 1.5e-14 82.4 56 69.6
QL07p021398 Quercus lobata HOM05D004166 ORTHO05D004992 1.5e-14 82.4 62 64.5
ClCG04G000820 Citrullus lanatus HOM05D004166 ORTHO05D004992 1.9e-14 82.0 57 70.2
CiPaw.09G035600 Carya illinoinensis HOM05D004166 ORTHO05D004992 2.5e-14 81.6 62 62.9
COL.COLO4_28154 Corchorus olitorius HOM05D004166 ORTHO05D004992 3.3e-14 81.3 59 66.1
HanXRQChr11g0338921 Helianthus annuus HOM05D004166 ORTHO05D004992 4.3e-14 80.9 68 57.4
BolC8t50354H Brassica oleracea HOM05D004166 ORTHO05D004992 5.6e-14 80.5 67 55.2
BraA09t39979Z Brassica rapa HOM05D004166 ORTHO05D004992 5.6e-14 80.5 67 55.2
Duzib093G1037 Durio zibethinus HOM05D004166 ORTHO05D004992 7.3e-14 80.1 57 66.7
Sc11g0009220 Simmondsia chinensis HOM05D004166 ORTHO05D004992 7.3e-14 80.1 65 53.8
Dinv18078 Davidia involucrata HOM05D002477 ORTHO05D000502 9.6e-14 79.7 67 58.2
Manes.08G048600 Manihot esculenta HOM05D004166 ORTHO05D004992 9.6e-14 79.7 65 58.5
FAN02G1185 Fragaria x ananassa HOM05D004166 ORTHO05D004992 1.3e-13 79.3 62 62.9
MD14G1068000 Malus domestica HOM05D004166 ORTHO05D004992 1.3e-13 79.3 62 59.7
BcaB01g00441 Brassica carinata HOM05D004166 ORTHO05D004992 1.6e-13 79.0 67 53.7
BcaB01g00442 Brassica carinata HOM05D004166 ORTHO05D004992 1.6e-13 79.0 67 53.7
C08p27370 Brassica napus HOM05D004166 ORTHO05D004992 1.6e-13 79.0 67 53.7
Nn7g36123 Nelumbo nucifera HOM05D005711 ORTHO05D007125 1.6e-13 79.0 62 64.5
Dinv24131 Davidia involucrata HOM05D004166 ORTHO05D004992 2.1e-13 78.6 64 60.9
Thecc.05G161200 Theobroma cacao HOM05D002477 ORTHO05D001927 2.8e-13 78.2 57 66.7
FAN09G2989 Fragaria x ananassa HOM05D004166 ORTHO05D004992 3.6e-13 77.8 60 63.3
BcaB01g00445 Brassica carinata HOM05D004166 ORTHO05D004992 4.8e-13 77.4 60 56.7
CsaV3_4G031350 Cucumis sativus L. HOM05D004166 ORTHO05D004992 4.8e-13 77.4 57 64.9
Hma1.2p1_0621F.1_g190840 Hydrangea macrophylla HOM05D004166 ORTHO05D004992 4.8e-13 77.4 62 59.7
MBI01_g18886_MAGBIO Magnolia biondii HOM05D004166 ORTHO05D004992 6.2e-13 77.0 62 64.5
Atru.chr11.2657 Acer truncatum HOM05D004166 ORTHO05D004992 8.1e-13 76.6 66 59.1
HanXRQChr13g0390681 Helianthus annuus HOM05D004166 ORTHO05D004992 8.1e-13 76.6 67 56.7
Nn2g15481 Nelumbo nucifera HOM05D004166 ORTHO05D004992 8.1e-13 76.6 58 62.1
Nn2g15482 Nelumbo nucifera HOM05D004166 ORTHO05D004992 8.1e-13 76.6 58 62.1
TPR.G4007 Trifolium pratense HOM05D004166 ORTHO05D004992 1.1e-12 76.3 68 55.9
CiPaw.10G031600 Carya illinoinensis HOM05D004166 ORTHO05D004992 1.4e-12 75.9 62 61.3
Prupe.7G066300 Prunus persica HOM05D004166 ORTHO05D004992 1.4e-12 75.9 62 56.5
Eucgr.A02389 Eucalyptus grandis HOM05D004166 ORTHO05D004992 1.8e-12 75.5 62 56.5
Lsat_1_v5_gn_4_31680 Lactuca sativa HOM05D004166 ORTHO05D004992 1.8e-12 75.5 50 74.0
Manes.09G026700 Manihot esculenta HOM05D004166 ORTHO05D004992 1.8e-12 75.5 57 64.9
SalBow5G4904 Salvia bowleyana HOM05D004166 ORTHO05D004992 3.1e-12 74.7 61 59.0
SalBow8G3607 Salvia bowleyana HOM05D004166 ORTHO05D004992 3.1e-12 74.7 61 59.0
Sed0018203 Sechium edule HOM05D004166 ORTHO05D004992 3.1e-12 74.7 68 58.8
TAR633G2178 Trochodendron aralioides HOM05D004166 ORTHO05D004992 3.1e-12 74.7 58 58.6
Lalb_Chr25g0283111 Lupinus albus HOM05D004166 ORTHO05D004992 4.0e-12 74.3 58 60.3
Cc06_g16690 Coffea canephora HOM05D004166 ORTHO05D004992 5.3e-12 73.9 58 60.3
Potri.006G054200 Populus trichocarpa HOM05D004166 ORTHO05D004992 5.3e-12 73.9 57 63.2
Medtr3g028700 Medicago truncatula HOM05D004166 ORTHO05D004992 9.0e-12 73.2 62 54.8
Ciclev10006904m.g Citrus clementina HOM05D004166 ORTHO05D004992 1.2e-11 72.8 59 57.6
Migut.N01590 Erythranthe guttata HOM05D004166 ORTHO05D004992 1.2e-11 72.8 65 50.8
Lsat_1_v5_gn_5_162620 Lactuca sativa HOM05D004166 ORTHO05D004992 1.2e-11 72.8 67 53.7
SalBow6G5402 Salvia bowleyana HOM05D004166 ORTHO05D004992 2.0e-11 72.0 63 49.2
SalBow8G1301 Salvia bowleyana HOM05D004166 ORTHO05D004992 2.0e-11 72.0 63 49.2
Sc25g0005250 Simmondsia chinensis HOM05D004166 ORTHO05D004992 5.8e-11 70.5 62 54.8
Migut.B01024 Erythranthe guttata HOM05D004166 ORTHO05D004992 7.6e-11 70.1 59 57.6
ECA248G3658 Erigeron canadensis HOM05D004166 ORTHO05D004992 1.3e-10 69.3 51 62.7
CSS0009527 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 1.7e-10 68.9 56 60.7
CSS0050097 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 1.7e-10 68.9 56 60.7
HanXRQChr01g0008671 Helianthus annuus HOM05D004166 ORTHO05D004992 1.7e-10 68.9 67 50.7
HPP92_024883 Vanilla planifolia HOM05D004166 ORTHO05D004992 1.7e-10 68.9 62 59.7
CSS0020291 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 2.2e-10 68.6 62 54.8
CSS0041805 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 2.2e-10 68.6 62 54.8
Migut.B01304 Erythranthe guttata HOM05D004166 ORTHO05D004992 2.9e-10 68.2 59 54.2
Ah.13g076280 Amaranthus hybridus HOM05D004166 ORTHO05D004992 4.9e-10 67.4 62 50.0
Actinidia17245 Actinidia chinensis HOM05D004166 ORTHO05D004992 6.4e-10 67.0 67 49.3
AUR62024406 Chenopodium quinoa HOM05D004166 ORTHO05D004992 6.4e-10 67.0 62 50.0
AUR62025999 Chenopodium quinoa HOM05D004166 ORTHO05D004992 6.4e-10 67.0 62 50.0
TPR.G15223 Trifolium pratense HOM05D004166 ORTHO05D004992 2.4e-09 65.1 67 49.3
Medtr7g092170 Medicago truncatula HOM05D004166 ORTHO05D004992 3.2e-09 64.7 62 50.0
Sc14g0005090 Simmondsia chinensis HOM05D004166 ORTHO05D004992 3.2e-09 64.7 57 52.6
unitig_699.g19651 Utricularia gibba HOM05D004166 ORTHO05D004992 3.2e-09 64.7 68 48.5
BcaNung06092 Brassica carinata HOM05D004166 ORTHO05D004992 7.1e-09 63.5 67 49.3
Hma1.2p1_0293F.1_g116190 Hydrangea macrophylla HOM05D004166 ORTHO05D004992 7.1e-09 63.5 51 62.7
AUR62009381 Chenopodium quinoa HOM05D004166 ORTHO05D004992 1.6e-08 62.4 52 59.6
arahy.Tifrunner.gnm1.ann1.H3MDMT Arachis hypogaea HOM05D004166 ORTHO05D004992 2.7e-08 61.6 57 49.1
arahy.Tifrunner.gnm1.ann1.UUFG8W Arachis hypogaea HOM05D004166 ORTHO05D004992 2.7e-08 61.6 57 49.1
AUR62023062 Chenopodium quinoa HOM05D004166 ORTHO05D004992 2.7e-08 61.6 52 59.6
EL10Ac2g04320 Beta vulgaris HOM05D004166 ORTHO05D004992 3.5e-08 61.2 52 57.7
Glyma.03G138700 Glycine max HOM05D004166 ORTHO05D004992 6.0e-08 60.5 62 48.4
Nitab4.5_0000634g0190 Nicotiana tabacum HOM05D004166 ORTHO05D004992 1.0e-07 59.7 41 75.6
Sc13g0001900 Simmondsia chinensis HOM05D004166 ORTHO05D004992 1.0e-07 59.7 62 50.0
AUR62027418 Chenopodium quinoa HOM05D004166 ORTHO05D004992 1.3e-07 59.3 56 55.4
Lalb_Chr20g0110831 Lupinus albus HOM05D004166 ORTHO05D004992 1.3e-07 59.3 62 43.5
Zm00001eb005680 Zea mays HOM05D004166 ORTHO05D004992 2.3e-07 58.5 58 55.2
Zm00001eb256610 Zea mays HOM05D004166 ORTHO05D004992 2.3e-07 58.5 58 56.9
Phvul.001G136000 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 3.0e-07 58.2 62 40.3
SalBow1G3711 Salvia bowleyana HOM05D004166 ORTHO05D004992 3.9e-07 57.8 58 53.4
Zm00001eb402020 Zea mays HOM05D004166 ORTHO05D004992 3.9e-07 57.8 58 55.2
Zm00001eb056460 Zea mays HOM05D004166 ORTHO05D004992 5.1e-07 57.4 58 56.9
Zm00001eb018710 Zea mays HOM05D004166 ORTHO05D004992 6.7e-07 57.0 58 56.9
SGA_v2.0_scaffold453G51858 Striga asiatica HOM05D004166 ORTHO05D004992 8.7e-07 56.6 58 48.3
DCAR_016996 Daucus carota HOM05D004166 ORTHO05D004992 1.1e-06 56.2 61 47.5
Zm00001eb272450 Zea mays HOM05D004166 ORTHO05D004992 1.5e-06 55.8 58 53.4
Os03g0174800 Oryza sativa ssp. japonica HOM05D004166 ORTHO05D004992 1.9e-06 55.5 58 55.2
Lalb_Chr01g0017501 Lupinus albus HOM05D004166 ORTHO05D004992 2.5e-06 55.1 62 41.9
SalBow1G3538 Salvia bowleyana HOM05D004166 ORTHO05D004992 4.3e-06 54.3 55 52.7
Zm00001eb076920 Zea mays HOM05D004166 ORTHO05D004992 9.6e-06 53.1 58 55.2


User provided reference genes

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