Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa010586 Carpinus fangiana HOM05D000083 ORTHO05D000196 9.0e-35 150.2 107 100.0
Cfa010588 Carpinus fangiana HOM05D000083 ORTHO05D000196 1.4e-32 142.9 108 97.2
Cfa010589 Carpinus fangiana HOM05D000083 ORTHO05D000196 1.9e-29 132.5 108 93.5
Cfa010585 Carpinus fangiana HOM05D000083 ORTHO05D000196 1.8e-27 125.9 72 90.3
Cfa010583 Carpinus fangiana HOM05D000083 ORTHO05D000196 9.0e-27 123.6 75 82.7
Haze_03515 Corylus avellana HOM05D000083 ORTHO05D000196 1.3e-25 119.8 108 84.3
Haze_03527 Corylus avellana HOM05D000083 ORTHO05D000196 1.7e-25 119.4 75 80.0
Haze_03530 Corylus avellana HOM05D000083 ORTHO05D000196 1.7e-25 119.4 75 80.0
Haze_03519 Corylus avellana HOM05D000083 ORTHO05D000196 8.4e-25 117.1 73 76.7
Haze_07954 Corylus avellana HOM05D025838 ORTHO05D165632 2.1e-23 112.5 75 76.0
Haze_24324 Corylus avellana HOM05D000083 ORTHO05D000196 1.5e-13 79.7 71 62.0
Cfa007268 Carpinus fangiana HOM05D000083 ORTHO05D000196 2.5e-13 79.0 57 73.7
Haze_02186 Corylus avellana HOM05D000083 ORTHO05D000196 2.1e-12 75.9 69 58.0
Cfa005615 Carpinus fangiana HOM05D000083 ORTHO05D000196 6.9e-11 70.9 75 52.0
Cfa005208 Carpinus fangiana HOM05D000180 ORTHO05D000099 8.4e-09 63.9 57 59.6
Thecc.01G057700 Theobroma cacao HOM05D000083 ORTHO05D000196 1.9e-08 62.8 62 48.4
Cfa010481 Carpinus fangiana HOM05D000083 ORTHO05D000196 2.5e-08 62.4 40 65.0
QL02p099954 Quercus lobata HOM05D000083 ORTHO05D000196 2.5e-08 62.4 36 72.2
Gorai.011G106000 Gossypium raimondii HOM05D000083 ORTHO05D000196 3.2e-08 62.0 46 56.5
Duzib138G1440 Durio zibethinus HOM05D000083 ORTHO05D000196 5.5e-08 61.2 45 64.4
QL02p099948 Quercus lobata HOM05D000083 ORTHO05D000196 5.5e-08 61.2 36 69.4
ClCG01G016870 Citrullus lanatus HOM05D000083 ORTHO05D000196 7.1e-08 60.8 54 50.0
Atru.chr1.3141 Acer truncatum HOM05D000083 ORTHO05D000196 9.3e-08 60.5 45 60.0
PSO675G7703 Papaver somniferum HOM05D000083 ORTHO05D000196 9.3e-08 60.5 45 62.2
arahy.Tifrunner.gnm1.ann1.SNPS34 Arachis hypogaea HOM05D000083 ORTHO05D000196 1.2e-07 60.1 34 73.5
Haze_10251 Corylus avellana HOM05D000083 ORTHO05D000196 1.6e-07 59.7 32 75.0
Gohir.D10G096700 Gossypium hirsutum HOM05D000083 ORTHO05D000196 2.7e-07 58.9 46 54.3
arahy.Tifrunner.gnm1.ann1.4D3EC8 Arachis hypogaea HOM05D000083 ORTHO05D000196 3.5e-07 58.5 32 75.0
MSTRG.23741 Avicennia marina HOM05D000083 ORTHO05D000196 3.5e-07 58.5 32 71.9
PSO170G0947 Papaver somniferum HOM05D000083 ORTHO05D000196 3.5e-07 58.5 56 51.8
arahy.Tifrunner.gnm1.ann1.M6G4Q4 Arachis hypogaea HOM05D000083 ORTHO05D000196 4.6e-07 58.2 36 63.9
Migut.H00424 Erythranthe guttata HOM05D000083 ORTHO05D000196 4.6e-07 58.2 32 75.0
PGR004G2645 Punica granatum HOM05D000083 ORTHO05D000196 4.6e-07 58.2 32 71.9
Duzib192G0826 Durio zibethinus HOM05D000083 ORTHO05D000196 6.0e-07 57.8 66 45.5
Duzib264G0222 Durio zibethinus HOM05D000083 ORTHO05D000196 6.0e-07 57.8 43 60.5
Lj2g0020617 Lotus japonicus HOM05D000083 ORTHO05D000196 6.0e-07 57.8 34 64.7
Nitab4.5_0003298g0060 Nicotiana tabacum HOM05D000083 ORTHO05D000196 6.0e-07 57.8 43 53.5
PSO210G6607 Papaver somniferum HOM05D000083 ORTHO05D000196 6.0e-07 57.8 55 52.7
Phvul.002G186600 Phaseolus vulgaris HOM05D000083 ORTHO05D000196 6.0e-07 57.8 50 52.0
Thecc.07G129800 Theobroma cacao HOM05D000083 ORTHO05D000196 6.0e-07 57.8 33 69.7
TAR625G0625 Trochodendron aralioides HOM05D000083 ORTHO05D000196 6.0e-07 57.8 42 54.8
Aqoxy6G01298 Aquilegia oxysepala HOM05D000083 ORTHO05D000196 7.9e-07 57.4 45 53.3
Duzib133G1428 Durio zibethinus HOM05D000083 ORTHO05D000196 7.9e-07 57.4 33 69.7
Lalb_Chr00c02g0404021 Lupinus albus HOM05D000083 ORTHO05D000196 7.9e-07 57.4 32 71.9
TWI73G0219 Tripterygium wilfordii HOM05D000083 ORTHO05D000196 7.9e-07 57.4 32 71.9
BcaNung02523 Brassica carinata HOM05D000083 ORTHO05D000196 1.0e-06 57.0 32 71.9
A01p01810 Brassica napus HOM05D000083 ORTHO05D000196 1.0e-06 57.0 32 71.9
C01p01950 Brassica napus HOM05D000083 ORTHO05D000196 1.0e-06 57.0 32 71.9
BolC1t00189H Brassica oleracea HOM05D000083 ORTHO05D000196 1.0e-06 57.0 32 71.9
BraA01t00171Z Brassica rapa HOM05D000083 ORTHO05D000196 1.0e-06 57.0 32 71.9
Duzib138G1107 Durio zibethinus HOM05D000083 ORTHO05D000196 1.0e-06 57.0 33 69.7
Solyc02g064980.1 Solanum lycopersicum HOM05D000083 ORTHO05D000196 1.0e-06 57.0 37 59.5
TPR.G7117 Trifolium pratense HOM05D000083 ORTHO05D000196 1.0e-06 57.0 40 57.5
TAR381G1032 Trochodendron aralioides HOM05D000083 ORTHO05D000196 1.0e-06 57.0 34 64.7
HPP92_021555 Vanilla planifolia HOM05D000083 ORTHO05D000196 1.0e-06 57.0 55 52.7
MELO3C020859.2 Cucumis melo HOM05D000083 ORTHO05D000196 1.3e-06 56.6 33 66.7
Duzib133G0441 Durio zibethinus HOM05D000083 ORTHO05D000196 1.3e-06 56.6 43 60.5
HanXRQChr14g0449081 Helianthus annuus HOM05D000083 ORTHO05D000196 1.3e-06 56.6 32 68.8
Thecc.06G015000 Theobroma cacao HOM05D000083 ORTHO05D000196 1.3e-06 56.6 80 40.0
GSVIVG01022117001 Vitis vinifera HOM05D000083 ORTHO05D000196 1.3e-06 56.6 54 48.1
Lj5P308T23 Lonicera japonica HOM05D000083 ORTHO05D000196 1.8e-06 56.2 32 75.0
Thecc.08G174800 Theobroma cacao HOM05D000083 ORTHO05D000196 1.8e-06 56.2 33 69.7
Atru.chr5.2724 Acer truncatum HOM05D000083 ORTHO05D000196 2.3e-06 55.8 33 66.7
Aqoxy5G01211 Aquilegia oxysepala HOM05D000083 ORTHO05D000196 2.3e-06 55.8 48 56.2
Gohir.A10G091500 Gossypium hirsutum HOM05D000083 ORTHO05D000196 2.3e-06 55.8 46 52.2
Lj5C309T9 Lonicera japonica HOM05D000083 ORTHO05D000196 2.3e-06 55.8 32 71.9
Rhsim08G0099800 Rhododendron simsii HOM05D000083 ORTHO05D000196 2.3e-06 55.8 39 59.0
Thecc.04G108600 Theobroma cacao HOM05D000083 ORTHO05D000196 2.3e-06 55.8 33 66.7
TPR.G19076 Trifolium pratense HOM05D000083 ORTHO05D000196 2.3e-06 55.8 36 61.1
HPP92_024517 Vanilla planifolia HOM05D000083 ORTHO05D000196 2.3e-06 55.8 41 56.1
HPP92_024589 Vanilla planifolia HOM05D000083 ORTHO05D030684 2.3e-06 55.8 41 56.1
MSTRG.3429 Avicennia marina HOM05D000083 ORTHO05D000196 3.0e-06 55.5 45 53.3
HanXRQChr15g0490411 Helianthus annuus HOM05D000083 ORTHO05D000196 3.0e-06 55.5 32 71.9
Lj5C309T10 Lonicera japonica HOM05D000083 ORTHO05D000196 3.0e-06 55.5 32 71.9
Medtr0189s0010 Medicago truncatula HOM05D000083 ORTHO05D000196 3.0e-06 55.5 36 61.1
Psat4g086600 Pisum sativum HOM05D000083 ORTHO05D000196 3.0e-06 55.5 36 61.1
Potri.007G044800 Populus trichocarpa HOM05D000083 ORTHO05D000196 3.0e-06 55.5 34 61.8
Sopen02g015110 Solanum pennellii HOM05D000083 ORTHO05D000196 3.0e-06 55.5 32 65.6
Aqoxy6G01295 Aquilegia oxysepala HOM05D000083 ORTHO05D000196 3.9e-06 55.1 45 48.9
A01p24210 Brassica napus HOM05D000083 ORTHO05D000196 3.9e-06 55.1 32 68.8
Ca_24762_v3 Cicer arietinum L. HOM05D000083 ORTHO05D000196 3.9e-06 55.1 36 58.3
CsaV3_6G043320 Cucumis sativus L. HOM05D000083 ORTHO05D000196 3.9e-06 55.1 54 44.4
Glyma.17G173000 Glycine max HOM05D000083 ORTHO05D000196 3.9e-06 55.1 36 58.3
Medtr0154s0020 Medicago truncatula HOM05D000083 ORTHO05D000196 3.9e-06 55.1 34 64.7
Nitab4.5_0000604g0140 Nicotiana tabacum HOM05D000083 ORTHO05D000196 3.9e-06 55.1 34 61.8
PSO541G2633 Papaver somniferum HOM05D000083 ORTHO05D000196 3.9e-06 55.1 32 75.0
Phvul.002G018100 Phaseolus vulgaris HOM05D000083 ORTHO05D000196 3.9e-06 55.1 32 65.6
PGSC0003DMG400025472 Solanum tuberosum HOM05D000083 ORTHO05D000196 3.9e-06 55.1 34 61.8
CSS0024866 Camellia sinensis var. sinensis HOM05D000083 ORTHO05D000196 5.1e-06 54.7 34 61.8
CAN.G370.55 Capsicum annuum HOM05D000083 ORTHO05D000196 5.1e-06 54.7 36 58.3
CsaV3_2G016490 Cucumis sativus L. HOM05D000083 ORTHO05D000196 5.1e-06 54.7 32 65.6
DCAR_010885 Daucus carota HOM05D000083 ORTHO05D000196 5.1e-06 54.7 32 68.8
Duzib138G1371 Durio zibethinus HOM05D000083 ORTHO05D000196 5.1e-06 54.7 38 57.9
Gohir.D11G199800 Gossypium hirsutum HOM05D000083 ORTHO05D000196 5.1e-06 54.7 36 58.3
Lsat_1_v5_gn_3_89220 Lactuca sativa HOM05D000083 ORTHO05D000196 5.1e-06 54.7 36 61.1
MBI16_g10340_MAGBIO Magnolia biondii HOM05D000083 ORTHO05D000196 5.1e-06 54.7 34 64.7
Medtr5g017110 Medicago truncatula HOM05D000083 ORTHO05D000196 5.1e-06 54.7 32 62.5
Nitab4.5_0002263g0060 Nicotiana tabacum HOM05D000083 ORTHO05D000196 5.1e-06 54.7 32 65.6
Oeu062446.1 Olea europaea HOM05D000083 ORTHO05D000196 5.1e-06 54.7 32 68.8
Sabra07G0039700 Salix brachista HOM05D000083 ORTHO05D000196 5.1e-06 54.7 34 61.8
unitig_899.g14669 Utricularia gibba HOM05D000083 ORTHO05D000196 5.1e-06 54.7 47 53.2
BcaB01g00627 Brassica carinata HOM05D000083 ORTHO05D000196 6.7e-06 54.3 32 68.8
CSS0034980 Camellia sinensis var. sinensis HOM05D000083 ORTHO05D000196 6.7e-06 54.3 34 61.8
Cfa004658 Carpinus fangiana HOM05D000083 ORTHO05D000196 6.7e-06 54.3 71 40.8
CDE02G0662 Ceratophyllum demersum HOM05D000083 ORTHO05D000196 6.7e-06 54.3 36 58.3
CDE08G0853 Ceratophyllum demersum HOM05D000083 ORTHO05D000196 6.7e-06 54.3 36 58.3
MELO3C007565.2 Cucumis melo HOM05D000083 ORTHO05D000196 6.7e-06 54.3 54 44.4
DCAR_025740 Daucus carota HOM05D000083 ORTHO05D000196 6.7e-06 54.3 32 68.8
Glyma.05G094400 Glycine max HOM05D000083 ORTHO05D000196 6.7e-06 54.3 39 53.8
Gorai.007G213900 Gossypium raimondii HOM05D000083 ORTHO05D000196 6.7e-06 54.3 33 63.6
Lsat_1_v5_gn_2_84800 Lactuca sativa HOM05D000083 ORTHO05D000196 6.7e-06 54.3 32 65.6
Lj2g0022125 Lotus japonicus HOM05D000083 ORTHO05D000196 6.7e-06 54.3 38 57.9
MBI07_g42666_MAGBIO Magnolia biondii HOM05D000083 ORTHO05D000196 6.7e-06 54.3 32 68.8
Nitab4.5_0003519g0060 Nicotiana tabacum HOM05D000083 ORTHO05D000196 6.7e-06 54.3 34 61.8
Nitab4.5_0005375g0040 Nicotiana tabacum HOM05D000083 ORTHO05D000196 6.7e-06 54.3 36 55.6
Oeu031963.1 Olea europaea HOM05D000083 ORTHO05D000196 6.7e-06 54.3 36 55.6
Peaxi162Scf00450g00028 Petunia axillaris HOM05D000083 ORTHO05D000196 6.7e-06 54.3 45 48.9
Prupe.7G132100 Prunus persica HOM05D000083 ORTHO05D000196 6.7e-06 54.3 33 66.7
Sp5g11870 Schrenkiella parvula HOM05D000083 ORTHO05D000196 6.7e-06 54.3 32 68.8
Solyc02g090990.1 Solanum lycopersicum HOM05D000083 ORTHO05D000196 6.7e-06 54.3 50 48.0
Sopen02g035640 Solanum pennellii HOM05D000083 ORTHO05D000196 6.7e-06 54.3 50 48.0
unitig_736.g22668 Utricularia gibba HOM05D000083 ORTHO05D000196 6.7e-06 54.3 47 51.1
Atru.chr3.4174 Acer truncatum HOM05D000083 ORTHO05D000196 8.7e-06 53.9 41 51.2
Atru.chr3.4182 Acer truncatum HOM05D000083 ORTHO05D000196 8.7e-06 53.9 41 51.2
BcaNung05426 Brassica carinata HOM05D000083 ORTHO05D000196 8.7e-06 53.9 32 65.6
A03p14270 Brassica napus HOM05D000083 ORTHO05D000196 8.7e-06 53.9 36 61.1
BraA03t10724Z Brassica rapa HOM05D000083 ORTHO05D000196 8.7e-06 53.9 36 61.1
CAN.G165.15 Capsicum annuum HOM05D000083 ORTHO05D000196 8.7e-06 53.9 34 58.8
Ca_22158_v3 Cicer arietinum L. HOM05D000083 ORTHO05D000196 8.7e-06 53.9 34 61.8
ECA232G4789 Erigeron canadensis HOM05D000083 ORTHO05D000196 8.7e-06 53.9 32 65.6
Thhalv10027234m.g Eutrema salsugineum HOM05D000083 ORTHO05D000196 8.7e-06 53.9 51 49.0
Hma1.2p1_0323F.1_g125240 Hydrangea macrophylla HOM05D000083 ORTHO05D000196 8.7e-06 53.9 54 46.3
Lj5A307T30 Lonicera japonica HOM05D000083 ORTHO05D000196 8.7e-06 53.9 32 68.8
Lj5C307T1 Lonicera japonica HOM05D000083 ORTHO05D000196 8.7e-06 53.9 32 68.8
Lj5C307T3 Lonicera japonica HOM05D000083 ORTHO05D000196 8.7e-06 53.9 32 68.8
Nitab4.5_0003298g0070 Nicotiana tabacum HOM05D000083 ORTHO05D000196 8.7e-06 53.9 32 65.6
Oeu014833.1 Olea europaea HOM05D000083 ORTHO05D000196 8.7e-06 53.9 36 58.3
Psat4g086560 Pisum sativum HOM05D000083 ORTHO05D000196 8.7e-06 53.9 34 61.8
Sabra05G0111500 Salix brachista HOM05D000083 ORTHO05D000196 8.7e-06 53.9 34 61.8
Sp7g34810 Schrenkiella parvula HOM05D000083 ORTHO05D000196 8.7e-06 53.9 32 65.6
Sed0008297 Sechium edule HOM05D000083 ORTHO05D000196 8.7e-06 53.9 34 58.8
SGA_v2.0_scaffold25G10856 Striga asiatica HOM05D000083 ORTHO05D000196 8.7e-06 53.9 32 68.8
THA.LOC104807587 Tarenaya hassleriana HOM05D000083 ORTHO05D000196 8.7e-06 53.9 36 61.1


User provided reference genes

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