Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa010533 Carpinus fangiana HOM05D003115 ORTHO05D003595 0.0e+00 1730.7 894 100.0
Cfa009508 Carpinus fangiana HOM05D003115 ORTHO05D003595 0.0e+00 1269.6 729 92.3
CiPaw.14G076100 Carya illinoinensis HOM05D003115 ORTHO05D003595 3.3e-300 1035.0 730 76.2
QL04p081909 Quercus lobata HOM05D003115 ORTHO05D003595 5.0e-296 1021.1 733 74.9
Haze_07640 Corylus avellana HOM05D003115 ORTHO05D003595 4.2e-295 1018.1 638 86.1
Dinv16255 Davidia involucrata HOM05D003115 ORTHO05D003595 7.3e-247 857.8 737 63.8
TAR636G1491 Trochodendron aralioides HOM05D003115 ORTHO05D003595 2.6e-244 849.4 726 64.3
TWI56G0473 Tripterygium wilfordii HOM05D003115 ORTHO05D003595 2.7e-241 839.3 725 62.2
RcHm_v2.0_Chr2g0137101 Rosa chinensis HOM05D003115 ORTHO05D003595 3.3e-239 832.4 727 62.7
MD17G1201300 Malus domestica HOM05D003115 ORTHO05D003595 2.3e-237 826.2 748 61.0
Actinidia35847 Actinidia chinensis HOM05D003115 ORTHO05D003595 2.7e-233 812.8 735 60.8
Lj6g0020396 Lotus japonicus HOM05D003115 ORTHO05D003595 1.3e-232 810.4 728 59.8
FAN14G0460 Fragaria x ananassa HOM05D003115 ORTHO05D003595 6.6e-232 808.1 732 60.0
FAN09G2094 Fragaria x ananassa HOM05D003115 ORTHO05D003595 5.6e-231 805.1 732 60.1
GSVIVG01021009001 Vitis vinifera HOM05D003115 ORTHO05D003595 2.1e-230 803.1 727 60.2
FAN02G0145 Fragaria x ananassa HOM05D003115 ORTHO05D003595 2.8e-230 802.7 732 60.0
Thecc.04G196300 Theobroma cacao HOM05D003115 ORTHO05D003595 2.8e-230 802.7 746 58.8
FvH4_6g30710 Fragaria vesca HOM05D003115 ORTHO05D003595 4.7e-230 802.0 732 59.8
FAN05G1620 Fragaria x ananassa HOM05D003115 ORTHO05D003595 1.8e-229 800.0 732 59.7
Duzib212G0201 Durio zibethinus HOM05D003115 ORTHO05D003595 4.4e-228 795.4 746 59.0
Gorai.011G152900 Gossypium raimondii HOM05D003115 ORTHO05D003595 1.1e-226 790.8 746 57.9
Manes.15G056200 Manihot esculenta HOM05D003115 ORTHO05D003595 1.4e-226 790.4 727 58.6
COL.COLO4_20215 Corchorus olitorius HOM05D003115 ORTHO05D003595 6.0e-225 785.0 750 57.7
Glyma.18G016000 Glycine max HOM05D003115 ORTHO05D003595 7.8e-225 784.6 731 58.7
Gohir.D10G137700 Gossypium hirsutum HOM05D003115 ORTHO05D003595 2.3e-224 783.1 746 57.5
Lj6C385T7 Lonicera japonica HOM05D003115 ORTHO05D003595 6.6e-224 781.6 663 64.1
TPR.G14704 Trifolium pratense HOM05D003115 ORTHO05D003595 1.9e-223 780.0 729 57.9
Phvul.001G253000 Phaseolus vulgaris HOM05D003115 ORTHO05D003595 5.6e-223 778.5 727 58.6
Gohir.A10G128200 Gossypium hirsutum HOM05D003115 ORTHO05D003595 1.8e-221 773.5 746 57.2
Nn4g23612 Nelumbo nucifera HOM05D003115 ORTHO05D003595 4.9e-219 765.4 726 58.1
arahy.Tifrunner.gnm1.ann1.QS081X Arachis hypogaea HOM05D003115 ORTHO05D003595 8.4e-219 764.6 746 56.8
Sed0014363 Sechium edule HOM05D003115 ORTHO05D003595 4.2e-218 762.3 726 58.7
CSS0038204 Camellia sinensis var. sinensis HOM05D003115 ORTHO05D003595 9.3e-218 761.1 722 59.8
CSS0000754 Camellia sinensis var. sinensis HOM05D003115 ORTHO05D003595 6.0e-217 758.4 722 59.7
Medtr3g083970 Medicago truncatula HOM05D003115 ORTHO05D003595 6.0e-217 758.4 734 58.2
Prupe.3G074200 Prunus persica HOM05D003115 ORTHO05D003595 1.0e-216 757.7 661 61.9
ClCG06G007990 Citrullus lanatus HOM05D003115 ORTHO05D003595 1.3e-216 757.3 728 59.1
Solyc09g092240.3 Solanum lycopersicum HOM05D003115 ORTHO05D003595 2.1e-214 750.0 737 56.9
Atru.chr10.1944 Acer truncatum HOM05D003115 ORTHO05D003595 6.2e-214 748.4 727 58.5
Lalb_Chr23g0269101 Lupinus albus HOM05D003115 ORTHO05D003595 6.2e-214 748.4 726 57.4
arahy.Tifrunner.gnm1.ann1.01WSAY Arachis hypogaea HOM05D003115 ORTHO05D003595 1.8e-213 746.9 805 53.2
COL.COLO4_33741 Corchorus olitorius HOM05D003115 ORTHO05D003595 3.1e-213 746.1 745 56.1
Prupe.3G077100 Prunus persica HOM05D003115 ORTHO05D003595 4.0e-213 745.7 731 57.6
Aqoxy5G00431 Aquilegia oxysepala HOM05D003115 ORTHO05D003595 1.2e-212 744.2 726 57.2
DCAR_007830 Daucus carota HOM05D003115 ORTHO05D003595 1.3e-211 740.7 736 55.2
PGR119G1374 Punica granatum HOM05D003115 ORTHO05D003595 4.2e-210 735.7 716 54.6
Sopen09g035170 Solanum pennellii HOM05D003115 ORTHO05D003595 9.3e-210 734.6 737 56.2
Oeu002918.1 Olea europaea HOM05D003115 ORTHO05D003595 7.9e-209 731.5 743 54.8
CsaV3_2G011790 Cucumis sativus L. HOM05D003115 ORTHO05D003595 1.3e-208 730.7 727 57.8
MBI17_g03746_MAGBIO Magnolia biondii HOM05D003115 ORTHO05D003595 1.3e-208 730.7 699 58.4
Lsat_1_v5_gn_6_59340 Lactuca sativa HOM05D003115 ORTHO05D003595 1.8e-208 730.3 693 57.7
Cpa.g.sc83.40 Carica papaya HOM05D003115 ORTHO05D003595 2.3e-208 729.9 742 56.2
MELO3C020422.2 Cucumis melo HOM05D003115 ORTHO05D003595 3.0e-208 729.6 728 57.6
Nitab4.5_0012127g0010 Nicotiana tabacum HOM05D003115 ORTHO05D003595 1.9e-207 726.9 715 57.2
VMungo1383G2293 Vigna mungo HOM05D003115 ORTHO05D003595 3.3e-207 726.1 725 56.4
Ciclev10004117m.g Citrus clementina HOM05D003115 ORTHO05D003595 4.9e-203 712.2 725 57.0
Peaxi162Scf00047g00136 Petunia axillaris HOM05D003115 ORTHO05D003595 4.2e-202 709.1 712 55.3
PSO210G2420 Papaver somniferum HOM05D003115 ORTHO05D003595 1.2e-201 707.6 749 53.5
Potri.001G318800 Populus trichocarpa HOM05D003115 ORTHO05D003595 4.6e-201 705.7 860 48.7
CANSAT78G1701 Cannabis sativa HOM05D003115 ORTHO05D003595 7.9e-201 704.9 652 58.1
SGA_v2.0_scaffold5G03024 Striga asiatica HOM05D003115 ORTHO05D003595 4.3e-199 699.1 737 53.7
SalBow3G3081 Salvia bowleyana HOM05D003115 ORTHO05D003595 6.2e-198 695.3 708 55.2
PSO832G1670 Papaver somniferum HOM05D003115 ORTHO05D003595 1.1e-197 694.5 753 53.0
Migut.B01882 Erythranthe guttata HOM05D003115 ORTHO05D003595 1.2e-196 691.0 737 53.1
Sabra16G0201800 Salix brachista HOM05D003115 ORTHO05D003595 1.5e-196 690.6 862 48.4
Rhsim09G0059200 Rhododendron simsii HOM05D003115 ORTHO05D003595 4.9e-195 685.6 721 55.6
Ca_07922_v3 Cicer arietinum L. HOM05D003115 ORTHO05D003595 1.9e-191 673.7 644 57.6
vmacro00444 Vaccinium macrocarpon HOM05D003115 ORTHO05D003595 8.5e-187 658.3 760 52.8
Carub.0007s0955 Capsella rubella HOM05D003115 ORTHO05D003595 5.3e-181 639.0 732 49.7
Sp7g28860 Schrenkiella parvula HOM05D003115 ORTHO05D003595 2.6e-180 636.7 734 50.3
HanXRQChr17g0546471 Helianthus annuus HOM05D003115 ORTHO05D003595 4.5e-180 636.0 734 50.1
Aa31LG2G19350 Aethionema arabicum HOM05D003115 ORTHO05D003595 2.5e-178 630.2 731 50.3
Hund29080 Selenicereus undatus HOM05D003115 ORTHO05D003595 1.6e-177 627.5 746 48.0
Hund29082 Selenicereus undatus HOM05D003115 ORTHO05D003595 1.6e-177 627.5 746 48.0
AT4G30990 Arabidopsis thaliana HOM05D003115 ORTHO05D003595 3.0e-176 623.2 733 48.8
EL10Ac3g07463 Beta vulgaris HOM05D003115 ORTHO05D003595 3.9e-176 622.9 728 48.8
AUR62018566 Chenopodium quinoa HOM05D003115 ORTHO05D003595 7.4e-175 618.6 726 47.4
AUR62020852 Chenopodium quinoa HOM05D003115 ORTHO05D003595 7.4e-175 618.6 726 47.8
Oeu043446.1 Olea europaea HOM05D003115 ORTHO05D003595 2.4e-173 613.6 721 50.2
Ah.04g149340 Amaranthus hybridus HOM05D003115 ORTHO05D003595 5.9e-172 609.0 725 47.3
AL7G21090 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 1.2e-169 601.3 733 49.0
A03p60500 Brassica napus HOM05D003115 ORTHO05D003595 2.3e-168 597.0 734 47.1
ATR0665G483 Amborella trichopoda HOM05D003115 ORTHO05D003595 3.9e-168 596.3 686 50.0
CAN.G1155.21 Capsicum annuum HOM05D003115 ORTHO05D003595 4.4e-167 592.8 502 61.4
CARHR238880 Cardamine hirsuta HOM05D003115 ORTHO05D003595 6.5e-163 578.9 744 47.6
THA.LOC104808700 Tarenaya hassleriana HOM05D003115 ORTHO05D003595 1.5e-162 577.8 741 46.8
ECA233G4989 Erigeron canadensis HOM05D003115 ORTHO05D003595 1.2e-161 574.7 689 48.5
CDE07G0216 Ceratophyllum demersum HOM05D003115 ORTHO05D003595 2.3e-160 570.5 685 48.5
BcaNung01550 Brassica carinata HOM05D003115 ORTHO05D003595 1.3e-155 554.7 734 45.2
Zm00001eb121880 Zea mays HOM05D003115 ORTHO05D003595 6.5e-155 552.4 700 44.6
Thhalv10024182m.g Eutrema salsugineum HOM05D003115 ORTHO05D003595 1.2e-153 548.1 738 44.9
BcaNung02730 Brassica carinata HOM05D003115 ORTHO05D003595 3.7e-150 536.6 731 43.5
C07p58370 Brassica napus HOM05D003115 ORTHO05D003595 4.1e-149 533.1 730 43.0
AL1G38530 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 5.9e-148 529.3 742 44.3
BolC7t46291H Brassica oleracea HOM05D003115 ORTHO05D003595 4.2e-146 523.1 754 41.8
HPP92_007257 Vanilla planifolia HOM05D003115 ORTHO05D003595 5.5e-146 522.7 666 45.0
BraA03t15089Z Brassica rapa HOM05D003115 ORTHO05D003595 1.6e-145 521.2 708 44.1
Atru.chr4.1597 Acer truncatum HOM05D003115 ORTHO05D003595 8.9e-144 515.4 498 58.2
SEGI_04472 Sequoiadendron giganteum HOM05D003115 ORTHO05D003595 7.8e-140 502.3 734 41.3
Carub.0001s2398 Capsella rubella HOM05D003115 ORTHO05D003595 1.3e-139 501.5 742 43.0
AL1G41060 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 2.9e-139 500.4 733 44.9
Carub.0005s0720 Capsella rubella HOM05D003115 ORTHO05D003595 3.8e-139 500.0 755 42.9
BraA09t39538Z Brassica rapa HOM05D003115 ORTHO05D003595 1.5e-135 488.0 723 41.2
AL1G39310 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 7.5e-135 485.7 699 44.6
A09p40420 Brassica napus HOM05D003115 ORTHO05D003595 3.2e-133 480.3 723 40.5
CARHR024920 Cardamine hirsuta HOM05D003115 ORTHO05D003595 2.0e-132 477.6 725 42.5
Thhalv10009353m.g Eutrema salsugineum HOM05D003115 ORTHO05D003595 4.1e-125 453.4 712 41.0
Eucgr.H00031 Eucalyptus grandis HOM05D003115 ORTHO05D003595 1.6e-121 441.4 532 48.5
Mapoly0054s0075 Marchantia polymorpha HOM05D003115 ORTHO05D003595 4.6e-108 396.7 742 33.8
Pp3c3_18970 Physcomitrium patens HOM05D003115 ORTHO05D003595 1.3e-107 395.2 719 35.0
Hund19003 Selenicereus undatus HOM05D003115 ORTHO05D003595 1.5e-106 391.7 386 52.6
AagrBONN_evm.TU.Sc2ySwM_228.2833 Anthoceros agrestis HOM05D003115 ORTHO05D003595 9.3e-93 345.9 686 33.7
Psat0s3058g0040 Pisum sativum HOM05D003115 ORTHO05D003595 2.3e-91 341.3 335 55.5
HPP92_007263 Vanilla planifolia HOM05D003115 ORTHO05D003595 4.5e-87 327.0 428 45.1
SMO164G0231 Selaginella moellendorffii HOM05D003115 ORTHO05D003595 3.3e-82 310.8 677 34.3
Sc25g0005820 Simmondsia chinensis HOM05D003115 ORTHO05D003595 6.5e-78 296.6 346 50.9
Rhsim02G0023500 Rhododendron simsii HOM05D003115 ORTHO05D003595 2.1e-76 291.6 382 45.8
Rhsim07G0171500 Rhododendron simsii HOM05D003115 ORTHO05D003595 7.9e-76 289.7 477 40.5
unitig_578.g16273 Utricularia gibba HOM05D003115 ORTHO05D003595 3.0e-75 287.7 647 34.5
Cc00_g09610 Coffea canephora HOM05D003115 ORTHO05D003595 1.3e-73 282.3 263 58.9
PGSC0003DMG400007741 Solanum tuberosum HOM05D003115 ORTHO05D003595 2.9e-70 271.2 254 58.7
HPP92_007262 Vanilla planifolia HOM05D003115 ORTHO05D003595 2.5e-69 268.1 304 47.7
SEGI_02895 Sequoiadendron giganteum HOM05D003115 ORTHO05D003595 1.4e-67 262.3 396 38.9
Rhsim07G0171100 Rhododendron simsii HOM05D003115 ORTHO05D003595 2.2e-65 255.0 312 46.5
Atru.chr4.1598 Acer truncatum HOM05D003115 ORTHO05D003595 1.4e-64 252.3 214 63.1
Psat4g000360 Pisum sativum HOM05D003115 ORTHO05D003595 3.8e-62 244.2 239 51.9
BcaC05g26357 Brassica carinata HOM05D003115 ORTHO05D003595 1.2e-60 239.2 391 40.4
BolC5t31099H Brassica oleracea HOM05D003115 ORTHO05D003595 6.1e-60 236.9 421 38.2
RcHm_v2.0_Chr2g0136151 Rosa chinensis HOM05D003115 ORTHO05D003595 1.4e-53 215.7 599 34.1
PGSC0003DMG400026434 Solanum tuberosum HOM05D003115 ORTHO05D003595 8.0e-44 183.3 179 54.7
Hma1.2p1_0039F.1_g024560 Hydrangea macrophylla HOM05D003115 ORTHO05D003595 6.7e-43 180.3 200 48.0
BraA09t42180Z Brassica rapa HOM05D003115 ORTHO05D003595 4.4e-42 177.6 656 27.1
C05p23800 Brassica napus HOM05D003115 ORTHO05D003595 7.5e-42 176.8 320 35.3
Nitab4.5_0000697g0090 Nicotiana tabacum HOM05D003115 ORTHO05D003595 1.1e-40 172.9 256 46.5
Cc00_g09570 Coffea canephora HOM05D003115 ORTHO05D003595 3.8e-38 164.5 139 64.7
Cc00_g27550 Coffea canephora HOM05D003115 ORTHO05D003595 2.5e-37 161.8 139 64.0
Cpa.g.sc83.36 Carica papaya HOM05D003115 ORTHO05D003595 7.2e-37 160.2 228 43.4
Cc00_g24200 Coffea canephora HOM05D003115 ORTHO05D003595 4.7e-36 157.5 201 49.8
Cre10.g461000 Chlamydomonas reinhardtii HOM05D003115 ORTHO05D003595 6.8e-35 153.7 446 28.5
Actinidia10072 Actinidia chinensis HOM05D003115 ORTHO05D003595 1.2e-34 152.9 120 63.3
Haze_25245 Corylus avellana HOM05D003115 ORTHO05D003595 1.2e-34 152.9 83 92.8
Haze_25344 Corylus avellana HOM05D003115 ORTHO05D003595 1.2e-34 152.9 86 89.5
Haze_13685 Corylus avellana HOM05D003115 ORTHO05D003595 3.4e-34 151.4 81 93.8
Oeu043445.1 Olea europaea HOM05D003115 ORTHO05D003595 1.1e-32 146.4 214 41.1
PRCOL_00001334 Prasinoderma coloniale HOM05D003115 ORTHO05D003595 3.5e-31 141.4 711 21.4
Hund11640 Selenicereus undatus HOM05D003115 ORTHO05D003595 7.7e-31 140.2 213 39.0
Cc00_g24210 Coffea canephora HOM05D003115 ORTHO05D003595 1.0e-30 139.8 195 38.5
Haze_18491 Corylus avellana HOM05D003115 ORTHO05D003595 1.0e-30 139.8 81 87.7
BcaC05g26355 Brassica carinata HOM05D003115 ORTHO05D003595 7.5e-26 123.6 128 53.9
MCO13G565 Micromonas commoda HOM05D003115 ORTHO05D003595 7.5e-26 123.6 740 23.0
CARHR255300 Cardamine hirsuta HOM05D003115 ORTHO05D003595 2.8e-25 121.7 203 36.9
COL.COLO4_08387 Corchorus olitorius HOM05D003115 ORTHO05D003595 1.1e-24 119.8 142 45.8
BraA09t42186Z Brassica rapa HOM05D003115 ORTHO05D003595 3.5e-23 114.8 518 25.9
CiPaw.14G076400 Carya illinoinensis HOM05D003115 ORTHO05D003595 1.7e-22 112.5 302 35.1
PGSC0003DMG400007742 Solanum tuberosum HOM05D000005 ORTHO05D003595 3.1e-19 101.7 82 68.3
Oeu049761.1 Olea europaea HOM05D003115 ORTHO05D003595 3.7e-17 94.7 325 27.4
Hund16694 Selenicereus undatus HOM05D003115 ORTHO05D003595 4.9e-17 94.4 131 42.7
Haze_25244 Corylus avellana HOM05D003115 ORTHO05D003595 1.1e-16 93.2 52 94.2
CDE07G0754 Ceratophyllum demersum HOM05D003115 ORTHO05D003595 2.4e-16 92.0 229 31.0
RcHm_v2.0_Chr2g0155431 Rosa chinensis HOM05D003115 ORTHO05D003595 8.9e-11 73.6 75 57.3
Actinidia30876 Actinidia chinensis HOM05D003115 ORTHO05D003595 1.2e-10 73.2 95 42.1
AUR62038226 Chenopodium quinoa HOM05D010117 ORTHO05D012431 1.5e-10 72.8 57 66.7
SEGI_06154 Sequoiadendron giganteum HOM05D003115 ORTHO05D003595 4.4e-10 71.2 193 26.9
BcaC05g26356 Brassica carinata HOM05D003115 ORTHO05D003595 1.3e-09 69.7 95 40.0
RcHm_v2.0_Chr6g0271321 Rosa chinensis HOM05D000001 ORTHO05D010702 1.1e-08 66.6 64 60.9
C05p23810 Brassica napus HOM05D003115 ORTHO05D003595 1.4e-08 66.2 117 35.9
CANSAT78G1406 Cannabis sativa HOM05D003115 ORTHO05D003595 2.3e-06 58.9 42 54.8


User provided reference genes

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