Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa010688 Carpinus fangiana HOM05D007302 ORTHO05D009191 9.5e-63 243.4 131 100.0
Haze_03286 Corylus avellana HOM05D007302 ORTHO05D009191 3.2e-58 228.4 131 93.9
QL04p001433 Quercus lobata HOM05D007302 ORTHO05D009191 2.2e-51 205.7 130 86.2
TWI09G1618 Tripterygium wilfordii HOM05D007302 ORTHO05D009191 2.1e-49 199.1 130 83.1
Manes.10G151800 Manihot esculenta HOM05D007302 ORTHO05D009191 4.6e-49 198.0 132 84.8
TAR369G0850 Trochodendron aralioides HOM05D007302 ORTHO05D009191 6.6e-48 194.1 131 78.6
TAR369G0332 Trochodendron aralioides HOM05D007302 ORTHO05D009191 1.1e-47 193.4 131 78.6
Prupe.2G003100 Prunus persica HOM05D007302 ORTHO05D009191 2.5e-47 192.2 131 79.4
QL04p001298 Quercus lobata HOM05D007302 ORTHO05D009191 2.5e-47 192.2 154 72.7
MD07G1001600 Malus domestica HOM05D007302 ORTHO05D009191 7.3e-47 190.7 131 78.6
GSVIVG01001360001 Vitis vinifera HOM05D007302 ORTHO05D009191 2.1e-46 189.1 120 83.3
Ciclev10033063m.g Citrus clementina HOM05D007302 ORTHO05D009191 2.8e-46 188.7 128 79.7
Sed0011752 Sechium edule HOM05D007302 ORTHO05D009191 2.8e-46 188.7 131 78.6
MBI08_g23101_MAGBIO Magnolia biondii HOM05D007302 ORTHO05D009191 4.7e-46 188.0 127 79.5
CsaV3_7G031460 Cucumis sativus L. HOM05D007302 ORTHO05D009191 8.1e-46 187.2 131 78.6
Potri.001G230100 Populus trichocarpa HOM05D007302 ORTHO05D009191 1.1e-45 186.8 127 78.7
FAN03G0504 Fragaria x ananassa HOM05D007302 ORTHO05D009191 1.8e-45 186.0 128 78.9
Glyma.15G268700 Glycine max HOM05D007302 ORTHO05D009191 3.1e-45 185.3 131 77.1
AT2G44360 Arabidopsis thaliana HOM05D007302 ORTHO05D009191 5.2e-45 184.5 129 79.8
Ca_02882_v3 Cicer arietinum L. HOM05D007302 ORTHO05D009191 5.2e-45 184.5 131 76.3
Medtr2g061420 Medicago truncatula HOM05D007302 ORTHO05D009191 8.9e-45 183.7 131 77.1
Cpa.g.sc189.6 Carica papaya HOM05D007302 ORTHO05D009191 1.2e-44 183.3 131 75.6
Psat1g127480 Pisum sativum HOM05D007302 ORTHO05D009191 1.2e-44 183.3 131 77.9
CANSAT11G0176 Cannabis sativa HOM05D007302 ORTHO05D009191 2.0e-44 182.6 123 80.5
TPR.G16161 Trifolium pratense HOM05D007302 ORTHO05D009191 2.0e-44 182.6 132 77.3
vmacro13612 Vaccinium macrocarpon HOM05D007302 ORTHO05D009191 2.6e-44 182.2 138 74.6
VMungo1080G0568 Vigna mungo HOM05D007302 ORTHO05D009191 3.4e-44 181.8 131 74.0
Atru.chr11.2701 Acer truncatum HOM05D007302 ORTHO05D009191 5.8e-44 181.0 131 77.1
Thhalv10001676m.g Eutrema salsugineum HOM05D007302 ORTHO05D009191 5.8e-44 181.0 121 81.0
Nn2g15684 Nelumbo nucifera HOM05D007302 ORTHO05D009191 9.9e-44 180.3 119 79.8
ClCG09G003750 Citrullus lanatus HOM05D007302 ORTHO05D009191 1.3e-43 179.9 132 76.5
Lalb_Chr25g0283591 Lupinus albus HOM05D007302 ORTHO05D009191 2.2e-43 179.1 131 75.6
CARHR139520 Cardamine hirsuta HOM05D007302 ORTHO05D009191 2.9e-43 178.7 117 82.1
THA.LOC104817151 Tarenaya hassleriana HOM05D007302 ORTHO05D009191 2.9e-43 178.7 120 80.0
Lj6g0025867 Lotus japonicus HOM05D007302 ORTHO05D009191 3.8e-43 178.3 131 74.0
Sp4g26420 Schrenkiella parvula HOM05D007302 ORTHO05D009191 6.4e-43 177.6 117 82.1
RcHm_v2.0_Chr1g0313291 Rosa chinensis HOM05D007302 ORTHO05D009191 8.4e-43 177.2 115 83.5
Carub.0004s2694 Capsella rubella HOM05D007302 ORTHO05D009191 1.1e-42 176.8 117 81.2
Lj3g0023486 Lotus japonicus HOM05D007302 ORTHO05D009191 1.1e-42 176.8 131 73.3
Actinidia05847 Actinidia chinensis HOM05D007302 ORTHO05D009191 1.9e-42 176.0 139 72.7
Aa31LG1G25940 Aethionema arabicum HOM05D007302 ORTHO05D009191 3.2e-42 175.3 114 83.3
BcaB06g29370 Brassica carinata HOM05D007302 ORTHO05D009191 3.2e-42 175.3 116 81.9
C04p70980 Brassica napus HOM05D007302 ORTHO05D009191 3.2e-42 175.3 116 81.9
BolC4t28601H Brassica oleracea HOM05D007302 ORTHO05D009191 3.2e-42 175.3 116 81.9
A04p33280 Brassica napus HOM05D007302 ORTHO05D009191 7.1e-42 174.1 116 81.0
BraA04t18789Z Brassica rapa HOM05D007302 ORTHO05D009191 7.1e-42 174.1 116 81.0
Phvul.005G041100 Phaseolus vulgaris HOM05D007302 ORTHO05D009191 7.1e-42 174.1 115 80.0
arahy.Tifrunner.gnm1.ann1.5U19IL Arachis hypogaea HOM05D007302 ORTHO05D009191 9.3e-42 173.7 120 78.3
arahy.Tifrunner.gnm1.ann1.Z7X15P Arachis hypogaea HOM05D007302 ORTHO05D009191 9.3e-42 173.7 120 78.3
PSO384G4593 Papaver somniferum HOM05D007302 ORTHO05D009191 9.3e-42 173.7 131 71.8
FvH4_7g00100 Fragaria vesca HOM05D007302 ORTHO05D009191 1.6e-41 172.9 109 86.2
AL4G43340 Arabidopsis lyrata HOM05D007302 ORTHO05D009191 2.7e-41 172.2 127 74.8
Duzib268G0295 Durio zibethinus HOM05D007302 ORTHO05D009191 2.7e-41 172.2 131 77.1
Eucgr.G03411 Eucalyptus grandis HOM05D007302 ORTHO05D009191 3.5e-41 171.8 117 77.8
CiPaw.16G067000 Carya illinoinensis HOM05D007302 ORTHO05D009191 6.0e-41 171.0 111 83.8
DCAR_015712 Daucus carota HOM05D007302 ORTHO05D009191 6.0e-41 171.0 131 74.8
PSO339G0269 Papaver somniferum HOM05D007302 ORTHO05D009191 6.0e-41 171.0 131 71.0
MELO3C023508.2 Cucumis melo HOM05D007302 ORTHO05D009191 7.8e-41 170.6 147 66.7
Thecc.01G416400 Theobroma cacao HOM05D007302 ORTHO05D009191 1.0e-40 170.2 120 80.8
Actinidia31711 Actinidia chinensis HOM05D007302 ORTHO05D009191 1.3e-40 169.9 143 67.8
MSTRG.28098 Avicennia marina HOM05D007302 ORTHO05D009191 1.7e-40 169.5 121 74.4
Lsat_1_v5_gn_1_87261 Lactuca sativa HOM05D007302 ORTHO05D009191 1.7e-40 169.5 136 73.5
Rhsim07G0050000 Rhododendron simsii HOM05D007302 ORTHO05D009191 2.3e-40 169.1 137 70.1
FAN06G3306 Fragaria x ananassa HOM05D007302 ORTHO05D009191 3.0e-40 168.7 115 79.1
PGSC0003DMG400028766 Solanum tuberosum HOM05D007302 ORTHO05D009191 3.0e-40 168.7 125 74.4
Gohir.D08G037201 Gossypium hirsutum HOM05D007302 ORTHO05D009191 5.1e-40 167.9 120 80.0
Gorai.004G035200 Gossypium raimondii HOM05D007302 ORTHO05D009191 5.1e-40 167.9 120 80.0
Sopen10g014540 Solanum pennellii HOM05D007302 ORTHO05D009191 6.6e-40 167.5 124 74.2
Cc02_g26960 Coffea canephora HOM05D007302 ORTHO05D009191 1.1e-39 166.8 125 76.0
FAN10G3108 Fragaria x ananassa HOM05D007302 ORTHO05D009191 1.5e-39 166.4 115 78.3
Migut.N01659 Erythranthe guttata HOM05D007302 ORTHO05D009191 1.9e-39 166.0 134 67.2
Migut.O00474 Erythranthe guttata HOM05D007302 ORTHO05D009191 1.9e-39 166.0 134 67.2
SalBow4G1665 Salvia bowleyana HOM05D007302 ORTHO05D009191 9.6e-39 163.7 136 68.4
SalBow4G2255 Salvia bowleyana HOM05D007302 ORTHO05D009191 9.6e-39 163.7 136 68.4
Solyc10g045350.2 Solanum lycopersicum HOM05D007302 ORTHO05D009191 1.6e-38 162.9 124 73.4
Gohir.A08G026680 Gossypium hirsutum HOM05D007302 ORTHO05D009191 2.1e-38 162.5 120 77.5
Peaxi162Scf00245g01315 Petunia axillaris HOM05D007302 ORTHO05D009191 2.8e-38 162.2 124 72.6
Aqoxy1G00038 Aquilegia oxysepala HOM05D003342 ORTHO05D003861 3.6e-38 161.8 129 69.0
CSS0001542 Camellia sinensis var. sinensis HOM05D007302 ORTHO05D009191 4.8e-38 161.4 112 80.4
CSS0004707 Camellia sinensis var. sinensis HOM05D007302 ORTHO05D009191 8.1e-38 160.6 112 80.4
Sabra16G0137900 Salix brachista HOM05D007302 ORTHO05D009191 5.3e-37 157.9 179 55.9
ECA248G3756 Erigeron canadensis HOM05D007302 ORTHO05D009191 9.0e-37 157.1 126 71.4
Nn7g36009 Nelumbo nucifera HOM05D007302 ORTHO05D009191 9.0e-37 157.1 119 72.3
Sc11g0006270 Simmondsia chinensis HOM05D007302 ORTHO05D009191 9.0e-37 157.1 120 70.8
Actinidia25680 Actinidia chinensis HOM05D007302 ORTHO05D009191 9.9e-36 153.7 113 72.6
unitig_736.g22290 Utricularia gibba HOM05D007302 ORTHO05D009191 2.9e-35 152.1 108 74.1
HanXRQChr15g0480631 Helianthus annuus HOM05D007302 ORTHO05D009191 6.4e-35 151.0 115 73.0
Hund06578 Selenicereus undatus HOM05D007302 ORTHO05D009191 1.4e-34 149.8 127 65.4
CDE07G1496 Ceratophyllum demersum HOM05D007302 ORTHO05D009191 2.1e-33 146.0 123 60.2
Dinv43937 Davidia involucrata HOM05D007302 ORTHO05D009191 1.5e-31 139.8 134 64.2
SGA_v2.0_scaffold95G28773 Striga asiatica HOM05D007302 ORTHO05D009191 1.9e-31 139.4 136 61.8
ATR0807G228 Amborella trichopoda HOM05D007302 ORTHO05D009191 4.8e-30 134.8 97 74.2
CSS0017005 Camellia sinensis var. sinensis HOM05D007302 ORTHO05D009191 6.2e-30 134.4 114 67.5
COL.COLO4_25061 Corchorus olitorius HOM05D007302 ORTHO05D009191 3.1e-29 132.1 121 70.2
EL10Ac9g21938 Beta vulgaris HOM05D007302 ORTHO05D009191 1.2e-28 130.2 126 60.3
AUR62016377 Chenopodium quinoa HOM05D007302 ORTHO05D009191 4.9e-27 124.8 109 64.2
SEGI_27997 Sequoiadendron giganteum HOM05D007302 ORTHO05D009191 4.9e-27 124.8 123 56.9
AUR62011558 Chenopodium quinoa HOM05D007302 ORTHO05D009191 6.4e-27 124.4 113 61.9
HPP92_022445 Vanilla planifolia HOM05D007302 ORTHO05D009191 2.4e-26 122.5 88 76.1
CSS0014571 Camellia sinensis var. sinensis HOM05D007302 ORTHO05D009191 1.8e-24 116.3 111 61.3
Oeu003126.2 Olea europaea HOM05D007302 ORTHO05D009191 6.9e-21 104.4 74 73.0
DCAR_024994 Daucus carota HOM05D007302 ORTHO05D009191 2.1e-17 92.8 95 58.9
Pp3c17_19080 Physcomitrium patens HOM05D007302 ORTHO05D009191 6.0e-17 91.3 104 47.1
CBR_g22319 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-15 87.0 102 44.1
Os09g0553800 Oryza sativa ssp. japonica HOM05D007302 ORTHO05D009191 9.6e-15 84.0 66 65.2
Mapoly0007s0266 Marchantia polymorpha HOM05D007302 ORTHO05D009191 1.6e-14 83.2 109 45.0
MD05G1005700 Malus domestica HOM05D007302 ORTHO05D009191 9.0e-13 77.4 51 80.4
MD15G1336100 Malus domestica HOM05D007302 ORTHO05D009191 3.5e-09 65.5 55 60.0
BcaB01g03316 Brassica carinata HOM05D007302 ORTHO05D009191 1.3e-06 57.0 51 60.8


User provided reference genes

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