Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa010679 Carpinus fangiana HOM05D005425 ORTHO05D006686 4.5e-106 388.3 249 100.0
Haze_03605 Corylus avellana HOM05D006517 ORTHO05D007886 1.7e-92 343.2 244 90.2
Haze_26083 Corylus avellana HOM05D005425 ORTHO05D006686 2.0e-90 336.3 247 85.8
CiPaw.03G198700 Carya illinoinensis HOM05D005425 ORTHO05D006686 4.9e-68 261.9 250 74.0
QL11p003539 Quercus lobata HOM05D005425 ORTHO05D006686 9.0e-54 214.5 306 60.1
COL.COLO4_21175 Corchorus olitorius HOM05D005425 ORTHO05D006686 5.1e-49 198.7 252 55.6
Thecc.09G067100 Theobroma cacao HOM05D005425 ORTHO05D006686 6.7e-49 198.4 252 55.6
Gorai.001G018900 Gossypium raimondii HOM05D005425 ORTHO05D006686 8.2e-47 191.4 117 81.2
Gohir.A07G018500 Gossypium hirsutum HOM05D005425 ORTHO05D006686 1.8e-46 190.3 117 80.3
Atru.chr7.1809 Acer truncatum HOM05D005425 ORTHO05D006686 4.0e-46 189.1 109 89.0
Ciclev10009195m.g Citrus clementina HOM05D005425 ORTHO05D006686 5.3e-46 188.7 105 90.5
Eucgr.C00752 Eucalyptus grandis HOM05D005425 ORTHO05D006686 5.3e-46 188.7 117 82.1
VMungo1215G3244 Vigna mungo HOM05D005425 ORTHO05D006686 5.3e-46 188.7 115 84.3
Gohir.D07G018300 Gossypium hirsutum HOM05D005425 ORTHO05D006686 6.9e-46 188.3 117 80.3
TWI34G0652 Tripterygium wilfordii HOM05D005425 ORTHO05D006686 6.9e-46 188.3 117 83.8
Duzib168G1380 Durio zibethinus HOM05D005425 ORTHO05D006686 1.2e-45 187.6 117 82.1
ECA247G3713 Erigeron canadensis HOM05D005425 ORTHO05D006686 2.0e-45 186.8 119 80.7
GSVIVG01000275001 Vitis vinifera HOM05D005425 ORTHO05D006686 2.0e-45 186.8 108 88.9
AUR62017596 Chenopodium quinoa HOM05D005425 ORTHO05D006686 2.6e-45 186.4 117 81.2
Dinv19577 Davidia involucrata HOM05D005425 ORTHO05D006686 2.6e-45 186.4 234 62.4
Prupe.7G189100 Prunus persica HOM05D005425 ORTHO05D006686 2.6e-45 186.4 113 84.1
TWI63G1799 Tripterygium wilfordii HOM05D005425 ORTHO05D006686 2.6e-45 186.4 116 81.9
Glyma.17G043500 Glycine max HOM05D005425 ORTHO05D006686 3.4e-45 186.0 116 81.9
arahy.Tifrunner.gnm1.ann1.I1NZHN Arachis hypogaea HOM05D005425 ORTHO05D006686 4.5e-45 185.7 117 81.2
PGR044G1074 Punica granatum HOM05D005425 ORTHO05D006686 4.5e-45 185.7 110 86.4
Glyma.13G116300 Glycine max HOM05D005425 ORTHO05D006686 5.8e-45 185.3 116 81.9
Duzib150G0231 Durio zibethinus HOM05D005425 ORTHO05D006686 7.6e-45 184.9 117 80.3
MD02G1106000 Malus domestica HOM05D005425 ORTHO05D006686 7.6e-45 184.9 116 84.5
MD15G1225900 Malus domestica HOM05D005425 ORTHO05D006686 1.0e-44 184.5 112 84.8
AUR62015135 Chenopodium quinoa HOM05D005425 ORTHO05D006686 1.3e-44 184.1 117 79.5
Lj4g0004112 Lotus japonicus HOM05D005425 ORTHO05D006686 1.3e-44 184.1 113 83.2
PSO675G8782 Papaver somniferum HOM05D005425 ORTHO05D006686 1.3e-44 184.1 114 80.7
Phvul.003G125400 Phaseolus vulgaris HOM05D005425 ORTHO05D006686 1.3e-44 184.1 108 87.0
arahy.Tifrunner.gnm1.ann1.A16VYK Arachis hypogaea HOM05D005425 ORTHO05D006686 2.2e-44 183.3 117 80.3
Ca_21353_v3 Cicer arietinum L. HOM05D005425 ORTHO05D006686 2.2e-44 183.3 116 80.2
Cc01_g12410 Coffea canephora HOM05D005425 ORTHO05D006686 2.9e-44 183.0 119 79.0
Lalb_Chr07g0181511 Lupinus albus HOM05D005425 ORTHO05D006686 2.9e-44 183.0 116 77.6
PSO717G0103 Papaver somniferum HOM05D005425 ORTHO05D006686 2.9e-44 183.0 114 80.7
Potri.006G217400 Populus trichocarpa HOM05D005425 ORTHO05D006686 3.8e-44 182.6 117 79.5
vmacro16402 Vaccinium macrocarpon HOM05D005425 ORTHO05D006686 4.9e-44 182.2 116 81.9
HanXRQChr02g0040411 Helianthus annuus HOM05D005425 ORTHO05D006686 6.5e-44 181.8 116 77.6
Lj4P729T25 Lonicera japonica HOM05D005425 ORTHO05D006686 6.5e-44 181.8 108 83.3
RcHm_v2.0_Chr2g0096571 Rosa chinensis HOM05D005425 ORTHO05D006686 8.4e-44 181.4 116 81.9
TPR.G12630 Trifolium pratense HOM05D005425 ORTHO05D006686 1.1e-43 181.0 117 77.8
Actinidia20626 Actinidia chinensis HOM05D005425 ORTHO05D006686 1.4e-43 180.6 108 88.0
CANSAT56G0436 Cannabis sativa HOM05D005425 ORTHO05D006686 3.2e-43 179.5 105 87.6
CANSAT56G2296 Cannabis sativa HOM05D005425 ORTHO05D006686 3.2e-43 179.5 105 87.6
Migut.C01372 Erythranthe guttata HOM05D005425 ORTHO05D006686 4.2e-43 179.1 116 77.6
EL10Ac9g22844 Beta vulgaris HOM05D005425 ORTHO05D006686 5.5e-43 178.7 117 76.9
ATR0006G051 Amborella trichopoda HOM05D005425 ORTHO05D006686 7.1e-43 178.3 115 82.6
FvH4_1g09870 Fragaria vesca HOM05D005425 ORTHO05D006686 1.2e-42 177.6 114 81.6
FAN19G0780 Fragaria x ananassa HOM05D005425 ORTHO05D006686 1.2e-42 177.6 114 81.6
CSS0042296 Camellia sinensis var. sinensis HOM05D005425 ORTHO05D006686 1.6e-42 177.2 104 86.5
Lalb_Chr12g0200431 Lupinus albus HOM05D005425 ORTHO05D006686 1.6e-42 177.2 108 82.4
Lsat_1_v5_gn_1_2721 Lactuca sativa HOM05D005425 ORTHO05D006686 2.1e-42 176.8 117 74.4
Sabra06G0167600 Salix brachista HOM05D005425 ORTHO05D006686 2.1e-42 176.8 114 78.9
SEGI_31971 Sequoiadendron giganteum HOM05D005425 ORTHO05D006686 2.1e-42 176.8 115 77.4
Medtr4g123593 Medicago truncatula HOM05D005425 ORTHO05D006686 2.7e-42 176.4 116 76.7
Nn6g31504 Nelumbo nucifera HOM05D005425 ORTHO05D006686 2.7e-42 176.4 105 85.7
Zm00001eb068040 Zea mays HOM05D005425 ORTHO05D006686 2.7e-42 176.4 108 82.4
Sc19g0002240 Simmondsia chinensis HOM05D005425 ORTHO05D006686 3.5e-42 176.0 115 78.3
Psat4g020320 Pisum sativum HOM05D005425 ORTHO05D006686 4.6e-42 175.6 110 80.0
DCAR_012869 Daucus carota HOM05D005425 ORTHO05D006686 7.9e-42 174.9 115 73.9
Os04g0653100 Oryza sativa ssp. japonica HOM05D005425 ORTHO05D006686 1.0e-41 174.5 107 81.3
Rhsim12G0137300 Rhododendron simsii HOM05D005425 ORTHO05D006686 1.8e-41 173.7 260 59.2
Aqoxy6G03062 Aquilegia oxysepala HOM05D005425 ORTHO05D006686 2.3e-41 173.3 111 81.1
Manes.03G055300 Manihot esculenta HOM05D005425 ORTHO05D006686 2.3e-41 173.3 113 76.1
Hund24245 Selenicereus undatus HOM05D000001 ORTHO05D000003 2.3e-41 173.3 114 75.4
MSTRG.1593 Avicennia marina HOM05D005425 ORTHO05D006686 3.0e-41 172.9 110 79.1
HPP92_027595 Vanilla planifolia HOM05D005425 ORTHO05D006686 3.9e-41 172.6 113 78.8
Oeu023197.1 Olea europaea HOM05D005425 ORTHO05D006686 5.1e-41 172.2 113 77.9
HPP92_002368 Vanilla planifolia HOM05D005425 ORTHO05D006686 5.1e-41 172.2 112 79.5
Nitab4.5_0000610g0160 Nicotiana tabacum HOM05D005425 ORTHO05D006686 2.5e-40 169.9 117 75.2
Ah.01g013630 Amaranthus hybridus HOM05D005425 ORTHO05D006686 3.3e-40 169.5 115 73.9
Peaxi162Scf00406g00239 Petunia axillaris HOM05D005425 ORTHO05D006686 4.3e-40 169.1 117 76.1
CAN.G764.11 Capsicum annuum HOM05D005425 ORTHO05D006686 5.7e-40 168.7 117 75.2
MBI13_g09074_MAGBIO Magnolia biondii HOM05D005425 ORTHO05D006686 7.4e-40 168.3 112 75.0
Manes.16G088201 Manihot esculenta HOM05D005425 ORTHO05D006686 7.4e-40 168.3 106 80.2
Sopen11g030870 Solanum pennellii HOM05D005425 ORTHO05D006686 7.4e-40 168.3 117 74.4
Sed0015214 Sechium edule HOM05D005425 ORTHO05D006686 9.7e-40 167.9 115 77.4
Solyc11g073240.2 Solanum lycopersicum HOM05D005425 ORTHO05D006686 1.3e-39 167.5 117 74.4
TAR383G0806 Trochodendron aralioides HOM05D005425 ORTHO05D006686 2.8e-39 166.4 131 70.2
MBI13_g05972_MAGBIO Magnolia biondii HOM05D005425 ORTHO05D006686 3.7e-39 166.0 112 76.8
CsaV3_1G041480 Cucumis sativus L. HOM05D005425 ORTHO05D006686 8.2e-39 164.9 112 75.9
PGSC0003DMG400015542 Solanum tuberosum HOM05D005425 ORTHO05D006686 1.1e-38 164.5 113 75.2
Pp3c23_11420 Physcomitrium patens HOM05D005425 ORTHO05D006686 4.1e-38 162.5 112 71.4
PGSC0003DMG401015541 Solanum tuberosum HOM05D005425 ORTHO05D006686 5.3e-38 162.2 108 78.7
PGSC0003DMG402015541 Solanum tuberosum HOM05D005425 ORTHO05D006686 5.3e-38 162.2 108 78.7
Carub.0005s0927 Capsella rubella HOM05D005425 ORTHO05D006686 6.9e-38 161.8 115 70.4
THA.LOC104810974 Tarenaya hassleriana HOM05D005425 ORTHO05D006686 6.9e-38 161.8 261 57.9
HPP92_010993 Vanilla planifolia HOM05D005425 ORTHO05D006686 6.9e-38 161.8 112 73.2
AT3G43520 Arabidopsis thaliana HOM05D005425 ORTHO05D006686 1.5e-37 160.6 115 68.7
CDE11G0474 Ceratophyllum demersum HOM05D005425 ORTHO05D006686 2.6e-37 159.8 116 69.8
THA.LOC104799598 Tarenaya hassleriana HOM05D005425 ORTHO05D006686 7.6e-37 158.3 108 73.1
AL5G21490 Arabidopsis lyrata HOM05D005425 ORTHO05D006686 1.0e-36 157.9 117 67.5
unitig_578.g16119 Utricularia gibba HOM05D005425 ORTHO05D006686 5.0e-36 155.6 109 71.6
Pp3c23_5560 Physcomitrium patens HOM05D005425 ORTHO05D006686 8.5e-36 154.8 109 67.9
FAN28G1834 Fragaria x ananassa HOM05D005425 ORTHO05D006686 1.4e-35 154.1 170 55.3
Aa31LG4G13370 Aethionema arabicum HOM05D005425 ORTHO05D006686 1.9e-35 153.7 262 50.8
BcaB02g10778 Brassica carinata HOM05D005425 ORTHO05D006686 3.2e-35 152.9 108 70.4
Sp5g17760 Schrenkiella parvula HOM05D005425 ORTHO05D006686 3.2e-35 152.9 117 65.8
CARHR098710 Cardamine hirsuta HOM05D005425 ORTHO05D006686 5.5e-35 152.1 115 64.3
BcaC01g02214 Brassica carinata HOM05D005425 ORTHO05D006686 9.4e-35 151.4 108 70.4
A06p26640 Brassica napus HOM05D005425 ORTHO05D006686 9.4e-35 151.4 108 70.4
C03p67740 Brassica napus HOM05D005425 ORTHO05D006686 9.4e-35 151.4 108 70.4
BolSC21t60236H Brassica oleracea HOM05D005425 ORTHO05D006686 9.4e-35 151.4 108 70.4
BraA06t25598Z Brassica rapa HOM05D005425 ORTHO05D006686 9.4e-35 151.4 108 70.4
FAN23G2130 Fragaria x ananassa HOM05D005425 ORTHO05D006686 9.4e-35 151.4 177 53.1
AUR62026084 Chenopodium quinoa HOM05D005425 ORTHO05D006686 2.7e-34 149.8 108 70.4
Ah.04g151490 Amaranthus hybridus HOM05D005425 ORTHO05D006686 4.6e-34 149.1 108 70.4
SMO347G0418 Selaginella moellendorffii HOM05D005425 ORTHO05D006686 6.1e-34 148.7 115 67.8
AUR62024499 Chenopodium quinoa HOM05D005425 ORTHO05D006686 3.0e-33 146.4 105 70.5
EL10Ac3g07129 Beta vulgaris HOM05D005425 ORTHO05D006686 3.9e-33 146.0 114 64.9
Sc13g0001610 Simmondsia chinensis HOM05D005425 ORTHO05D006686 3.9e-33 146.0 109 68.8
THA.LOC104804448 Tarenaya hassleriana HOM05D005425 ORTHO05D006686 3.9e-33 146.0 108 66.7
SEGI_36327 Sequoiadendron giganteum HOM05D005425 ORTHO05D006686 2.5e-32 143.3 91 79.1
SGA_v2.0_scaffold118G32605 Striga asiatica HOM05D005425 ORTHO05D006686 5.7e-32 142.1 115 65.2
AT2G26240 Arabidopsis thaliana HOM05D005425 ORTHO05D006686 2.2e-31 140.2 104 67.3
Sp4g06390 Schrenkiella parvula HOM05D005425 ORTHO05D006686 2.2e-31 140.2 104 68.3
AagrBONN_evm.TU.Sc2ySwM_344.3815 Anthoceros agrestis HOM05D005425 ORTHO05D006686 2.8e-31 139.8 102 66.7
SMO351G0348 Selaginella moellendorffii HOM05D005425 ORTHO05D006686 6.3e-31 138.7 105 63.8
BcaC07g40833 Brassica carinata HOM05D005425 ORTHO05D006686 8.2e-31 138.3 104 66.3
A09p55370 Brassica napus HOM05D000181 ORTHO05D004115 8.2e-31 138.3 104 66.3
C08p38290 Brassica napus HOM05D000181 ORTHO05D004115 8.2e-31 138.3 104 66.3
BolC8t51404H Brassica oleracea HOM05D005425 ORTHO05D006686 8.2e-31 138.3 104 66.3
BraA09t40938Z Brassica rapa HOM05D005425 ORTHO05D006686 8.2e-31 138.3 104 66.3
CARHR115050 Cardamine hirsuta HOM05D005425 ORTHO05D006686 8.2e-31 138.3 104 66.3
BcaB08g35283 Brassica carinata HOM05D005425 ORTHO05D006686 1.1e-30 137.9 104 66.3
CDE05G1879 Ceratophyllum demersum HOM05D005425 ORTHO05D006686 1.4e-30 137.5 97 70.1
AL4G18820 Arabidopsis lyrata HOM05D005425 ORTHO05D006686 3.1e-30 136.3 104 65.4
Carub.0004s0606 Capsella rubella HOM05D005425 ORTHO05D006686 3.1e-30 136.3 107 65.4
PGR142G0340 Punica granatum HOM05D005425 ORTHO05D006686 1.2e-29 134.4 108 68.5
vmacro13523 Vaccinium macrocarpon HOM05D005425 ORTHO05D006686 1.2e-29 134.4 104 71.2
Mapoly0059s0086 Marchantia polymorpha HOM05D005425 ORTHO05D006686 7.7e-29 131.7 95 69.5
Aa31LG5G9560 Aethionema arabicum HOM05D005425 ORTHO05D006686 1.7e-28 130.6 104 64.4
Thhalv10002166m.g Eutrema salsugineum HOM05D005425 ORTHO05D006686 1.4e-22 110.9 85 65.9
Thhalv10002673m.g Eutrema salsugineum HOM05D005425 ORTHO05D006686 8.0e-18 95.1 71 66.2
CBR_g16036 Chara braunii HOM05D005425 ORTHO05D006686 1.4e-17 94.4 103 47.6
Zm00001eb432380 Zea mays HOM05D005425 ORTHO05D006686 1.7e-15 87.4 64 71.9
FvH4_1g06370 Fragaria vesca HOM05D005425 ORTHO05D046282 2.9e-12 76.6 69 65.2
FAN19G2796 Fragaria x ananassa HOM05D005425 ORTHO05D046282 8.5e-12 75.1 69 63.8
Oeu020536.1 Olea europaea HOM05D005425 ORTHO05D006686 5.2e-09 65.9 62 56.5
C06p06010 Brassica napus HOM05D004888 ORTHO05D005792 1.3e-07 61.2 104 42.3
BolC6t35714H Brassica oleracea HOM05D004888 ORTHO05D005792 1.3e-07 61.2 104 42.3
Migut.M01776 Erythranthe guttata HOM05D004888 ORTHO05D005792 1.3e-07 61.2 102 38.2
Zm00001eb041420 Zea mays HOM05D001962 ORTHO05D002236 1.7e-07 60.8 35 85.7
BraA06t23494Z Brassica rapa HOM05D004888 ORTHO05D005792 2.8e-07 60.1 103 39.8
QL08p010712 Quercus lobata HOM05D004888 ORTHO05D005792 2.8e-07 60.1 101 40.6
QL08p011155 Quercus lobata HOM05D004888 ORTHO05D005792 2.8e-07 60.1 101 40.6
BcaC08g43255 Brassica carinata HOM05D004888 ORTHO05D005792 4.8e-07 59.3 104 40.4
Nitab4.5_0001393g0120 Nicotiana tabacum HOM05D004888 ORTHO05D005792 6.3e-07 58.9 102 38.2
SGA_v2.0_scaffold8G04307 Striga asiatica HOM05D004888 ORTHO05D005792 6.3e-07 58.9 102 39.2
Thecc.07G042500 Theobroma cacao HOM05D004888 ORTHO05D005792 6.3e-07 58.9 102 37.3
unitig_62.g23280 Utricularia gibba HOM05D004888 ORTHO05D005792 6.3e-07 58.9 100 40.0
BcaB07g33513 Brassica carinata HOM05D004888 ORTHO05D005792 8.2e-07 58.5 102 39.2
A06p02870 Brassica napus HOM05D004888 ORTHO05D005792 8.2e-07 58.5 102 39.2
Potri.011G138100 Populus trichocarpa HOM05D004888 ORTHO05D005792 8.2e-07 58.5 101 39.6
PGSC0003DMG400014390 Solanum tuberosum HOM05D004888 ORTHO05D005792 8.2e-07 58.5 102 38.2
Duzib213G0117 Durio zibethinus HOM05D004888 ORTHO05D005792 1.1e-06 58.2 102 36.3
CAN.G1781.4 Capsicum annuum HOM05D004888 ORTHO05D005792 1.4e-06 57.8 104 36.5
Nitab4.5_0005048g0090 Nicotiana tabacum HOM05D004888 ORTHO05D005792 1.4e-06 57.8 95 40.0
Peaxi162Scf00964g00141 Petunia axillaris HOM05D004888 ORTHO05D005792 1.4e-06 57.8 101 38.6
CSS0004402 Camellia sinensis var. sinensis HOM05D004888 ORTHO05D005792 1.8e-06 57.4 102 38.2
Solyc10g006310.3 Solanum lycopersicum HOM05D004888 ORTHO05D005792 1.8e-06 57.4 103 39.8
MSTRG.6911 Avicennia marina HOM05D004888 ORTHO05D005792 2.4e-06 57.0 102 38.2
Lsat_1_v5_gn_7_108760 Lactuca sativa HOM05D004888 ORTHO05D005792 2.4e-06 57.0 103 38.8
MBI18_g42744_MAGBIO Magnolia biondii HOM05D004888 ORTHO05D005792 2.4e-06 57.0 96 38.5
Manes.03G124500 Manihot esculenta HOM05D004888 ORTHO05D005792 2.4e-06 57.0 102 35.3
Rhsim06G0216300 Rhododendron simsii HOM05D004888 ORTHO05D005792 2.4e-06 57.0 102 37.3
Sopen10g002260 Solanum pennellii HOM05D004888 ORTHO05D005792 2.4e-06 57.0 103 39.8
Gohir.D01G066100 Gossypium hirsutum HOM05D004888 ORTHO05D005792 3.1e-06 56.6 100 36.0
Gorai.002G088000 Gossypium raimondii HOM05D004888 ORTHO05D005792 3.1e-06 56.6 100 36.0
vmacro11732 Vaccinium macrocarpon HOM05D004888 ORTHO05D005792 3.1e-06 56.6 102 39.2
PGR031G1607 Punica granatum HOM05D004888 ORTHO05D005792 4.1e-06 56.2 102 39.2
DCAR_010046 Daucus carota HOM05D004888 ORTHO05D005792 5.3e-06 55.8 100 36.0
Potri.001G424000 Populus trichocarpa HOM05D004888 ORTHO05D005792 5.3e-06 55.8 101 38.6
Sopen07g032670 Solanum pennellii HOM05D004888 ORTHO05D005792 5.3e-06 55.8 101 36.6
Nitab4.5_0003812g0040 Nicotiana tabacum HOM05D004888 ORTHO05D005792 7.0e-06 55.5 103 36.9
CANSAT10G0001 Cannabis sativa HOM05D004888 ORTHO05D005792 9.1e-06 55.1 102 37.3
CANSAT21G1950 Cannabis sativa HOM05D004888 ORTHO05D005792 9.1e-06 55.1 102 37.3


User provided reference genes

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