Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa010616 Carpinus fangiana HOM05D006993 ORTHO05D008336 5.9e-72 274.2 154 100.0
GSVIVG01006115001 Vitis vinifera HOM05D006993 ORTHO05D008336 8.9e-60 233.8 153 76.5
CiPaw.13G058900 Carya illinoinensis HOM05D006993 ORTHO05D008336 2.9e-58 228.8 152 82.9
Prupe.5G011000 Prunus persica HOM05D006993 ORTHO05D008336 5.9e-56 221.1 152 73.7
TAR626G0971 Trochodendron aralioides HOM05D006993 ORTHO05D008336 3.9e-55 218.4 154 71.4
QL09p044784 Quercus lobata HOM05D006993 ORTHO05D008336 1.9e-54 216.1 152 71.7
FvH4_5g27060 Fragaria vesca HOM05D006993 ORTHO05D008336 4.3e-54 214.9 153 72.5
Actinidia23138 Actinidia chinensis HOM05D006993 ORTHO05D008336 5.6e-54 214.5 157 73.2
MELO3C012348.2 Cucumis melo HOM05D006993 ORTHO05D008336 7.3e-54 214.2 153 68.0
FAN08G3673 Fragaria x ananassa HOM05D006993 ORTHO05D008336 9.5e-54 213.8 153 71.9
Gohir.A11G146100 Gossypium hirsutum HOM05D006993 ORTHO05D008336 9.5e-54 213.8 166 65.7
Gorai.007G162900 Gossypium raimondii HOM05D006993 ORTHO05D008336 9.5e-54 213.8 166 65.7
Duzib211G0651 Durio zibethinus HOM05D006993 ORTHO05D008336 1.2e-53 213.4 176 63.1
CsaV3_5G035360 Cucumis sativus L. HOM05D006993 ORTHO05D008336 2.1e-53 212.6 153 66.7
Manes.13G058300 Manihot esculenta HOM05D006993 ORTHO05D008336 2.1e-53 212.6 152 71.1
Ciclev10016771m.g Citrus clementina HOM05D006993 ORTHO05D008336 6.1e-53 211.1 155 76.1
Thecc.01G203600 Theobroma cacao HOM05D006993 ORTHO05D008336 1.8e-52 209.5 176 62.5
TPR.G5057 Trifolium pratense HOM05D006993 ORTHO05D008336 3.1e-52 208.8 154 72.7
CSS0020795 Camellia sinensis var. sinensis HOM05D006993 ORTHO05D008336 5.2e-52 208.0 153 69.3
CANSAT11G1969 Cannabis sativa HOM05D006993 ORTHO05D008336 5.2e-52 208.0 150 69.3
Nn1g08444 Nelumbo nucifera HOM05D006993 ORTHO05D008336 5.2e-52 208.0 150 77.3
Potri.014G172800 Populus trichocarpa HOM05D006993 ORTHO05D008336 2.0e-51 206.1 150 75.3
Sed0005772 Sechium edule HOM05D006993 ORTHO05D008336 2.0e-51 206.1 153 66.0
CSS0002802 Camellia sinensis var. sinensis HOM05D006993 ORTHO05D008336 3.4e-51 205.3 164 68.9
CSS0001652 Camellia sinensis var. sinensis HOM05D006993 ORTHO05D008336 4.4e-51 204.9 153 69.9
Sabra14G0132300 Salix brachista HOM05D006993 ORTHO05D008336 7.5e-51 204.1 150 76.0
Oeu049571.1 Olea europaea HOM05D006993 ORTHO05D008336 9.8e-51 203.8 156 72.4
AUR62028621 Chenopodium quinoa HOM05D006993 ORTHO05D008336 1.7e-50 203.0 152 75.0
Medtr8g028100 Medicago truncatula HOM05D006993 ORTHO05D008336 1.7e-50 203.0 154 71.4
MSTRG.18520 Avicennia marina HOM05D006993 ORTHO05D008336 2.2e-50 202.6 156 64.1
COL.COLO4_19719 Corchorus olitorius HOM05D006993 ORTHO05D008336 2.9e-50 202.2 176 64.8
FAN18G3928 Fragaria x ananassa HOM05D006993 ORTHO05D008336 3.7e-50 201.8 156 67.9
Lalb_Chr17g0342261 Lupinus albus HOM05D006993 ORTHO05D008336 3.7e-50 201.8 152 70.4
MD00G1144800 Malus domestica HOM05D006993 ORTHO05D008336 3.7e-50 201.8 157 68.8
DCAR_018599 Daucus carota HOM05D000190 ORTHO05D008336 8.3e-50 200.7 154 74.7
Duzib138G1606 Durio zibethinus HOM05D006993 ORTHO05D008336 8.3e-50 200.7 176 59.7
CSS0028614 Camellia sinensis var. sinensis HOM05D006993 ORTHO05D008336 1.9e-49 199.5 164 68.9
Lj3g0006688 Lotus japonicus HOM05D006993 ORTHO05D008336 1.9e-49 199.5 154 70.8
CDE03G0427 Ceratophyllum demersum HOM05D006993 ORTHO05D008336 2.4e-49 199.1 154 66.9
ATR0751G064 Amborella trichopoda HOM05D006993 ORTHO05D008336 3.2e-49 198.7 158 65.2
Aqoxy4G02329 Aquilegia oxysepala HOM05D006993 ORTHO05D008336 3.2e-49 198.7 155 69.0
Glyma.07G059600 Glycine max HOM05D006993 ORTHO05D008336 7.0e-49 197.6 153 75.8
PSO541G2665 Papaver somniferum HOM05D006993 ORTHO05D008336 7.0e-49 197.6 155 67.7
Atru.chr6.3467 Acer truncatum HOM05D006993 ORTHO05D008336 1.6e-48 196.4 160 64.4
Lj2A1109T68 Lonicera japonica HOM05D006993 ORTHO05D008336 1.6e-48 196.4 111 82.9
PSO675G6922 Papaver somniferum HOM05D006993 ORTHO05D008336 2.7e-48 195.7 155 63.9
Sopen09g012650 Solanum pennellii HOM05D006993 ORTHO05D008336 2.7e-48 195.7 152 71.7
vmacro02850 Vaccinium macrocarpon HOM05D006993 ORTHO05D008336 3.5e-48 195.3 164 64.0
AUR62008046 Chenopodium quinoa HOM05D006993 ORTHO05D008336 6.0e-48 194.5 150 72.7
EL10Ac5g10566 Beta vulgaris HOM05D006993 ORTHO05D008336 7.8e-48 194.1 150 74.0
Cpa.g.sc8.8 Carica papaya HOM05D006993 ORTHO05D008336 7.8e-48 194.1 110 80.9
Oeu013422.3 Olea europaea HOM05D006993 ORTHO05D008336 1.3e-47 193.4 162 62.3
TWI18G0796 Tripterygium wilfordii HOM05D006993 ORTHO05D008336 1.7e-47 193.0 160 68.8
Rhsim13G0056200 Rhododendron simsii HOM05D006570 ORTHO05D008193 2.3e-47 192.6 152 72.4
Solyc09g018890.3 Solanum lycopersicum HOM05D006993 ORTHO05D008336 2.3e-47 192.6 152 65.8
Lsat_1_v5_gn_9_15700 Lactuca sativa HOM05D006993 ORTHO05D008336 3.0e-47 192.2 154 64.3
MD15G1141400 Malus domestica HOM05D006993 ORTHO05D008336 3.0e-47 192.2 150 65.3
VMungo0331G1491 Vigna mungo HOM05D006993 ORTHO05D008336 3.0e-47 192.2 154 74.0
Peaxi162Scf12724g00016 Petunia axillaris HOM05D006993 ORTHO05D008336 3.9e-47 191.8 159 74.8
Ca_23580_v3 Cicer arietinum L. HOM05D006993 ORTHO05D008336 5.0e-47 191.4 153 75.2
Nitab4.5_0009028g0040 Nicotiana tabacum HOM05D006993 ORTHO05D008336 5.0e-47 191.4 157 70.1
PGSC0003DMG400020288 Solanum tuberosum HOM05D006993 ORTHO05D008336 6.6e-47 191.0 152 76.3
arahy.Tifrunner.gnm1.ann1.RC1IE0 Arachis hypogaea HOM05D006993 ORTHO05D008336 8.6e-47 190.7 159 71.1
CDE06G2320 Ceratophyllum demersum HOM05D006993 ORTHO05D008336 1.9e-46 189.5 161 62.7
Eucgr.H00675 Eucalyptus grandis HOM05D006993 ORTHO05D008336 1.9e-46 189.5 157 68.8
Glyma.16G028500 Glycine max HOM05D006993 ORTHO05D008336 2.5e-46 189.1 155 72.3
Cc01_g15720 Coffea canephora HOM05D006993 ORTHO05D008336 4.3e-46 188.3 166 65.1
RcHm_v2.0_Chr7g0218061 Rosa chinensis HOM05D006993 ORTHO05D008336 5.6e-46 188.0 154 69.5
Gohir.D07G168900 Gossypium hirsutum HOM05D006993 ORTHO05D008336 7.3e-46 187.6 152 63.2
FAN13G2105 Fragaria x ananassa HOM05D006993 ORTHO05D008336 9.5e-46 187.2 153 69.9
Migut.D00756 Erythranthe guttata HOM05D006993 ORTHO05D008336 1.2e-45 186.8 155 59.4
Potri.002G217400 Populus trichocarpa HOM05D006993 ORTHO05D008336 1.6e-45 186.4 150 72.7
FAN04G3061 Fragaria x ananassa HOM05D006993 ORTHO05D008336 6.2e-45 184.5 153 68.6
Phvul.010G110000 Phaseolus vulgaris HOM05D006993 ORTHO05D008336 6.2e-45 184.5 150 74.7
SalBow2G0576 Salvia bowleyana HOM05D006993 ORTHO05D008336 8.1e-45 184.1 109 77.1
MBI15_g35689_MAGBIO Magnolia biondii HOM05D006993 ORTHO05D008336 1.4e-44 183.3 150 68.0
PGR083G2302 Punica granatum HOM05D006993 ORTHO05D008336 1.4e-44 183.3 164 66.5
CAN.G3.14 Capsicum annuum HOM05D006993 ORTHO05D008336 2.3e-44 182.6 158 65.8
Aa31sc249G30 Aethionema arabicum HOM05D006993 ORTHO05D008336 4.0e-44 181.8 152 59.9
Duzib133G0497 Durio zibethinus HOM05D006993 ORTHO05D008336 4.0e-44 181.8 109 78.9
AL3G41710 Arabidopsis lyrata HOM05D006993 ORTHO05D008336 5.2e-44 181.4 151 62.3
A07p06910 Brassica napus HOM05D006993 ORTHO05D008336 6.8e-44 181.0 151 62.3
BraA07t28482Z Brassica rapa HOM05D006993 ORTHO05D008336 6.8e-44 181.0 151 62.3
Gorai.N000700 Gossypium raimondii HOM05D006993 ORTHO05D008336 1.2e-43 180.3 158 58.9
AT2G04039 Arabidopsis thaliana HOM05D006993 ORTHO05D008336 1.5e-43 179.9 154 61.7
BcaC06g35821 Brassica carinata HOM05D006993 ORTHO05D008336 2.6e-43 179.1 151 61.6
BolC7t41517H Brassica oleracea HOM05D006993 ORTHO05D008336 2.6e-43 179.1 151 61.6
C07p10500 Brassica napus HOM05D006993 ORTHO05D008336 9.8e-43 177.2 151 60.9
Thhalv10002670m.g Eutrema salsugineum HOM05D006993 ORTHO05D008336 9.8e-43 177.2 155 60.0
ECA247G3631 Erigeron canadensis HOM05D006993 ORTHO05D008336 1.3e-42 176.8 163 56.4
Zm00001eb327210 Zea mays HOM05D006993 ORTHO05D008336 1.7e-42 176.4 158 60.1
BcaB06g26751 Brassica carinata HOM05D006993 ORTHO05D008336 3.7e-42 175.3 111 74.8
SalBow6G6587 Salvia bowleyana HOM05D006993 ORTHO05D008336 6.4e-42 174.5 152 63.2
CARHR101970 Cardamine hirsuta HOM05D006993 ORTHO05D008336 1.1e-41 173.7 111 73.9
HanXRQChr08g0230791 Helianthus annuus HOM05D006993 ORTHO05D008336 3.2e-41 172.2 162 54.3
Zm00001eb108910 Zea mays HOM05D006993 ORTHO05D008336 3.2e-41 172.2 152 52.6
Sp3g23040 Schrenkiella parvula HOM05D006993 ORTHO05D008336 1.6e-40 169.9 111 72.1
Os07g0607800 Oryza sativa ssp. japonica HOM05D006993 ORTHO05D008336 1.3e-39 166.8 106 67.9
SalBow2G2967 Salvia bowleyana HOM05D006993 ORTHO05D008336 5.1e-39 164.9 159 59.7
Carub.0003s2586 Capsella rubella HOM05D006993 ORTHO05D008336 6.6e-39 164.5 106 74.5
unitig_736.g22974 Utricularia gibba HOM05D006993 ORTHO05D008336 6.6e-39 164.5 153 53.6
Ah.11g050660 Amaranthus hybridus HOM05D006993 ORTHO05D008336 8.9e-36 154.1 198 47.5
Gohir.A07G162350 Gossypium hirsutum HOM05D006993 ORTHO05D008336 1.5e-35 153.3 178 50.0
TWI36G0749 Tripterygium wilfordii HOM05D006993 ORTHO05D008336 1.6e-32 143.3 136 60.3
ClCG05G021810 Citrullus lanatus HOM05D006993 ORTHO05D008336 2.7e-32 142.5 144 52.8
arahy.Tifrunner.gnm1.ann1.6DX8AG Arachis hypogaea HOM05D006993 ORTHO05D008336 3.5e-32 142.1 88 75.0
Nitab4.5_0005967g0020 Nicotiana tabacum HOM05D006993 ORTHO05D008336 2.3e-31 139.4 157 58.6
AagrBONN_evm.TU.Sc2ySwM_344.1609 Anthoceros agrestis HOM05D006993 ORTHO05D008336 9.9e-27 124.0 104 51.9
SMO111G0038 Selaginella moellendorffii HOM05D006993 ORTHO05D008336 2.4e-25 119.4 100 53.0
Mapoly0043s0057 Marchantia polymorpha HOM05D006993 ORTHO05D008336 1.2e-24 117.1 103 50.5
Haze_03547 Corylus avellana HOM05D006993 ORTHO05D008336 2.1e-24 116.3 79 98.7
Pp3c2_17900 Physcomitrium patens HOM05D006993 ORTHO05D008336 3.5e-24 115.5 102 52.9
Psat4g158880 Pisum sativum HOM05D006993 ORTHO05D008336 5.1e-23 111.7 105 61.0
Ca_23571_v3 Cicer arietinum L. HOM05D006993 ORTHO05D008336 2.0e-19 99.8 105 64.8
CBR_g51823 Chara braunii HOM05D006993 ORTHO05D008336 6.6e-15 84.7 72 52.8
Gohir.D11G152300 Gossypium hirsutum HOM05D006993 ORTHO05D008336 2.8e-13 79.3 95 50.5
THA.LOC104815380 Tarenaya hassleriana HOM05D006993 ORTHO05D008336 1.6e-08 63.5 36 80.6
Ca_23582_v3 Cicer arietinum L. HOM05D000001 ORTHO05D000003 2.3e-07 59.7 39 69.2


User provided reference genes

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