Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa010744 Carpinus fangiana HOM05D007026 ORTHO05D008493 5.7e-184 647.5 339 100.0
Haze_03229 Corylus avellana HOM05D007026 ORTHO05D008493 3.0e-153 545.4 321 91.0
QL04p005492 Quercus lobata HOM05D007026 ORTHO05D008493 1.6e-90 337.0 340 60.9
Thecc.01G412700 Theobroma cacao HOM05D007026 ORTHO05D008493 6.0e-77 292.0 265 62.6
Prupe.2G010600 Prunus persica HOM05D007026 ORTHO05D008493 7.9e-77 291.6 342 53.5
TWI09G0295 Tripterygium wilfordii HOM05D007026 ORTHO05D008493 1.7e-71 273.9 356 50.0
Potri.009G063700 Populus trichocarpa HOM05D007026 ORTHO05D008493 3.8e-71 272.7 341 52.8
Hma1.2p1_0293F.1_g116330 Hydrangea macrophylla HOM05D007026 ORTHO05D008493 9.3e-70 268.1 341 53.4
Potri.001G269000 Populus trichocarpa HOM05D007026 ORTHO05D008493 9.3e-70 268.1 352 50.0
Manes.10G145400 Manihot esculenta HOM05D007026 ORTHO05D008493 1.2e-69 267.7 338 52.1
MD07G1007900 Malus domestica HOM05D007026 ORTHO05D008493 2.3e-68 263.5 343 50.7
RcHm_v2.0_Chr1g0315651 Rosa chinensis HOM05D007026 ORTHO05D008493 2.5e-67 260.0 344 50.6
Sabra09G0047000 Salix brachista HOM05D007026 ORTHO05D008493 3.3e-67 259.6 349 50.4
CSS0028033 Camellia sinensis var. sinensis HOM05D007026 ORTHO05D008493 4.3e-67 259.2 298 54.4
Duzib268G1513 Durio zibethinus HOM05D007026 ORTHO05D008493 3.1e-65 253.1 334 50.3
vmacro21182 Vaccinium macrocarpon HOM05D007026 ORTHO05D008493 5.3e-65 252.3 343 50.1
FAN06G1399 Fragaria x ananassa HOM05D007026 ORTHO05D008493 2.0e-64 250.4 334 50.9
FAN03G2284 Fragaria x ananassa HOM05D007026 ORTHO05D008493 3.4e-64 249.6 341 50.1
Rhsim01G0130400 Rhododendron simsii HOM05D007026 ORTHO05D008493 4.5e-64 249.2 175 73.1
Ciclev10032288m.g Citrus clementina HOM05D007026 ORTHO05D008493 5.9e-64 248.8 346 50.0
arahy.Tifrunner.gnm1.ann1.VL74DI Arachis hypogaea HOM05D007026 ORTHO05D008493 7.7e-64 248.4 174 74.1
FAN10G3680 Fragaria x ananassa HOM05D007026 ORTHO05D008493 1.0e-63 248.1 341 50.1
Nn2g15423 Nelumbo nucifera HOM05D007026 ORTHO05D008493 2.9e-63 246.5 310 50.6
Cc02_g27730 Coffea canephora HOM05D007026 ORTHO05D008493 1.4e-62 244.2 182 68.7
TAR623G0027 Trochodendron aralioides HOM05D007026 ORTHO05D008493 2.5e-62 243.4 287 55.1
Atru.chr11.2644 Acer truncatum HOM05D007026 ORTHO05D008493 5.5e-62 242.3 259 56.8
Actinidia21558 Actinidia chinensis HOM05D007026 ORTHO05D008493 5.5e-62 242.3 164 76.2
TAR623G1735 Trochodendron aralioides HOM05D007026 ORTHO05D008493 7.2e-62 241.9 287 54.7
CANSAT80G1756 Cannabis sativa HOM05D007026 ORTHO05D008493 2.7e-61 240.0 175 70.9
PGR044G0728 Punica granatum HOM05D007026 ORTHO05D008493 1.0e-60 238.0 188 68.6
Medtr8g036520 Medicago truncatula HOM05D007026 ORTHO05D008493 5.1e-60 235.7 180 68.3
Lalb_Chr03g0033971 Lupinus albus HOM05D007026 ORTHO05D008493 6.7e-60 235.3 180 68.9
ClCG09G004280 Citrullus lanatus HOM05D007026 ORTHO05D008493 2.8e-58 229.9 340 46.5
Peaxi162Scf00428g00077 Petunia axillaris HOM05D007026 ORTHO05D008493 1.1e-57 228.0 188 65.4
Gohir.D08G166400 Gossypium hirsutum HOM05D007026 ORTHO05D008493 1.4e-57 227.6 184 68.5
Gorai.004G173800 Gossypium raimondii HOM05D007026 ORTHO05D008493 1.4e-57 227.6 184 68.5
MD02G1314200 Malus domestica HOM05D007026 ORTHO05D008493 1.4e-57 227.6 354 46.9
PGSC0003DMG400024551 Solanum tuberosum HOM05D007026 ORTHO05D008493 5.3e-57 225.7 174 66.1
CsaV3_7G031200 Cucumis sativus L. HOM05D007026 ORTHO05D008493 6.9e-57 225.3 176 67.6
Cpa.g.sc245.8 Carica papaya HOM05D007026 ORTHO05D008493 1.2e-56 224.6 350 46.0
Nitab4.5_0002881g0080 Nicotiana tabacum HOM05D007026 ORTHO05D008493 1.5e-56 224.2 173 65.3
MSTRG.28077 Avicennia marina HOM05D007026 ORTHO05D008493 2.0e-56 223.8 179 67.0
Sopen03g034460 Solanum pennellii HOM05D007026 ORTHO05D008493 2.6e-56 223.4 174 64.9
THA.LOC104826673 Tarenaya hassleriana HOM05D007026 ORTHO05D008493 2.6e-56 223.4 201 59.2
Solyc03g115460.3 Solanum lycopersicum HOM05D007026 ORTHO05D008493 1.0e-55 221.5 174 64.4
Psat4g148320 Pisum sativum HOM05D007026 ORTHO05D008493 1.3e-55 221.1 261 50.6
MELO3C023538.2 Cucumis melo HOM05D007026 ORTHO05D008493 1.7e-55 220.7 209 59.8
Sc11g0009270 Simmondsia chinensis HOM05D007026 ORTHO05D008493 1.7e-55 220.7 293 48.1
DCAR_029660 Daucus carota HOM05D007026 ORTHO05D008493 1.9e-54 217.2 158 69.6
SGA_v2.0_scaffold4G02258 Striga asiatica HOM05D007026 ORTHO05D008493 2.5e-54 216.9 206 60.2
Lj3g0000564 Lotus japonicus HOM05D007026 ORTHO05D008493 9.4e-54 214.9 184 63.6
Lsat_1_v5_gn_1_108360 Lactuca sativa HOM05D007026 ORTHO05D008493 1.8e-52 210.7 278 47.5
Dinv09365 Davidia involucrata HOM05D007026 ORTHO05D008493 7.4e-51 205.3 302 47.0
ECA248G3415 Erigeron canadensis HOM05D007026 ORTHO05D008493 7.4e-51 205.3 203 54.7
Lj7P569T60 Lonicera japonica HOM05D007026 ORTHO05D008493 1.7e-50 204.1 172 61.6
unitig_0.g1578 Utricularia gibba HOM05D007026 ORTHO05D008493 4.8e-50 202.6 210 54.8
SHI26926 Sapria himalayana HOM05D007026 ORTHO05D008493 1.8e-49 200.7 241 52.3
Carub.0003s1200 Capsella rubella HOM05D007026 ORTHO05D008493 3.1e-49 199.9 235 51.1
Migut.A00762 Erythranthe guttata HOM05D007026 ORTHO05D008493 3.1e-49 199.9 175 62.3
Dinv43456 Davidia involucrata HOM05D007026 ORTHO05D008493 4.1e-49 199.5 296 46.6
COL.COLO4_23920 Corchorus olitorius HOM05D007026 ORTHO05D008493 1.5e-48 197.6 176 60.2
Migut.N01474 Erythranthe guttata HOM05D007026 ORTHO05D008493 1.5e-48 197.6 213 55.4
CARHR087160 Cardamine hirsuta HOM05D007026 ORTHO05D008493 2.0e-48 197.2 237 51.1
PSO339G4493 Papaver somniferum HOM05D007026 ORTHO05D008493 2.0e-48 197.2 229 49.8
Phvul.011G212500 Phaseolus vulgaris HOM05D007026 ORTHO05D008493 2.0e-48 197.2 194 57.7
FvH4_7g00860 Fragaria vesca HOM05D007026 ORTHO05D008493 2.6e-48 196.8 294 49.0
Glyma.13G204000 Glycine max HOM05D007026 ORTHO05D008493 3.5e-48 196.4 214 56.5
VMungo1127G0427 Vigna mungo HOM05D007026 ORTHO05D008493 3.5e-48 196.4 205 54.1
AL3G24320 Arabidopsis lyrata HOM05D007026 ORTHO05D008493 4.5e-48 196.1 202 56.4
Nitab4.5_0005198g0030 Nicotiana tabacum HOM05D007026 ORTHO05D008493 4.5e-48 196.1 157 67.5
HanXRQChr06g0185391 Helianthus annuus HOM05D007026 ORTHO05D008493 1.0e-47 194.9 216 49.5
Sed0012425 Sechium edule HOM05D007026 ORTHO05D008493 2.9e-47 193.4 158 64.6
AT3G12650 Arabidopsis thaliana HOM05D007026 ORTHO05D008493 8.5e-47 191.8 237 51.1
Aqoxy1G00217 Aquilegia oxysepala HOM05D007026 ORTHO05D008493 1.4e-46 191.0 210 53.3
Actinidia20675 Actinidia chinensis HOM05D007026 ORTHO05D008493 1.9e-46 190.7 133 73.7
MBI01_g27619_MAGBIO Magnolia biondii HOM05D007026 ORTHO05D008493 2.5e-46 190.3 153 66.7
BcaC01g04025 Brassica carinata HOM05D007026 ORTHO05D008493 4.2e-46 189.5 236 50.4
BolC3t16854H Brassica oleracea HOM05D007026 ORTHO05D008493 4.2e-46 189.5 236 50.4
ATR0605G064 Amborella trichopoda HOM05D007026 ORTHO05D008493 5.5e-46 189.1 169 62.1
C03p45790 Brassica napus HOM05D007026 ORTHO05D008493 7.2e-46 188.7 236 50.4
A03p37740 Brassica napus HOM05D007026 ORTHO05D008493 1.6e-45 187.6 236 49.6
BraA03t12929Z Brassica rapa HOM05D007026 ORTHO05D008493 1.6e-45 187.6 236 49.6
Sp3g10790 Schrenkiella parvula HOM05D007026 ORTHO05D008493 2.7e-45 186.8 239 49.8
Thhalv10021417m.g Eutrema salsugineum HOM05D007026 ORTHO05D008493 1.8e-44 184.1 239 48.5
BcaB04g18713 Brassica carinata HOM05D007026 ORTHO05D008493 5.2e-44 182.6 171 57.9
Aa31LG3G20 Aethionema arabicum HOM05D007026 ORTHO05D008493 3.3e-43 179.9 236 47.9
A05p36850 Brassica napus HOM05D007026 ORTHO05D008493 3.7e-42 176.4 172 57.6
BraA05t22486Z Brassica rapa HOM05D007026 ORTHO05D008493 8.2e-42 175.3 172 56.4
BcaB06g25527 Brassica carinata HOM05D007026 ORTHO05D008493 1.4e-41 174.5 199 53.3
RcHm_v2.0_Chr1g0315191 Rosa chinensis HOM05D007026 ORTHO05D008493 2.0e-40 170.6 114 75.4
RcHm_v2.0_Chr1g0315371 Rosa chinensis HOM05D007026 ORTHO05D008493 5.9e-40 169.1 114 74.6
RcHm_v2.0_Chr1g0315521 Rosa chinensis HOM05D007026 ORTHO05D008493 1.7e-39 167.5 114 74.6
HPP92_022795 Vanilla planifolia HOM05D007026 ORTHO05D008493 1.7e-39 167.5 162 55.6
Gohir.A08G145400 Gossypium hirsutum HOM05D007026 ORTHO05D008493 3.8e-39 166.4 150 62.0
RcHm_v2.0_Chr1g0315011 Rosa chinensis HOM05D007026 ORTHO05D008493 7.2e-38 162.2 114 73.7
Eucgr.J01262 Eucalyptus grandis HOM05D007026 ORTHO05D008493 1.8e-36 157.5 117 66.7
PSO384G4663 Papaver somniferum HOM05D007026 ORTHO05D008493 7.5e-35 152.1 185 49.7
BcaC05g29251 Brassica carinata HOM05D007026 ORTHO05D008493 6.3e-34 149.1 124 63.7
EL10Ac2g04312 Beta vulgaris HOM05D007026 ORTHO05D008493 1.8e-33 147.5 160 50.6
BolC5t34196H Brassica oleracea HOM05D007026 ORTHO05D008493 3.5e-32 143.3 116 64.7
Os02g0718000 Oryza sativa ssp. japonica HOM05D007026 ORTHO05D008493 6.8e-28 129.0 155 47.1
Zm00001eb189290 Zea mays HOM05D007026 ORTHO05D008493 8.8e-28 128.6 171 43.3
BcaB08g35591 Brassica carinata HOM05D007026 ORTHO05D008493 1.8e-25 120.9 144 50.7
TPR.G17515 Trifolium pratense HOM05D007026 ORTHO05D008493 1.4e-20 104.8 191 39.3
AUR62009374 Chenopodium quinoa HOM05D007026 ORTHO05D008493 2.3e-20 104.0 120 41.7
Nitab4.5_0004511g0060 Nicotiana tabacum HOM05D007026 ORTHO05D008493 3.4e-19 100.1 68 72.1
AL7G43500 Arabidopsis lyrata HOM05D007026 ORTHO05D008493 2.0e-16 90.9 77 59.7
Pp3c2_10070 Physcomitrium patens HOM05D007026 ORTHO05D008493 2.9e-15 87.0 163 38.0
Nitab4.5_0000052g0150 Nicotiana tabacum HOM05D007026 ORTHO05D008493 1.6e-13 81.3 86 58.1
SMO147G0317 Selaginella moellendorffii HOM05D007026 ORTHO05D008493 1.0e-12 78.6 137 35.0
Aqoxy1G00218 Aquilegia oxysepala HOM05D000196 ORTHO05D000279 1.8e-12 77.8 303 31.7
Mapoly0153s0019 Marchantia polymorpha HOM05D007026 ORTHO05D008493 4.4e-11 73.2 142 37.3
C05p55310 Brassica napus HOM05D007026 ORTHO05D008493 1.3e-10 71.6 51 70.6
TPR.G28471 Trifolium pratense HOM05D007026 ORTHO05D008493 7.0e-09 65.9 94 46.8
AUR62044089 Chenopodium quinoa HOM05D005782 ORTHO05D007436 9.5e-06 55.5 82 37.8


User provided reference genes

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