Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa010652 Carpinus fangiana HOM05D000716 ORTHO05D008300 1.0e-24 115.9 60 100.0
Cfa010650 Carpinus fangiana HOM05D000716 ORTHO05D008300 5.8e-15 83.6 44 95.5
Haze_03059 Corylus avellana HOM05D000321 ORTHO05D008300 2.2e-14 81.6 44 93.2
Atru.chr11.2438 Acer truncatum HOM05D000716 ORTHO05D008300 3.7e-14 80.9 44 93.2
CiPaw.13G011200 Carya illinoinensis HOM05D000716 ORTHO05D008300 6.4e-14 80.1 44 90.9
Cpa.g.sc197.3 Carica papaya HOM05D000716 ORTHO05D008300 8.3e-14 79.7 44 90.9
TWI63G0606 Tripterygium wilfordii HOM05D000716 ORTHO05D008300 8.3e-14 79.7 44 90.9
Gohir.A10G182500 Gossypium hirsutum HOM05D000716 ORTHO05D008300 1.4e-13 79.0 44 88.6
Gorai.011G212500 Gossypium raimondii HOM05D000716 ORTHO05D008300 1.4e-13 79.0 44 88.6
COL.COLO4_35450 Corchorus olitorius HOM05D000716 ORTHO05D008300 1.9e-13 78.6 44 88.6
Thecc.10G170700 Theobroma cacao HOM05D000716 ORTHO05D008300 1.9e-13 78.6 44 88.6
FvH4_7g02490 Fragaria vesca HOM05D000716 ORTHO05D008300 2.4e-13 78.2 44 88.6
FAN03G0513 Fragaria x ananassa HOM05D000716 ORTHO05D008300 2.4e-13 78.2 44 88.6
FAN06G4889 Fragaria x ananassa HOM05D000716 ORTHO05D008300 2.4e-13 78.2 44 88.6
QL04p014065 Quercus lobata HOM05D000716 ORTHO05D008300 2.4e-13 78.2 44 90.9
CANSAT80G0647 Cannabis sativa HOM05D000716 ORTHO05D008300 3.2e-13 77.8 44 88.6
Gohir.D10G189200 Gossypium hirsutum HOM05D000716 ORTHO05D008300 3.2e-13 77.8 44 86.4
GSVIVG01000832001 Vitis vinifera HOM05D000716 ORTHO05D008300 3.2e-13 77.8 44 88.6
DCAR_031825 Daucus carota HOM05D000716 ORTHO05D008300 4.1e-13 77.4 44 88.6
Dinv01120 Davidia involucrata HOM05D000716 ORTHO05D008300 7.1e-13 76.6 44 86.4
Dinv09250 Davidia involucrata HOM05D000716 ORTHO05D008300 7.1e-13 76.6 44 86.4
Prupe.2G030600 Prunus persica HOM05D000716 ORTHO05D008300 7.1e-13 76.6 44 86.4
vmacro13734 Vaccinium macrocarpon HOM05D000716 ORTHO05D008300 7.1e-13 76.6 44 84.1
Duzib114G0335 Durio zibethinus HOM05D000716 ORTHO05D008300 9.2e-13 76.3 44 86.4
RcHm_v2.0_Chr1g0321131 Rosa chinensis HOM05D000716 ORTHO05D008300 9.2e-13 76.3 44 86.4
TAR623G0975 Trochodendron aralioides HOM05D000716 ORTHO05D008300 9.2e-13 76.3 47 80.9
Actinidia06267 Actinidia chinensis HOM05D000716 ORTHO05D008300 1.2e-12 75.9 44 84.1
Ciclev10030698m.g Citrus clementina HOM05D000716 ORTHO05D008300 1.2e-12 75.9 44 86.4
MD02G1293000 Malus domestica HOM05D000716 ORTHO05D008300 2.1e-12 75.1 44 88.6
MD07G1034100 Malus domestica HOM05D000716 ORTHO05D008300 2.1e-12 75.1 44 86.4
Duzib128G1102 Durio zibethinus HOM05D000716 ORTHO05D008300 2.7e-12 74.7 44 84.1
GSVIVG01001943001 Vitis vinifera HOM05D000716 ORTHO05D008300 2.7e-12 74.7 44 86.4
Dinv32042 Davidia involucrata HOM05D000716 ORTHO05D008300 3.5e-12 74.3 44 84.1
CSS0010368 Camellia sinensis var. sinensis HOM05D000716 ORTHO05D008300 6.0e-12 73.6 44 86.4
Eucgr.G03250 Eucalyptus grandis HOM05D000716 ORTHO05D008300 6.0e-12 73.6 44 86.4
Rhsim07G0063200 Rhododendron simsii HOM05D000716 ORTHO05D008300 6.0e-12 73.6 44 79.5
Lj9A647G37 Lonicera japonica HOM05D000716 ORTHO05D008300 1.0e-11 72.8 44 84.1
Medtr3g019360 Medicago truncatula HOM05D000716 ORTHO05D008300 1.0e-11 72.8 44 84.1
Phvul.005G031100 Phaseolus vulgaris HOM05D000716 ORTHO05D008300 1.0e-11 72.8 44 84.1
TPR.G3874 Trifolium pratense HOM05D000716 ORTHO05D008300 1.0e-11 72.8 44 84.1
Actinidia14086 Actinidia chinensis HOM05D000716 ORTHO05D008300 1.7e-11 72.0 44 81.8
Actinidia19449 Actinidia chinensis HOM05D000716 ORTHO05D008300 1.7e-11 72.0 44 81.8
Glyma.04G140132 Glycine max HOM05D000716 ORTHO05D008300 1.7e-11 72.0 44 84.1
Manes.04G164900 Manihot esculenta HOM05D000716 ORTHO05D008300 2.3e-11 71.6 44 81.8
arahy.Tifrunner.gnm1.ann1.FKA8YF Arachis hypogaea HOM05D000716 ORTHO05D008300 3.0e-11 71.2 44 79.5
arahy.Tifrunner.gnm1.ann1.G6Z95W Arachis hypogaea HOM05D000716 ORTHO05D008300 3.0e-11 71.2 44 79.5
Hund13334 Selenicereus undatus HOM05D000716 ORTHO05D008300 3.0e-11 71.2 47 76.6
Potri.003G201000 Populus trichocarpa HOM05D000716 ORTHO05D008300 5.1e-11 70.5 44 81.8
TWI38G2247 Tripterygium wilfordii HOM05D000716 ORTHO05D008300 5.1e-11 70.5 44 84.1
VMungo1080G1793 Vigna mungo HOM05D000716 ORTHO05D008300 5.1e-11 70.5 44 81.8
Ca_04529_v3 Cicer arietinum L. HOM05D000716 ORTHO05D008300 6.6e-11 70.1 44 79.5
Ca_30978_v3 Cicer arietinum L. HOM05D000716 ORTHO05D008300 6.6e-11 70.1 44 79.5
Manes.11G003600 Manihot esculenta HOM05D000716 ORTHO05D008300 6.6e-11 70.1 44 79.5
Nn7g36514 Nelumbo nucifera HOM05D000716 ORTHO05D008300 6.6e-11 70.1 44 77.3
ECA234G3719 Erigeron canadensis HOM05D000716 ORTHO05D008300 8.6e-11 69.7 44 79.5
Hma1.2p1_0053F.1_g030870 Hydrangea macrophylla HOM05D000716 ORTHO05D008300 8.6e-11 69.7 55 65.5
Lalb_Chr25g0282321 Lupinus albus HOM05D000716 ORTHO05D008300 1.1e-10 69.3 44 79.5
Glyma.11G152500 Glycine max HOM05D000716 ORTHO05D008300 1.5e-10 68.9 44 81.8
Lj3g0003771 Lotus japonicus HOM05D000716 ORTHO05D008300 1.5e-10 68.9 44 81.8
Sabra03G0148600 Salix brachista HOM05D000716 ORTHO05D008300 2.5e-10 68.2 44 77.3
HanXRQChr16g0525331 Helianthus annuus HOM05D000716 ORTHO05D008300 3.3e-10 67.8 44 79.5
Lsat_1_v5_gn_4_29860 Lactuca sativa HOM05D000716 ORTHO05D008300 3.3e-10 67.8 44 77.3
Psat5g217360 Pisum sativum HOM05D000716 ORTHO05D008300 4.3e-10 67.4 44 79.5
Sabra01G0018300 Salix brachista HOM05D000716 ORTHO05D008300 4.3e-10 67.4 44 79.5
Aqoxy1G00338 Aquilegia oxysepala HOM05D000716 ORTHO05D008300 5.6e-10 67.0 44 77.3
Potri.001G024600 Populus trichocarpa HOM05D000716 ORTHO05D008300 5.6e-10 67.0 44 77.3
Glyma.12G040400 Glycine max HOM05D000716 ORTHO05D008300 7.3e-10 66.6 44 79.5
PSO339G0025 Papaver somniferum HOM05D000716 ORTHO05D008300 7.3e-10 66.6 44 75.0
PGR031G0769 Punica granatum HOM05D000716 ORTHO05D008300 7.3e-10 66.6 44 75.0
Oeu056564.1 Olea europaea HOM05D000716 ORTHO05D008300 1.2e-09 65.9 44 75.0
Peaxi162Scf00309g00334 Petunia axillaris HOM05D000716 ORTHO05D008300 1.2e-09 65.9 44 75.0
AUR62007677 Chenopodium quinoa HOM05D000716 ORTHO05D008300 1.6e-09 65.5 44 75.0
AUR62037220 Chenopodium quinoa HOM05D000716 ORTHO05D008300 1.6e-09 65.5 44 75.0
Glyma.11G114500 Glycine max HOM05D000716 ORTHO05D008300 1.6e-09 65.5 44 77.3
PSO384G1427 Papaver somniferum HOM05D000716 ORTHO05D008300 1.6e-09 65.5 44 72.7
AUR62026832 Chenopodium quinoa HOM05D000716 ORTHO05D008300 2.1e-09 65.1 44 75.0
Nitab4.5_0000316g0100 Nicotiana tabacum HOM05D000716 ORTHO05D008300 2.1e-09 65.1 44 75.0
MBI19_g23016_MAGBIO Magnolia biondii HOM05D000716 ORTHO05D008300 2.8e-09 64.7 43 74.4
Nitab4.5_0001888g0050 Nicotiana tabacum HOM05D000716 ORTHO05D008300 3.6e-09 64.3 45 73.3
EL10Ac2g02846 Beta vulgaris HOM05D000716 ORTHO05D008300 4.7e-09 63.9 43 74.4
Solyc01g068490.4 Solanum lycopersicum HOM05D000716 ORTHO05D008300 4.7e-09 63.9 44 72.7
Sopen01g030450 Solanum pennellii HOM05D000716 ORTHO05D008300 4.7e-09 63.9 44 72.7
CAN.G1571.6 Capsicum annuum HOM05D000716 ORTHO05D008300 6.2e-09 63.5 44 72.7
ClCG05G020740 Citrullus lanatus HOM05D000716 ORTHO05D008300 6.2e-09 63.5 44 72.7
Oeu003919.1 Olea europaea HOM05D000716 ORTHO05D008300 6.2e-09 63.5 43 74.4
MELO3C015024.2 Cucumis melo HOM05D000716 ORTHO05D008300 8.1e-09 63.2 44 72.7
CsaV3_5G014750 Cucumis sativus L. HOM05D000716 ORTHO05D008300 8.1e-09 63.2 44 72.7
PGSC0003DMG400000836 Solanum tuberosum HOM05D000716 ORTHO05D008300 1.4e-08 62.4 44 70.5
Lj3g0026059 Lotus japonicus HOM05D000716 ORTHO05D008300 1.8e-08 62.0 44 70.5
Sc10g0004290 Simmondsia chinensis HOM05D000716 ORTHO05D008300 1.8e-08 62.0 47 66.0
Sed0026818 Sechium edule HOM05D000716 ORTHO05D008300 3.1e-08 61.2 44 70.5
MSTRG.5059 Avicennia marina HOM05D000716 ORTHO05D008300 5.2e-08 60.5 44 72.7
MSTRG.20529 Avicennia marina HOM05D000716 ORTHO05D008300 8.9e-08 59.7 44 68.2
SalBow6G2938 Salvia bowleyana HOM05D000716 ORTHO05D008300 8.9e-08 59.7 44 70.5
HPP92_025008 Vanilla planifolia HOM05D000716 ORTHO05D008300 1.5e-07 58.9 44 65.9
SGA_v2.0_scaffold5G02929 Striga asiatica HOM05D000716 ORTHO05D008300 5.8e-07 57.0 43 67.4
Cc02_g30350 Coffea canephora HOM05D000716 ORTHO05D008300 7.6e-07 56.6 44 63.6
ATR0721G009 Amborella trichopoda HOM05D000716 ORTHO05D008300 1.3e-06 55.8 43 62.8


User provided reference genes

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