Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa010576 Carpinus fangiana HOM05D006236 ORTHO05D003486 5.3e-283 977.2 578 100.0
Haze_03510 Corylus avellana HOM05D006236 ORTHO05D003486 1.6e-226 789.6 585 85.6
QL09p032233 Quercus lobata HOM05D006236 ORTHO05D003486 5.8e-88 329.3 644 37.9
CiPaw.03G184300 Carya illinoinensis HOM05D006236 ORTHO05D003486 1.0e-47 195.7 645 29.1
Haze_13715 Corylus avellana HOM05D000160 ORTHO05D010424 2.8e-34 151.0 99 76.8
Haze_13138 Corylus avellana HOM05D006236 ORTHO05D003486 4.5e-32 143.7 215 47.9
RcHm_v2.0_Chr6g0296811 Rosa chinensis HOM05D006236 ORTHO05D003486 7.7e-32 142.9 535 29.3
Dinv14700 Davidia involucrata HOM05D006236 ORTHO05D003486 2.9e-31 141.0 612 28.8
Dinv27264 Davidia involucrata HOM05D006236 ORTHO05D003486 6.1e-29 133.3 266 32.3
FAN15G3020 Fragaria x ananassa HOM05D006236 ORTHO05D003486 4.0e-28 130.6 548 27.2
Potri.002G077500 Populus trichocarpa HOM05D006236 ORTHO05D003486 1.2e-27 129.0 601 23.6
GSVIVG01008800001 Vitis vinifera HOM05D006236 ORTHO05D003486 4.8e-26 123.6 237 35.0
Prupe.1G488800 Prunus persica HOM05D006236 ORTHO05D003486 6.3e-26 123.2 578 28.0
FAN20G3074 Fragaria x ananassa HOM05D006236 ORTHO05D003486 2.4e-25 121.3 546 27.1
FAN24G2475 Fragaria x ananassa HOM05D006236 ORTHO05D003486 4.1e-25 120.6 615 26.5
Ciclev10000428m.g Citrus clementina HOM05D006236 ORTHO05D003486 5.4e-25 120.2 248 32.3
FAN27G0089 Fragaria x ananassa HOM05D006236 ORTHO05D003486 9.1e-25 119.4 548 27.0
FvH4_2g27990 Fragaria vesca HOM05D006236 ORTHO05D003486 1.2e-24 119.0 616 26.6
TAR625G0695 Trochodendron aralioides HOM05D006236 ORTHO05D003486 5.9e-24 116.7 254 33.1
Atru.chr13.1589 Acer truncatum HOM05D006236 ORTHO05D003486 7.7e-24 116.3 561 24.6
Duzib093G1452 Durio zibethinus HOM05D006236 ORTHO05D003486 1.1e-22 112.5 474 25.7
Manes.02G169100 Manihot esculenta HOM05D006236 ORTHO05D003486 1.1e-22 112.5 228 32.0
MD15G1133200 Malus domestica HOM05D006236 ORTHO05D003486 1.6e-21 108.6 523 25.4
MD08G1159900 Malus domestica HOM05D006236 ORTHO05D003486 8.0e-21 106.3 539 26.3
MELO3C012710.2 Cucumis melo HOM05D006236 ORTHO05D003486 1.0e-20 105.9 228 31.6
COL.COLO4_33391 Corchorus olitorius HOM05D006236 ORTHO05D003486 6.8e-20 103.2 222 32.0
TWI60G0548 Tripterygium wilfordii HOM05D006236 ORTHO05D003486 2.0e-19 101.7 573 27.9
QL12p002389 Quercus lobata HOM05D006236 ORTHO05D003486 3.4e-19 100.9 88 55.7
ClCG09G021830 Citrullus lanatus HOM05D006236 ORTHO05D003486 2.2e-18 98.2 234 29.1
CsaV3_7G022170 Cucumis sativus L. HOM05D006236 ORTHO05D003486 2.2e-18 98.2 234 29.9
Thecc.08G133800 Theobroma cacao HOM05D006236 ORTHO05D003486 3.7e-18 97.4 564 27.1
SGA_v2.0_scaffold28G11968 Striga asiatica HOM05D006236 ORTHO05D003486 3.1e-17 94.4 105 46.7
Gorai.005G087400 Gossypium raimondii HOM05D006236 ORTHO05D003486 4.1e-17 94.0 222 29.3
CiPaw.11G076600 Carya illinoinensis HOM05D006236 ORTHO05D003486 1.6e-16 92.0 100 49.0
Sed0000792 Sechium edule HOM05D006236 ORTHO05D003486 2.0e-16 91.7 590 23.4
Gohir.D02G077800 Gossypium hirsutum HOM05D006236 ORTHO05D003486 3.5e-16 90.9 222 28.8
Aa31LG7G5540 Aethionema arabicum HOM05D012602 ORTHO05D003486 4.5e-16 90.5 231 29.9
Sabra02G0060900 Salix brachista HOM05D006236 ORTHO05D003486 4.5e-16 90.5 567 22.9
Sed0021928 Sechium edule HOM05D006236 ORTHO05D003486 1.3e-15 89.0 117 43.6
DCAR_028204 Daucus carota HOM05D006236 ORTHO05D003486 1.7e-15 88.6 101 41.6
Glyma.06G159000 Glycine max HOM05D006236 ORTHO05D003486 1.7e-15 88.6 92 43.5
Manes.18G083050 Manihot esculenta HOM05D006236 ORTHO05D003486 1.7e-15 88.6 106 41.5
Haze_03520 Corylus avellana HOM05D000160 ORTHO05D010424 6.6e-15 86.7 105 51.4
Oeu047174.1 Olea europaea HOM05D006236 ORTHO05D003486 6.6e-15 86.7 93 45.2
CANSAT78G2054 Cannabis sativa HOM05D006236 ORTHO05D003486 8.6e-15 86.3 108 48.1
Phvul.009G156700 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 1.9e-14 85.1 93 44.1
Sp5g32440 Schrenkiella parvula HOM05D009282 ORTHO05D003486 1.9e-14 85.1 227 30.8
Glyma.04G206551 Glycine max HOM05D006236 ORTHO05D003486 2.5e-14 84.7 86 45.3
Cfa012635 Carpinus fangiana HOM05D006236 ORTHO05D003486 3.3e-14 84.3 102 44.1
CANSAT78G1984 Cannabis sativa HOM05D006236 ORTHO05D003486 9.5e-14 82.8 113 43.4
PGR044G2319 Punica granatum HOM05D006236 ORTHO05D003486 9.5e-14 82.8 525 24.8
FAN15G0899 Fragaria x ananassa HOM05D006236 ORTHO05D003486 1.2e-13 82.4 557 23.2
AT1G77270 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 1.6e-13 82.0 257 28.0
Carub.0002s2415 Capsella rubella HOM05D009282 ORTHO05D003486 1.6e-13 82.0 108 44.4
Lalb_Chr08g0237871 Lupinus albus HOM05D006236 ORTHO05D003486 1.6e-13 82.0 98 40.8
Ca_12735_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 2.1e-13 81.6 101 41.6
Ca_12741_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 2.1e-13 81.6 101 41.6
Nitab4.5_0000205g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 2.1e-13 81.6 95 40.0
Cc00_g10350 Coffea canephora HOM05D006236 ORTHO05D003486 2.8e-13 81.3 241 25.3
Nn5g28446 Nelumbo nucifera HOM05D006236 ORTHO05D003486 2.8e-13 81.3 88 44.3
Oeu042695.1 Olea europaea HOM05D006236 ORTHO05D003486 2.8e-13 81.3 108 41.7
Medtr2g010820 Medicago truncatula HOM05D006236 ORTHO05D003486 3.6e-13 80.9 223 28.3
Psat0s1315g0200 Pisum sativum HOM05D006236 ORTHO05D003486 3.6e-13 80.9 225 28.9
RcHm_v2.0_Chr6g0296791 Rosa chinensis HOM05D006236 ORTHO05D003486 3.6e-13 80.9 230 27.4
Hund17351 Selenicereus undatus HOM05D031599 ORTHO05D003486 6.1e-13 80.1 92 44.6
VMungo1309G0219 Vigna mungo HOM05D006236 ORTHO05D003486 6.1e-13 80.1 91 42.9
AL1G34710 Arabidopsis lyrata HOM05D012602 ORTHO05D003486 8.0e-13 79.7 235 27.2
CARHR070750 Cardamine hirsuta HOM05D009282 ORTHO05D003486 1.0e-12 79.3 108 44.4
Migut.N03258 Erythranthe guttata HOM05D006236 ORTHO05D003486 1.0e-12 79.3 114 33.3
CANSAT78G0622 Cannabis sativa HOM05D006236 ORTHO05D003486 1.4e-12 79.0 108 42.6
Medtr3g097180 Medicago truncatula HOM05D006236 ORTHO05D003486 1.4e-12 79.0 90 41.1
TPR.G28699 Trifolium pratense HOM05D006236 ORTHO05D003486 1.4e-12 79.0 87 43.7
TPR.G32494 Trifolium pratense HOM05D006236 ORTHO05D003486 1.4e-12 79.0 103 40.8
TAR381G0115 Trochodendron aralioides HOM05D006236 ORTHO05D003486 1.4e-12 79.0 552 25.2
MSTRG.24177 Avicennia marina HOM05D006236 ORTHO05D003486 1.8e-12 78.6 97 41.2
BraA02t07136Z Brassica rapa HOM05D009282 ORTHO05D003486 1.8e-12 78.6 227 29.1
CAN.G1187.8 Capsicum annuum HOM05D012804 ORTHO05D003486 1.8e-12 78.6 92 42.4
CARHR021930 Cardamine hirsuta HOM05D012602 ORTHO05D003486 1.8e-12 78.6 238 27.3
FvH4_2g27980 Fragaria vesca HOM05D006236 ORTHO05D003486 2.3e-12 78.2 559 24.0
SalBow2G2217 Salvia bowleyana HOM05D006236 ORTHO05D003486 2.3e-12 78.2 101 43.6
Eucgr.E01002 Eucalyptus grandis HOM05D006236 ORTHO05D003486 4.0e-12 77.4 106 42.5
Thhalv10020550m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 4.0e-12 77.4 131 37.4
BcaC05g26073 Brassica carinata HOM05D012602 ORTHO05D003486 5.2e-12 77.0 112 37.5
A02p21190 Brassica napus HOM05D009282 ORTHO05D003486 5.2e-12 77.0 227 29.1
A06p17650 Brassica napus HOM05D012602 ORTHO05D003486 5.2e-12 77.0 112 37.5
BraA06t24857Z Brassica rapa HOM05D012602 ORTHO05D003486 5.2e-12 77.0 112 37.5
Medtr1g026790 Medicago truncatula HOM05D006236 ORTHO05D003486 5.2e-12 77.0 224 26.8
ATR0824G107 Amborella trichopoda HOM05D049392 ORTHO05D003486 6.8e-12 76.6 87 44.8
C02p34410 Brassica napus HOM05D009282 ORTHO05D003486 6.8e-12 76.6 110 41.8
Thhalv10007934m.g Eutrema salsugineum HOM05D012602 ORTHO05D003486 6.8e-12 76.6 231 28.1
Aa31LG4G7280 Aethionema arabicum HOM05D009282 ORTHO05D003486 8.9e-12 76.3 132 34.8
Carub.0001s2100 Capsella rubella HOM05D012602 ORTHO05D003486 8.9e-12 76.3 247 27.5
CDE02G3425 Ceratophyllum demersum HOM05D006236 ORTHO05D003486 1.2e-11 75.9 86 47.7
BcaB05g25029 Brassica carinata HOM05D009282 ORTHO05D003486 1.5e-11 75.5 110 41.8
C05p20560 Brassica napus HOM05D012602 ORTHO05D003486 2.0e-11 75.1 112 36.6
BolC5t30754H Brassica oleracea HOM05D012602 ORTHO05D003486 2.0e-11 75.1 112 36.6
Glyma.13G034700 Glycine max HOM05D006236 ORTHO05D003486 2.0e-11 75.1 100 45.0
AT1G21560 Arabidopsis thaliana HOM05D012602 ORTHO05D003486 2.6e-11 74.7 235 27.2
BcaC03g15725 Brassica carinata HOM05D009282 ORTHO05D003486 2.6e-11 74.7 110 40.9
BolC2t09471H Brassica oleracea HOM05D009282 ORTHO05D003486 2.6e-11 74.7 110 40.9
Peaxi162Scf00234g00718 Petunia axillaris HOM05D012804 ORTHO05D003486 2.6e-11 74.7 95 40.0
RcHm_v2.0_Chr6g0296801 Rosa chinensis HOM05D006236 ORTHO05D003486 3.4e-11 74.3 552 23.4
BcaC05g29566 Brassica carinata HOM05D009282 ORTHO05D003486 5.8e-11 73.6 225 26.2
Peaxi162Scf00062g00089 Petunia axillaris HOM05D012804 ORTHO05D003486 5.8e-11 73.6 94 39.4
Actinidia15208 Actinidia chinensis HOM05D006236 ORTHO05D003486 7.5e-11 73.2 562 21.5
AL2G37450 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 7.5e-11 73.2 108 42.6
AT3G07730 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 7.5e-11 73.2 115 40.0
Phvul.001G067500 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 9.8e-11 72.8 100 42.0
BolC5t34614H Brassica oleracea HOM05D009282 ORTHO05D003486 1.3e-10 72.4 107 40.2
Ca_17011_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 1.3e-10 72.4 86 41.9
Thhalv10018476m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 1.3e-10 72.4 98 42.9
Psat5g058120 Pisum sativum HOM05D006236 ORTHO05D003486 1.3e-10 72.4 105 37.1
AL3G19090 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 1.7e-10 72.0 129 35.7
Ciclev10003901m.g Citrus clementina HOM05D006236 ORTHO05D003486 1.7e-10 72.0 91 44.0
Nitab4.5_0011766g0010 Nicotiana tabacum HOM05D012804 ORTHO05D003486 1.7e-10 72.0 99 38.4
CARHR082440 Cardamine hirsuta HOM05D009282 ORTHO05D003486 2.2e-10 71.6 187 28.9
FAN02G2378 Fragaria x ananassa HOM05D006236 ORTHO05D003486 2.2e-10 71.6 555 22.2
Zm00001eb385310 Zea mays HOM05D006236 ORTHO05D003486 2.2e-10 71.6 88 43.2
PGSC0003DMG400004651 Solanum tuberosum HOM05D012804 ORTHO05D003486 2.9e-10 71.2 94 40.4
Solyc12g099920.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 3.7e-10 70.9 94 40.4
AT4G01170 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 4.9e-10 70.5 118 39.0
Carub.0003s0731 Capsella rubella HOM05D009282 ORTHO05D003486 4.9e-10 70.5 117 38.5
Nitab4.5_0001925g0210 Nicotiana tabacum HOM05D012804 ORTHO05D003486 4.9e-10 70.5 116 35.3
Nitab4.5_0003471g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 6.4e-10 70.1 117 32.5
CAN.G484.6 Capsicum annuum HOM05D012804 ORTHO05D003486 8.3e-10 69.7 112 34.8
Gohir.D02G077700 Gossypium hirsutum HOM05D006236 ORTHO05D003486 8.3e-10 69.7 91 41.8
Sopen12g034540 Solanum pennellii HOM05D012804 ORTHO05D003486 8.3e-10 69.7 94 40.4
THA.LOC104812078 Tarenaya hassleriana HOM05D006236 ORTHO05D003486 8.3e-10 69.7 257 25.7
C05p59590 Brassica napus HOM05D009282 ORTHO05D003486 1.1e-09 69.3 107 40.2
BolC1t05537H Brassica oleracea HOM05D009282 ORTHO05D003486 1.1e-09 69.3 108 39.8
Prupe.3G258400 Prunus persica HOM05D006236 ORTHO05D003486 1.1e-09 69.3 584 25.3
Lsat_1_v5_gn_6_110341 Lactuca sativa HOM05D006236 ORTHO05D003486 1.4e-09 68.9 105 41.9
HPP92_008975 Vanilla planifolia HOM05D006236 ORTHO05D003486 1.4e-09 68.9 88 34.1
A05p40490 Brassica napus HOM05D009282 ORTHO05D003486 1.9e-09 68.6 107 39.3
BraA05t22782Z Brassica rapa HOM05D009282 ORTHO05D003486 1.9e-09 68.6 107 39.3
Gohir.A02G070600 Gossypium hirsutum HOM05D006236 ORTHO05D003486 1.9e-09 68.6 209 26.3
CANSAT25G1833 Cannabis sativa HOM05D006236 ORTHO05D003486 3.2e-09 67.8 107 39.3
BraA01t04367Z Brassica rapa HOM05D009282 ORTHO05D003486 5.4e-09 67.0 108 38.9
Glyma.14G156000 Glycine max HOM05D006236 ORTHO05D003486 9.2e-09 66.2 100 42.0
Medtr1g026810 Medicago truncatula HOM05D006236 ORTHO05D003486 9.2e-09 66.2 89 41.6
Gorai.005G087300 Gossypium raimondii HOM05D006236 ORTHO05D003486 1.2e-08 65.9 91 38.5
SpUn0522_0010 Schrenkiella parvula HOM05D009282 ORTHO05D003486 1.2e-08 65.9 108 37.0
SMO147G0016 Selaginella moellendorffii HOM05D006236 ORTHO05D003486 1.2e-08 65.9 94 38.3
Os05g0423200 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 1.6e-08 65.5 88 40.9
Zm00001eb075330 Zea mays HOM05D006236 ORTHO05D003486 1.6e-08 65.5 94 37.2
Pp3c8_15980 Physcomitrium patens HOM05D006236 ORTHO05D003486 2.7e-08 64.7 86 39.5
TPR.G28151 Trifolium pratense HOM05D006236 ORTHO05D003486 3.5e-08 64.3 89 39.3
unitig_899.g14422 Utricularia gibba HOM05D006236 ORTHO05D003486 4.6e-08 63.9 99 32.3
BcaB04g21273 Brassica carinata HOM05D009282 ORTHO05D003486 6.0e-08 63.5 108 38.9
Lj7E351T3 Lonicera japonica HOM05D006236 ORTHO05D003486 7.8e-08 63.2 62 48.4
Cc10_g13660 Coffea canephora HOM05D006236 ORTHO05D003486 1.0e-07 62.8 82 39.0
Lj1g0007441 Lotus japonicus HOM05D006236 ORTHO05D003486 1.3e-07 62.4 94 38.3
arahy.Tifrunner.gnm1.ann1.E8STVK Arachis hypogaea HOM05D024686 ORTHO05D003486 1.7e-07 62.0 104 30.8
Os04g0539100 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 1.7e-07 62.0 99 34.3
Medtr1g026800 Medicago truncatula HOM05D006236 ORTHO05D003486 2.3e-07 61.6 100 38.0
Sp3g06660 Schrenkiella parvula HOM05D009282 ORTHO05D003486 2.3e-07 61.6 108 36.1
TPR.G24541 Trifolium pratense HOM05D006236 ORTHO05D003486 2.3e-07 61.6 105 35.2
FAN27G1104 Fragaria x ananassa HOM05D006236 ORTHO05D003486 3.0e-07 61.2 107 34.6
SEGI_21165 Sequoiadendron giganteum HOM05D029892 ORTHO05D003486 3.0e-07 61.2 94 37.2
Oeu016130.1 Olea europaea HOM05D006236 ORTHO05D003486 5.0e-07 60.5 129 28.7
SEGI_20168 Sequoiadendron giganteum HOM05D029892 ORTHO05D003486 5.0e-07 60.5 88 36.4
Os04g0221000 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 6.6e-07 60.1 95 32.6
Cpa.g.sc1156.1 Carica papaya HOM05D029276 ORTHO05D003486 8.6e-07 59.7 444 23.6
Solyc04g057970.3 Solanum lycopersicum HOM05D020480 ORTHO05D003486 1.5e-06 58.9 94 30.9
Sopen04g025830 Solanum pennellii HOM05D020480 ORTHO05D003486 1.5e-06 58.9 94 30.9
AagrBONN_evm.TU.Sc2ySwM_228.1542 Anthoceros agrestis HOM05D002377 ORTHO05D003486 2.5e-06 58.2 99 33.3
SMO196G0029 Selaginella moellendorffii HOM05D002377 ORTHO05D003486 5.6e-06 57.0 85 32.9
Mapoly0015s0190 Marchantia polymorpha HOM05D006236 ORTHO05D003486 7.3e-06 56.6 106 31.1


User provided reference genes

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