Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa010722 Carpinus fangiana HOM05D005463 ORTHO05D006900 1.7e-210 735.7 371 100.0
Haze_03251 Corylus avellana HOM05D005463 ORTHO05D006900 3.0e-202 708.4 371 96.2
CiPaw.13G001800 Carya illinoinensis HOM05D005463 ORTHO05D006900 1.1e-175 620.2 372 84.9
Prupe.2G005900 Prunus persica HOM05D005463 ORTHO05D006900 1.0e-170 603.6 370 83.5
RcHm_v2.0_Chr1g0314251 Rosa chinensis HOM05D005463 ORTHO05D006900 2.8e-168 595.5 376 81.4
QL04p003263 Quercus lobata HOM05D005463 ORTHO05D006900 3.6e-168 595.1 375 81.3
RcHm_v2.0_Chr6g0277781 Rosa chinensis HOM05D005463 ORTHO05D006900 9.0e-167 590.5 372 80.9
FAN06G3192 Fragaria x ananassa HOM05D005463 ORTHO05D006900 1.6e-163 579.7 379 78.6
FAN03G0244 Fragaria x ananassa HOM05D005463 ORTHO05D006900 2.3e-162 575.9 373 79.1
CSS0041052 Camellia sinensis var. sinensis HOM05D005463 ORTHO05D006900 1.1e-161 573.5 372 80.6
CSS0012415 Camellia sinensis var. sinensis HOM05D005463 ORTHO05D006900 1.5e-161 573.2 372 80.1
MD07G1002800 Malus domestica HOM05D005463 ORTHO05D006900 1.2e-158 563.5 384 77.6
ClCG09G003850 Citrullus lanatus HOM05D005463 ORTHO05D006900 1.5e-158 563.1 373 79.1
CAN.G1393.12 Capsicum annuum HOM05D005463 ORTHO05D006900 4.5e-158 561.6 368 78.0
TAR623G0821 Trochodendron aralioides HOM05D005463 ORTHO05D006900 5.8e-158 561.2 372 77.2
Dinv43914 Davidia involucrata HOM05D005463 ORTHO05D006900 1.0e-157 560.5 372 78.5
MELO3C023520.2 Cucumis melo HOM05D005463 ORTHO05D006900 1.7e-157 559.7 373 78.0
TAR369G0415 Trochodendron aralioides HOM05D005463 ORTHO05D006900 6.5e-157 557.8 371 76.8
Potri.001G226900 Populus trichocarpa HOM05D005463 ORTHO05D006900 1.4e-156 556.6 378 76.7
Thecc.01G415300 Theobroma cacao HOM05D005463 ORTHO05D006900 3.2e-156 555.4 366 79.8
CsaV3_7G031380 Cucumis sativus L. HOM05D005463 ORTHO05D006900 4.2e-156 555.1 373 77.5
Sabra16G0135300 Salix brachista HOM05D005463 ORTHO05D006900 3.9e-154 548.5 378 75.7
PGSC0003DMG400025254 Solanum tuberosum HOM05D005463 ORTHO05D006900 1.1e-153 547.0 371 76.3
TWI77G0271 Tripterygium wilfordii HOM05D005463 ORTHO05D006900 1.1e-153 547.0 378 76.7
Nitab4.5_0006866g0010 Nicotiana tabacum HOM05D005463 ORTHO05D006900 3.3e-153 545.4 369 77.0
Solyc01g086650.3 Solanum lycopersicum HOM05D005463 ORTHO05D006900 3.3e-153 545.4 369 77.0
Sopen01g033670 Solanum pennellii HOM05D005463 ORTHO05D006900 3.3e-153 545.4 369 77.0
Nitab4.5_0002239g0050 Nicotiana tabacum HOM05D005463 ORTHO05D006900 2.1e-152 542.7 369 76.7
CANSAT11G2548 Cannabis sativa HOM05D005463 ORTHO05D006900 4.8e-152 541.6 387 75.2
Gohir.D10G064800 Gossypium hirsutum HOM05D005463 ORTHO05D006900 3.1e-151 538.9 367 77.7
Manes.10G148700 Manihot esculenta HOM05D005463 ORTHO05D006900 4.1e-151 538.5 388 73.7
Ciclev10031826m.g Citrus clementina HOM05D005463 ORTHO05D006900 6.9e-151 537.7 348 79.3
Lalb_Chr25g0283441 Lupinus albus HOM05D005463 ORTHO05D006900 9.0e-151 537.3 334 81.1
Duzib114G0804 Durio zibethinus HOM05D005463 ORTHO05D006900 1.2e-150 537.0 340 81.5
VMungo1080G0018 Vigna mungo HOM05D005463 ORTHO05D006900 1.0e-149 533.9 373 75.1
DCAR_006305 Daucus carota HOM05D005463 ORTHO05D006900 1.3e-149 533.5 373 75.3
Gorai.011G068800 Gossypium raimondii HOM05D005463 ORTHO05D006900 2.9e-149 532.3 368 76.9
THA.LOC104819056 Tarenaya hassleriana HOM05D005463 ORTHO05D006900 3.8e-149 531.9 384 72.1
Lj3g0018047 Lotus japonicus HOM05D005463 ORTHO05D006900 2.5e-148 529.3 360 75.0
Cc02_g27320 Coffea canephora HOM05D005463 ORTHO05D006900 1.2e-147 526.9 361 76.5
BcaC02g08999 Brassica carinata HOM05D005463 ORTHO05D006900 2.7e-147 525.8 376 74.5
BolC4t26367H Brassica oleracea HOM05D005463 ORTHO05D006900 2.7e-147 525.8 376 74.5
Lsat_1_v5_gn_4_46300 Lactuca sativa HOM05D005463 ORTHO05D006900 3.5e-147 525.4 368 74.7
Migut.B01346 Erythranthe guttata HOM05D005463 ORTHO05D006900 6.1e-147 524.6 374 72.5
Sp7g01080 Schrenkiella parvula HOM05D005463 ORTHO05D006900 6.1e-147 524.6 376 74.7
BcaB06g27564 Brassica carinata HOM05D005463 ORTHO05D006900 7.9e-147 524.2 372 73.9
Ca_22203_v3 Cicer arietinum L. HOM05D005463 ORTHO05D006900 7.9e-147 524.2 372 73.7
Thhalv10027799m.g Eutrema salsugineum HOM05D005463 ORTHO05D006900 7.9e-147 524.2 379 74.1
A04p13900 Brassica napus HOM05D005463 ORTHO05D006900 1.0e-146 523.9 377 73.7
BraA04t17055Z Brassica rapa HOM05D005463 ORTHO05D006900 1.0e-146 523.9 377 73.7
Glyma.08G150800 Glycine max HOM05D005463 ORTHO05D006900 1.0e-146 523.9 336 80.4
AT5G40850 Arabidopsis thaliana HOM05D005463 ORTHO05D006900 1.8e-146 523.1 375 73.9
C04p47660 Brassica napus HOM05D005463 ORTHO05D006900 1.8e-146 523.1 376 73.9
vmacro13633 Vaccinium macrocarpon HOM05D005463 ORTHO05D006900 3.0e-146 522.3 380 76.3
AL7G48760 Arabidopsis lyrata HOM05D005463 ORTHO05D006900 3.9e-146 521.9 375 74.9
BcaB02g07924 Brassica carinata HOM05D005463 ORTHO05D006900 6.7e-146 521.2 375 73.9
Glyma.15G270200 Glycine max HOM05D005463 ORTHO05D006900 1.1e-145 520.4 335 79.1
Nn7g36051 Nelumbo nucifera HOM05D005463 ORTHO05D006900 1.1e-145 520.4 335 79.7
Phvul.005G038200 Phaseolus vulgaris HOM05D005463 ORTHO05D006900 2.5e-145 519.2 375 73.1
Psat5g207280 Pisum sativum HOM05D005463 ORTHO05D006900 2.5e-145 519.2 374 72.5
Carub.0007s3465 Capsella rubella HOM05D005463 ORTHO05D006900 3.3e-145 518.8 376 73.9
MBI19_g42082_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 3.3e-145 518.8 387 72.9
PSO541G2837 Papaver somniferum HOM05D005463 ORTHO05D006900 5.7e-145 518.1 364 75.5
Rhsim07G0052500 Rhododendron simsii HOM05D005463 ORTHO05D006900 5.7e-145 518.1 402 73.1
Eucgr.H00541 Eucalyptus grandis HOM05D005463 ORTHO05D006900 7.4e-145 517.7 367 74.7
MBI07_g21780_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 7.4e-145 517.7 387 73.4
FvH4_7g00480 Fragaria vesca HOM05D005463 ORTHO05D006900 9.7e-145 517.3 332 79.2
Sed0008391 Sechium edule HOM05D005463 ORTHO05D006900 1.3e-144 516.9 372 75.8
Medtr7g034345 Medicago truncatula HOM05D005463 ORTHO05D006900 1.6e-144 516.5 345 76.8
Aa31sc48G90 Aethionema arabicum HOM05D005463 ORTHO05D006900 2.8e-144 515.8 377 71.9
PGR083G1038 Punica granatum HOM05D005463 ORTHO05D006900 3.7e-144 515.4 335 80.0
FAN10G2111 Fragaria x ananassa HOM05D005463 ORTHO05D006900 8.2e-144 514.2 332 78.9
Peaxi162Scf00058g00512 Petunia axillaris HOM05D005463 ORTHO05D006900 1.1e-143 513.8 369 73.2
TPR.G12169 Trifolium pratense HOM05D005463 ORTHO05D006900 1.4e-143 513.5 370 73.0
Lj7A567T29 Lonicera japonica HOM05D005463 ORTHO05D006900 1.8e-143 513.1 379 72.8
Actinidia32326 Actinidia chinensis HOM05D005463 ORTHO05D006900 1.2e-142 510.4 346 76.9
Oeu047540.1 Olea europaea HOM05D005463 ORTHO05D006900 1.5e-142 510.0 379 71.0
SGA_v2.0_scaffold4G02241 Striga asiatica HOM05D005463 ORTHO05D006900 1.5e-142 510.0 370 73.0
Duzib138G0896 Durio zibethinus HOM05D005463 ORTHO05D006900 2.0e-142 509.6 368 75.0
COL.COLO4_23908 Corchorus olitorius HOM05D000259 ORTHO05D000155 5.1e-138 495.0 332 75.9
CARHR213670 Cardamine hirsuta HOM05D005463 ORTHO05D006900 8.8e-138 494.2 383 70.8
Aqoxy2G00060 Aquilegia oxysepala HOM05D005463 ORTHO05D006900 2.0e-137 493.0 384 71.6
Sc20g0006350 Simmondsia chinensis HOM05D005463 ORTHO05D006900 2.8e-136 489.2 374 71.1
SGA_v2.0_scaffold95G28785 Striga asiatica HOM05D005463 ORTHO05D006900 4.8e-136 488.4 399 67.4
TWI74G0716 Tripterygium wilfordii HOM05D005463 ORTHO05D006900 3.4e-134 482.3 327 76.8
EL10Ac1g02324 Beta vulgaris HOM05D005463 ORTHO05D006900 1.0e-133 480.7 392 66.8
MBI19_g47932_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 1.3e-133 480.3 371 70.6
AUR62034961 Chenopodium quinoa HOM05D005463 ORTHO05D006900 1.7e-133 479.9 384 67.2
Ah.05g166840 Amaranthus hybridus HOM05D005463 ORTHO05D006900 6.5e-133 478.0 391 66.5
CDE09G0814 Ceratophyllum demersum HOM05D005463 ORTHO05D006900 8.5e-133 477.6 330 74.5
HanXRQChr16g0520501 Helianthus annuus HOM05D005463 ORTHO05D006900 2.5e-132 476.1 369 69.1
GSVIVG01032030001 Vitis vinifera HOM05D005463 ORTHO05D006900 2.3e-130 469.5 279 86.0
ATR0709G016 Amborella trichopoda HOM05D005463 ORTHO05D006900 3.0e-130 469.2 332 72.3
Manes.07G002600 Manihot esculenta HOM05D005463 ORTHO05D006900 3.0e-130 469.2 325 74.8
Hund11459 Selenicereus undatus HOM05D005463 ORTHO05D006900 3.7e-128 462.2 391 65.7
SalBow4G1191 Salvia bowleyana HOM05D005463 ORTHO05D006900 4.1e-127 458.8 323 72.4
AUR62035771 Chenopodium quinoa HOM05D005463 ORTHO05D006900 9.1e-127 457.6 360 67.8
ECA234G3252 Erigeron canadensis HOM05D005463 ORTHO05D006900 1.2e-126 457.2 369 67.5
arahy.Tifrunner.gnm1.ann1.35ND81 Arachis hypogaea HOM05D005463 ORTHO05D006900 1.3e-125 453.8 326 73.9
Zm00001eb159150 Zea mays HOM05D005463 ORTHO05D006900 2.2e-120 436.4 331 70.4
Cpa.g.sc1133.2 Carica papaya HOM05D005463 ORTHO05D006900 1.3e-117 427.2 380 63.9
Zm00001eb358930 Zea mays HOM05D005463 ORTHO05D006900 2.6e-113 412.9 336 66.4
HPP92_020287 Vanilla planifolia HOM05D005463 ORTHO05D006900 2.2e-112 409.8 287 73.9
Mapoly0087s0054 Marchantia polymorpha HOM05D005463 ORTHO05D006900 2.7e-110 402.9 276 73.6
Medtr3g026780 Medicago truncatula HOM05D005463 ORTHO05D006900 5.9e-110 401.7 233 85.8
Pp3c10_8730 Physcomitrium patens HOM05D005463 ORTHO05D006900 1.2e-107 394.0 278 70.9
SMO174G0240 Selaginella moellendorffii HOM05D005463 ORTHO05D006900 1.4e-106 390.6 326 63.5
CBR_g4488 Chara braunii HOM05D005463 ORTHO05D006900 1.6e-102 377.1 280 67.5
unitig_61.g26444 Utricularia gibba HOM05D005463 ORTHO05D006900 8.9e-98 361.3 278 69.8
ATR1100G030 Amborella trichopoda HOM05D005463 ORTHO05D006900 1.1e-95 354.4 292 63.7
Os01g0631200 Oryza sativa ssp. japonica HOM05D005463 ORTHO05D006900 5.4e-87 325.5 205 80.5
Cre09.g396401 Chlamydomonas reinhardtii HOM05D005463 ORTHO05D006900 1.6e-83 313.9 298 56.7
PRCOL_00005728 Prasinoderma coloniale HOM05D005463 ORTHO05D006900 1.4e-82 310.8 248 61.3
TPR.G33976 Trifolium pratense HOM05D005463 ORTHO05D006900 1.4e-82 310.8 279 60.6
Gohir.A10G063300 Gossypium hirsutum HOM05D005463 ORTHO05D006900 1.2e-81 307.8 243 69.1
Dinv43913 Davidia involucrata HOM05D005463 ORTHO05D006900 1.2e-78 297.7 206 75.7
MBI10_g23170_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 3.5e-78 296.2 238 67.2
MCO12G109 Micromonas commoda HOM05D005463 ORTHO05D006900 1.1e-76 291.2 254 56.7
SEGI_24059 Sequoiadendron giganteum HOM05D005463 ORTHO05D006900 1.6e-67 260.8 184 71.7
RcHm_v2.0_Chr4g0408791 Rosa chinensis HOM05D005463 ORTHO05D006900 2.8e-59 233.4 156 79.5
Hma1.2p1_1089F.1_g255720 Hydrangea macrophylla HOM05D005463 ORTHO05D006900 1.5e-57 227.6 188 66.0
MSTRG.17019 Avicennia marina HOM05D005463 ORTHO05D006900 8.4e-56 221.9 180 64.4
MSTRG.17060 Avicennia marina HOM05D005463 ORTHO05D006900 4.2e-55 219.5 180 64.4
Oeu010361.1 Olea europaea HOM05D005463 ORTHO05D006900 4.2e-55 219.5 187 62.6
AagrBONN_evm.TU.Sc2ySwM_344.3224 Anthoceros agrestis HOM05D005463 ORTHO05D006900 2.5e-52 210.3 146 70.5
Prupe.I005100 Prunus persica HOM05D005463 ORTHO05D006900 3.6e-51 206.5 118 86.4
arahy.Tifrunner.gnm1.ann1.UWT5DF Arachis hypogaea HOM05D005463 ORTHO05D006900 1.6e-46 191.0 109 86.2
RcHm_v2.0_Chr6g0260851 Rosa chinensis HOM05D005463 ORTHO05D006900 4.6e-46 189.5 137 73.7
SEGI_02284 Sequoiadendron giganteum HOM05D005463 ORTHO05D006900 1.0e-32 145.2 109 67.9
RcHm_v2.0_Chr4g0408811 Rosa chinensis HOM05D005463 ORTHO05D006900 7.9e-30 135.6 111 66.7
Cre12.g538650 Chlamydomonas reinhardtii HOM05D005463 ORTHO05D044100 2.3e-29 134.0 256 32.0
Cfa024173 Carpinus fangiana HOM05D005463 ORTHO05D006900 6.7e-29 132.5 245 34.3
Nn3g19661 Nelumbo nucifera HOM05D005463 ORTHO05D006900 7.7e-25 119.0 191 45.5
ATR0709G040 Amborella trichopoda HOM05D005463 ORTHO05D006900 8.5e-24 115.5 158 46.2
CAN.G762.7 Capsicum annuum HOM05D005463 ORTHO05D006900 2.1e-22 110.9 76 76.3
Haze_27481 Corylus avellana HOM05D005463 ORTHO05D006900 2.7e-22 110.5 167 39.5
MCO11G851 Micromonas commoda HOM05D005463 ORTHO05D044100 5.1e-21 106.3 241 30.3
RcHm_v2.0_Chr1g0375041 Rosa chinensis HOM05D005463 ORTHO05D006900 8.2e-19 99.0 50 96.0
MBI14_g30707_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 4.1e-18 96.7 66 72.7
CAN.G244.9 Capsicum annuum HOM05D005463 ORTHO05D006900 9.1e-18 95.5 83 56.6


User provided reference genes

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