Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa010699 Carpinus fangiana HOM05D008109 ORTHO05D009894 5.6e-66 254.2 136 100.0
Haze_03277 Corylus avellana HOM05D008109 ORTHO05D009894 9.6e-58 226.9 136 89.7
CiPaw.13G000700 Carya illinoinensis HOM05D008109 ORTHO05D009894 2.3e-35 152.5 148 65.5
QL04p002011 Quercus lobata HOM05D008109 ORTHO05D009894 5.0e-22 108.2 152 55.9
Dinv43946 Davidia involucrata HOM05D008109 ORTHO05D009894 3.2e-21 105.5 144 50.0
Duzib192G0509 Durio zibethinus HOM05D008109 ORTHO05D009894 7.2e-21 104.4 153 52.3
Cc02_g26790 Coffea canephora HOM05D008109 ORTHO05D009894 1.8e-19 99.8 147 49.0
Nn7g35907 Nelumbo nucifera HOM05D008109 ORTHO05D009894 6.7e-19 97.8 170 45.9
Cc02_g26780 Coffea canephora HOM05D008109 ORTHO05D009894 5.7e-18 94.7 138 50.7
Gorai.010G246800 Gossypium raimondii HOM05D008109 ORTHO05D009894 5.7e-18 94.7 163 49.1
Gohir.D06G219700 Gossypium hirsutum HOM05D008109 ORTHO05D009894 9.7e-18 94.0 166 48.8
ClCG09G003640 Citrullus lanatus HOM05D008109 ORTHO05D009894 1.3e-17 93.6 148 45.3
Gohir.A06G202200 Gossypium hirsutum HOM05D008109 ORTHO05D009894 4.8e-17 91.7 166 48.2
TPR.G10815 Trifolium pratense HOM05D008109 ORTHO05D009894 2.4e-16 89.4 148 44.6
MELO3C023500.2 Cucumis melo HOM05D008109 ORTHO05D009894 4.1e-16 88.6 148 43.9
Gohir.A05G110700 Gossypium hirsutum HOM05D008109 ORTHO05D009894 4.1e-16 88.6 143 44.1
Hma1.2p1_0541F.1_g174770 Hydrangea macrophylla HOM05D008109 ORTHO05D009894 6.9e-16 87.8 155 47.1
Medtr2g062280 Medicago truncatula HOM05D008109 ORTHO05D009894 9.1e-16 87.4 150 40.7
Thecc.06G002700 Theobroma cacao HOM05D008109 ORTHO05D009894 9.1e-16 87.4 162 44.4
TWI09G0246 Tripterygium wilfordii HOM05D008109 ORTHO05D009894 1.5e-15 86.7 141 51.1
Duzib235G0400 Durio zibethinus HOM05D008109 ORTHO05D009894 2.6e-15 85.9 156 46.8
vmacro22469 Vaccinium macrocarpon HOM05D008109 ORTHO05D009894 2.6e-15 85.9 140 50.0
Phvul.005G042700 Phaseolus vulgaris HOM05D008109 ORTHO05D009894 7.7e-15 84.3 151 43.0
VMungo1080G1374 Vigna mungo HOM05D008109 ORTHO05D009894 1.7e-14 83.2 153 42.5
CsaV3_7G031540 Cucumis sativus L. HOM05D008109 ORTHO05D009894 2.9e-14 82.4 150 43.3
Prupe.2G001600 Prunus persica HOM05D008109 ORTHO05D009894 3.8e-14 82.0 153 43.1
Gohir.D05G111100 Gossypium hirsutum HOM05D008109 ORTHO05D009894 1.1e-13 80.5 143 43.4
Nn2g15812 Nelumbo nucifera HOM05D008109 ORTHO05D009894 1.1e-13 80.5 184 38.6
Nitab4.5_0004375g0040 Nicotiana tabacum HOM05D008109 ORTHO05D009894 1.1e-13 80.5 140 47.9
Atru.chr11.2715 Acer truncatum HOM05D008109 ORTHO05D009894 1.4e-13 80.1 177 40.7
Potri.001G232200 Populus trichocarpa HOM05D008109 ORTHO05D009894 1.4e-13 80.1 182 40.7
Sabra16G0138900 Salix brachista HOM05D008109 ORTHO05D009894 1.4e-13 80.1 182 40.7
Ciclev10032944m.g Citrus clementina HOM05D008109 ORTHO05D009894 4.2e-13 78.6 155 43.2
Gorai.009G115400 Gossypium raimondii HOM05D008109 ORTHO05D009894 4.2e-13 78.6 143 42.7
Sed0011083 Sechium edule HOM05D008109 ORTHO05D009894 7.2e-13 77.8 150 44.7
PGSC0003DMG400015658 Solanum tuberosum HOM05D008109 ORTHO05D009894 7.2e-13 77.8 134 46.3
Nitab4.5_0000266g0110 Nicotiana tabacum HOM05D008109 ORTHO05D009894 9.4e-13 77.4 121 47.1
Lsat_1_v5_gn_1_89920 Lactuca sativa HOM05D008109 ORTHO05D009894 1.2e-12 77.0 146 39.0
Lj3g0014063 Lotus japonicus HOM05D008109 ORTHO05D009894 3.6e-12 75.5 169 41.4
Potri.009G024700 Populus trichocarpa HOM05D008109 ORTHO05D009894 3.6e-12 75.5 180 39.4
Aqoxy1G00435 Aquilegia oxysepala HOM05D008109 ORTHO05D009894 1.4e-11 73.6 174 37.4
MSTRG.28106 Avicennia marina HOM05D008109 ORTHO05D009894 1.4e-11 73.6 129 41.1
Lalb_Chr25g0283751 Lupinus albus HOM05D008109 ORTHO05D009894 3.0e-11 72.4 146 40.4
Peaxi162Scf01343g00014 Petunia axillaris HOM05D008109 ORTHO05D009894 3.0e-11 72.4 75 58.7
PGR031G1804 Punica granatum HOM05D008109 ORTHO05D009894 3.0e-11 72.4 160 41.2
Sed0022406 Sechium edule HOM05D008109 ORTHO05D009894 3.0e-11 72.4 149 40.3
Eucgr.I02808 Eucalyptus grandis HOM05D008109 ORTHO05D009894 5.1e-11 71.6 156 44.9
TAR623G1474 Trochodendron aralioides HOM05D008109 ORTHO05D009894 6.7e-11 71.2 87 55.2
DCAR_029584 Daucus carota HOM05D008109 ORTHO05D009894 8.8e-11 70.9 144 38.9
Glyma.08G158700 Glycine max HOM05D008109 ORTHO05D009894 8.8e-11 70.9 187 35.8
CAN.G103.18 Capsicum annuum HOM05D008109 ORTHO05D009894 2.0e-10 69.7 119 45.4
Solyc06g051220.1 Solanum lycopersicum HOM05D008109 ORTHO05D009894 2.6e-10 69.3 141 45.4
AUR62012433 Chenopodium quinoa HOM05D008109 ORTHO05D009894 7.4e-10 67.8 155 38.7
Dinv43505 Davidia involucrata HOM05D008109 ORTHO05D009894 1.3e-09 67.0 117 46.2
AUR62031557 Chenopodium quinoa HOM05D008109 ORTHO05D009894 2.2e-09 66.2 155 38.7
THA.LOC104815879 Tarenaya hassleriana HOM05D011216 ORTHO05D009894 2.8e-09 65.9 167 34.7
Glyma.15G267600 Glycine max HOM05D008109 ORTHO05D009894 3.1e-08 62.4 147 38.1
MBI01_g20511_MAGBIO Magnolia biondii HOM05D011216 ORTHO05D009894 3.1e-08 62.4 142 38.7
Carub.0004s1323 Capsella rubella HOM05D011216 ORTHO05D009894 4.1e-08 62.0 154 37.0
Rhsim07G0049100 Rhododendron simsii HOM05D008109 ORTHO05D009894 3.4e-07 58.9 105 48.6
Manes.10G153100 Manihot esculenta HOM05D011216 ORTHO05D009894 4.5e-07 58.5 160 37.5
Aqoxy2G00464 Aquilegia oxysepala HOM05D008109 ORTHO05D009894 7.7e-07 57.8 125 36.8
Nitab4.5_0003123g0020 Nicotiana tabacum HOM05D008109 ORTHO05D009894 7.7e-07 57.8 98 43.9
Ah.16g104750 Amaranthus hybridus HOM05D008109 ORTHO05D009894 1.0e-06 57.4 141 36.9
AL4G27230 Arabidopsis lyrata HOM05D011216 ORTHO05D009894 1.0e-06 57.4 150 36.7
AL80U10010 Arabidopsis lyrata HOM05D011216 ORTHO05D009894 1.0e-06 57.4 150 36.7
Oeu032778.1 Olea europaea HOM05D008109 ORTHO05D009894 1.0e-06 57.4 139 37.4
C04p17830 Brassica napus HOM05D011216 ORTHO05D009894 1.3e-06 57.0 134 36.6
BolC4t23331H Brassica oleracea HOM05D011216 ORTHO05D009894 1.3e-06 57.0 134 36.6
AT2G31930 Arabidopsis thaliana HOM05D011216 ORTHO05D009894 5.0e-06 55.1 151 38.4
Sp4g14290 Schrenkiella parvula HOM05D011216 ORTHO05D009894 5.0e-06 55.1 147 37.4
Thhalv10017383m.g Eutrema salsugineum HOM05D011216 ORTHO05D009894 6.5e-06 54.7 150 36.0
ECA248G0816 Erigeron canadensis HOM05D008109 ORTHO05D009894 8.5e-06 54.3 131 37.4
Nitab4.5_0000050g0160 Nicotiana tabacum HOM05D008109 ORTHO05D009894 8.5e-06 54.3 93 44.1


User provided reference genes

Program Settings