Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa010610 Carpinus fangiana HOM05D001021 ORTHO05D043728 1.8e-23 111.7 56 100.0
Aa31LG3G15680 Aethionema arabicum HOM05D001021 ORTHO05D000894 2.9e-08 61.2 35 82.9
Ciclev10008274m.g Citrus clementina HOM05D001021 ORTHO05D000894 2.9e-08 61.2 35 85.7
Haze_03543 Corylus avellana HOM05D001021 ORTHO05D043728 3.7e-08 60.8 36 86.1
THA.LOC104808487 Tarenaya hassleriana HOM05D001021 ORTHO05D000894 3.7e-08 60.8 35 82.9
Cfa013348 Carpinus fangiana HOM05D001021 ORTHO05D000894 4.9e-08 60.5 35 82.9
Haze_21863 Corylus avellana HOM05D001021 ORTHO05D000894 4.9e-08 60.5 35 82.9
CiPaw.08G024100 Carya illinoinensis HOM05D001021 ORTHO05D000894 6.4e-08 60.1 35 82.9
QL12p026611 Quercus lobata HOM05D001021 ORTHO05D000894 6.4e-08 60.1 35 82.9
Atru.chr7.2152 Acer truncatum HOM05D001021 ORTHO05D000894 8.3e-08 59.7 35 82.9
A03p05070 Brassica napus HOM05D001021 ORTHO05D000894 8.3e-08 59.7 35 80.0
C03p05800 Brassica napus HOM05D001021 ORTHO05D000894 8.3e-08 59.7 35 80.0
BolC3t13093H Brassica oleracea HOM05D001021 ORTHO05D000894 8.3e-08 59.7 35 80.0
BraA03t09841Z Brassica rapa HOM05D001021 ORTHO05D000894 8.3e-08 59.7 35 80.0
Eucgr.C02894 Eucalyptus grandis HOM05D001021 ORTHO05D000894 8.3e-08 59.7 35 82.9
Thhalv10013515m.g Eutrema salsugineum HOM05D001021 ORTHO05D000894 8.3e-08 59.7 35 80.0
PGR044G0269 Punica granatum HOM05D001021 ORTHO05D000894 8.3e-08 59.7 35 82.9
Sp6g32080 Schrenkiella parvula HOM05D001021 ORTHO05D000894 8.3e-08 59.7 35 80.0
AL6G22190 Arabidopsis lyrata HOM05D001021 ORTHO05D000894 1.1e-07 59.3 35 80.0
AT5G11520 Arabidopsis thaliana HOM05D001021 ORTHO05D000894 1.1e-07 59.3 35 80.0
Carub.0006s0998 Capsella rubella HOM05D001021 ORTHO05D000894 1.1e-07 59.3 35 80.0
CiPaw.07G206600 Carya illinoinensis HOM05D001021 ORTHO05D000894 1.4e-07 58.9 35 80.0
CAN.G21.32 Capsicum annuum HOM05D001021 ORTHO05D000894 1.9e-07 58.5 35 80.0
Cpa.g.sc78.75 Carica papaya HOM05D001021 ORTHO05D000894 1.9e-07 58.5 35 80.0
SalBow8G3685 Salvia bowleyana HOM05D001021 ORTHO05D000894 2.4e-07 58.2 35 80.0
BcaNung01930 Brassica carinata HOM05D001021 ORTHO05D000894 3.2e-07 57.8 35 80.0
Duzib150G0063 Durio zibethinus HOM05D001021 ORTHO05D000894 3.2e-07 57.8 35 80.0
Thecc.09G040700 Theobroma cacao HOM05D001021 ORTHO05D000894 3.2e-07 57.8 35 80.0
TWI63G1646 Tripterygium wilfordii HOM05D001021 ORTHO05D000894 3.2e-07 57.8 35 82.9
BcaB01g05478 Brassica carinata HOM05D001021 ORTHO05D000894 4.1e-07 57.4 35 77.1
CARHR193350 Cardamine hirsuta HOM05D001021 ORTHO05D000894 4.1e-07 57.4 43 67.4
Prupe.1G451900 Prunus persica HOM05D001021 ORTHO05D000894 4.1e-07 57.4 35 80.0
unitig_0.g2735 Utricularia gibba HOM05D001021 ORTHO05D000894 4.1e-07 57.4 35 80.0
BcaB05g23390 Brassica carinata HOM05D001021 ORTHO05D000894 5.4e-07 57.0 43 69.8
BcaC04g24220 Brassica carinata HOM05D001021 ORTHO05D000894 5.4e-07 57.0 43 69.8
A02p05640 Brassica napus HOM05D001021 ORTHO05D000894 5.4e-07 57.0 43 69.8
A10p20150 Brassica napus HOM05D001021 ORTHO05D000894 5.4e-07 57.0 43 69.8
BNapus_Darmor_BZH_scaffold_38p02310 Brassica napus HOM05D001021 ORTHO05D000894 5.4e-07 57.0 43 69.8
C09p56700 Brassica napus HOM05D001021 ORTHO05D000894 5.4e-07 57.0 43 69.8
BolC9t58527H Brassica oleracea HOM05D001021 ORTHO05D000894 5.4e-07 57.0 43 69.8
BraA02t05516Z Brassica rapa HOM05D001021 ORTHO05D000894 5.4e-07 57.0 43 69.8
BraA10t44088Z Brassica rapa HOM05D001021 ORTHO05D000894 5.4e-07 57.0 43 69.8
CARHR201700 Cardamine hirsuta HOM05D001021 ORTHO05D000894 5.4e-07 57.0 35 77.1
Thhalv10013703m.g Eutrema salsugineum HOM05D001021 ORTHO05D000894 5.4e-07 57.0 43 69.8
Gohir.D07G027100 Gossypium hirsutum HOM05D001021 ORTHO05D000894 5.4e-07 57.0 35 77.1
Gorai.001G028100 Gossypium raimondii HOM05D001021 ORTHO05D000894 5.4e-07 57.0 35 77.1
Lj7A706T42 Lonicera japonica HOM05D001021 ORTHO05D000894 5.4e-07 57.0 35 80.0
Manes.03G061000 Manihot esculenta HOM05D001021 ORTHO05D000894 5.4e-07 57.0 35 77.1
PGSC0003DMG400010840 Solanum tuberosum HOM05D001021 ORTHO05D000894 5.4e-07 57.0 35 77.1
TWI32G1188 Tripterygium wilfordii HOM05D001021 ORTHO05D000894 5.4e-07 57.0 35 80.0
AT5G19550 Arabidopsis thaliana HOM05D001021 ORTHO05D000894 7.0e-07 56.6 43 67.4
COL.COLO4_18689 Corchorus olitorius HOM05D001021 ORTHO05D000894 7.0e-07 56.6 35 77.1
MSTRG.14014 Avicennia marina HOM05D001021 ORTHO05D000894 9.2e-07 56.2 35 77.1
Carub.0006s1790 Capsella rubella HOM05D001021 ORTHO05D000894 9.2e-07 56.2 43 67.4
FvH4_2g36030 Fragaria vesca HOM05D001021 ORTHO05D000894 9.2e-07 56.2 35 77.1
FAN15G0140 Fragaria x ananassa HOM05D001021 ORTHO05D000894 9.2e-07 56.2 35 77.1
FAN20G2878 Fragaria x ananassa HOM05D001021 ORTHO05D000894 9.2e-07 56.2 35 77.1
FAN27G2059 Fragaria x ananassa HOM05D001021 ORTHO05D000894 9.2e-07 56.2 35 77.1
RcHm_v2.0_Chr6g0305821 Rosa chinensis HOM05D001021 ORTHO05D000894 9.2e-07 56.2 35 77.1
Actinidia13313 Actinidia chinensis HOM05D001021 ORTHO05D000894 1.2e-06 55.8 35 77.1
Actinidia31227 Actinidia chinensis HOM05D001021 ORTHO05D000894 1.2e-06 55.8 35 77.1
Migut.E01514 Erythranthe guttata HOM05D001021 ORTHO05D000894 1.2e-06 55.8 35 77.1
HanXRQChr08g0236121 Helianthus annuus HOM05D001021 ORTHO05D000894 1.2e-06 55.8 35 77.1
Lsat_1_v5_gn_5_33281 Lactuca sativa HOM05D001021 ORTHO05D000894 1.2e-06 55.8 35 74.3
Oeu011270.1 Olea europaea HOM05D001021 ORTHO05D000894 1.2e-06 55.8 35 77.1
GSVIVG01035662001 Vitis vinifera HOM05D001021 ORTHO05D000894 1.2e-06 55.8 35 77.1
CANSAT25G1257 Cannabis sativa HOM05D001021 ORTHO05D000894 1.6e-06 55.5 35 80.0
Gohir.A07G023500 Gossypium hirsutum HOM05D001021 ORTHO05D000894 1.6e-06 55.5 35 74.3
Peaxi162Scf00523g00015 Petunia axillaris HOM05D001021 ORTHO05D000894 1.6e-06 55.5 35 74.3
Sp6g24830 Schrenkiella parvula HOM05D001021 ORTHO05D000894 1.6e-06 55.5 43 67.4
Solyc08g068330.3 Solanum lycopersicum HOM05D001021 ORTHO05D000894 1.6e-06 55.5 35 74.3
Sopen08g022180 Solanum pennellii HOM05D001021 ORTHO05D000894 1.6e-06 55.5 35 74.3
THA.LOC104799079 Tarenaya hassleriana HOM05D001021 ORTHO05D000894 1.6e-06 55.5 43 69.8
AL6G31060 Arabidopsis lyrata HOM05D001021 ORTHO05D000894 2.1e-06 55.1 43 67.4
BolC2t06462H Brassica oleracea HOM05D001021 ORTHO05D000894 2.1e-06 55.1 35 77.1
Cc08_g09040 Coffea canephora HOM05D001021 ORTHO05D000894 2.1e-06 55.1 35 77.1
MD15G1096900 Malus domestica HOM05D001021 ORTHO05D000894 2.1e-06 55.1 35 77.1
Dinv14232 Davidia involucrata HOM05D001021 ORTHO05D000894 2.7e-06 54.7 35 74.3
Lj7C653T15 Lonicera japonica HOM05D001021 ORTHO05D000894 2.7e-06 54.7 35 71.4
Sabra18G0070300 Salix brachista HOM05D001021 ORTHO05D000894 2.7e-06 54.7 35 74.3
Sed0005655 Sechium edule HOM05D001021 ORTHO05D000894 2.7e-06 54.7 35 77.1
Sed0006050 Sechium edule HOM05D001021 ORTHO05D000894 2.7e-06 54.7 35 77.1
Sc09g0009120 Simmondsia chinensis HOM05D001021 ORTHO05D000894 2.7e-06 54.7 35 71.4
BcaC03g13686 Brassica carinata HOM05D001021 ORTHO05D000894 3.5e-06 54.3 42 69.0
BolC2t06965H Brassica oleracea HOM05D001021 ORTHO05D000894 3.5e-06 54.3 42 69.0
Ciclev10008489m.g Citrus clementina HOM05D001021 ORTHO05D000894 3.5e-06 54.3 35 74.3
Dinv36650 Davidia involucrata HOM05D001021 ORTHO05D000894 3.5e-06 54.3 35 68.6
Eucgr.C01585 Eucalyptus grandis HOM05D001021 ORTHO05D000894 3.5e-06 54.3 35 74.3
Potri.018G082500 Populus trichocarpa HOM05D001021 ORTHO05D000894 3.5e-06 54.3 35 74.3
SGA_v2.0_scaffold163G38083 Striga asiatica HOM05D004668 ORTHO05D006460 3.5e-06 54.3 36 72.2
TPR.G1391 Trifolium pratense HOM05D001021 ORTHO05D000894 3.5e-06 54.3 43 69.8
GSVIVG01015367001 Vitis vinifera HOM05D001021 ORTHO05D000894 3.5e-06 54.3 35 77.1
Cc06_g09870 Coffea canephora HOM05D001021 ORTHO05D000894 4.6e-06 53.9 35 74.3
MD08G1117500 Malus domestica HOM05D001021 ORTHO05D000894 4.6e-06 53.9 35 74.3
Gohir.D06G062600 Gossypium hirsutum HOM05D001021 ORTHO05D000894 6.0e-06 53.5 35 74.3
Gorai.010G072900 Gossypium raimondii HOM05D001021 ORTHO05D000894 6.0e-06 53.5 35 74.3
Medtr3g110065 Medicago truncatula HOM05D001021 ORTHO05D000894 6.0e-06 53.5 43 67.4
Rhsim02G0181400 Rhododendron simsii HOM05D001021 ORTHO05D000894 6.0e-06 53.5 35 71.4
Sc08g0007600 Simmondsia chinensis HOM05D001021 ORTHO05D000894 6.0e-06 53.5 35 74.3
TWI34G0737 Tripterygium wilfordii HOM05D001021 ORTHO05D000894 6.0e-06 53.5 35 74.3
vmacro11075 Vaccinium macrocarpon HOM05D001021 ORTHO05D000894 6.0e-06 53.5 35 71.4
MSTRG.26359 Avicennia marina HOM05D001021 ORTHO05D000894 7.8e-06 53.1 35 71.4
CSS0019452 Camellia sinensis var. sinensis HOM05D001021 ORTHO05D000894 7.8e-06 53.1 35 74.3
MELO3C003577.2 Cucumis melo HOM05D001021 ORTHO05D000894 7.8e-06 53.1 35 74.3
CsaV3_3G047470 Cucumis sativus L. HOM05D001021 ORTHO05D000894 7.8e-06 53.1 35 74.3
ECA246G4180 Erigeron canadensis HOM05D001021 ORTHO05D000894 7.8e-06 53.1 35 74.3
Glyma.04G080700 Glycine max HOM05D001021 ORTHO05D000894 7.8e-06 53.1 35 74.3
Glyma.06G082400 Glycine max HOM05D001021 ORTHO05D000894 7.8e-06 53.1 35 74.3
Hund09217 Selenicereus undatus HOM05D001021 ORTHO05D000894 7.8e-06 53.1 35 71.4


User provided reference genes

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