Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa010504 Carpinus fangiana HOM05D003943 ORTHO05D004753 3.1e-145 518.5 261 100.0
Haze_03432 Corylus avellana HOM05D003943 ORTHO05D004753 9.8e-144 513.5 261 98.5
Haze_20185 Corylus avellana HOM05D003943 ORTHO05D004753 9.8e-144 513.5 261 98.5
CiPaw.10G017400 Carya illinoinensis HOM05D003943 ORTHO05D004753 2.1e-138 495.7 261 94.6
GSVIVG01011153001 Vitis vinifera HOM05D003943 ORTHO05D004753 1.1e-137 493.4 260 95.0
QL07p036748 Quercus lobata HOM05D003943 ORTHO05D004753 2.3e-137 492.3 260 94.6
RcHm_v2.0_Chr2g0122251 Rosa chinensis HOM05D003943 ORTHO05D004753 2.6e-136 488.8 261 93.5
RcHm_v2.0_Chr4g0409741 Rosa chinensis HOM05D003943 ORTHO05D004753 2.6e-136 488.8 261 93.5
Nn2g14305 Nelumbo nucifera HOM05D003943 ORTHO05D004753 4.4e-136 488.0 261 92.7
Actinidia38793 Actinidia chinensis HOM05D003943 ORTHO05D004753 7.5e-136 487.3 261 92.7
Ciclev10012509m.g Citrus clementina HOM05D003943 ORTHO05D004753 7.5e-136 487.3 261 92.7
FvH4_1g24730 Fragaria vesca HOM05D003943 ORTHO05D004753 7.5e-136 487.3 261 93.1
FvH4_1g24810 Fragaria vesca HOM05D003943 ORTHO05D004753 7.5e-136 487.3 261 93.1
FAN19G3070 Fragaria x ananassa HOM05D003943 ORTHO05D004753 7.5e-136 487.3 261 93.1
Lj6A21G25 Lonicera japonica HOM05D003943 ORTHO05D004753 9.8e-136 486.9 261 92.3
Actinidia21868 Actinidia chinensis HOM05D003943 ORTHO05D004753 1.3e-135 486.5 261 92.7
Prupe.4G241300 Prunus persica HOM05D003943 ORTHO05D004753 1.3e-135 486.5 261 92.3
Atru.chr12.911 Acer truncatum HOM05D003943 ORTHO05D004753 2.2e-135 485.7 261 92.7
Atru.chr8.1362 Acer truncatum HOM05D003943 ORTHO05D004753 2.9e-135 485.3 261 92.3
Hund10875 Selenicereus undatus HOM05D003943 ORTHO05D004753 2.9e-135 485.3 261 92.3
MELO3C024586.2 Cucumis melo HOM05D003943 ORTHO05D004753 3.7e-135 485.0 261 92.0
Lj6A3G40 Lonicera japonica HOM05D003943 ORTHO05D004753 3.7e-135 485.0 260 92.3
CANSAT64G2459 Cannabis sativa HOM05D003943 ORTHO05D004753 4.9e-135 484.6 261 92.0
TWI77G0554 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 4.9e-135 484.6 261 92.0
Manes.01G025400 Manihot esculenta HOM05D003943 ORTHO05D004753 6.4e-135 484.2 261 91.2
Lsat_1_v5_gn_4_88760 Lactuca sativa HOM05D003943 ORTHO05D004753 1.1e-134 483.4 261 91.6
Manes.08G033500 Manihot esculenta HOM05D003943 ORTHO05D004753 1.4e-134 483.0 261 90.8
TWI74G1172 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 1.4e-134 483.0 261 91.6
HanXRQChr17g0533251 Helianthus annuus HOM05D003943 ORTHO05D004753 1.9e-134 482.6 261 92.0
Sopen09g036280 Solanum pennellii HOM05D003943 ORTHO05D004753 2.4e-134 482.3 261 91.6
CsaV3_6G041100 Cucumis sativus L. HOM05D003943 ORTHO05D004753 4.1e-134 481.5 261 91.6
Dinv20358 Davidia involucrata HOM05D003943 ORTHO05D004753 4.1e-134 481.5 261 91.2
HanXRQChr09g0277391 Helianthus annuus HOM05D003943 ORTHO05D004753 4.1e-134 481.5 261 91.6
Lsat_1_v5_gn_6_32361 Lactuca sativa HOM05D003943 ORTHO05D004753 4.1e-134 481.5 260 91.5
TAR633G0404 Trochodendron aralioides HOM05D003943 ORTHO05D004753 5.4e-134 481.1 261 90.8
PGSC0003DMG400021625 Solanum tuberosum HOM05D003943 ORTHO05D004753 7.1e-134 480.7 261 91.2
ClCG01G015010 Citrullus lanatus HOM05D003943 ORTHO05D004753 9.2e-134 480.3 261 91.6
MSTRG.10894 Avicennia marina HOM05D003943 ORTHO05D004753 1.6e-133 479.6 261 91.2
Oeu049654.1 Olea europaea HOM05D003943 ORTHO05D004753 1.6e-133 479.6 261 92.0
CSS0000599 Camellia sinensis var. sinensis HOM05D003943 ORTHO05D004753 2.1e-133 479.2 258 91.9
Sabra16G0070600 Salix brachista HOM05D003943 ORTHO05D004753 2.1e-133 479.2 261 90.8
Sabra16G0072800 Salix brachista HOM05D003943 ORTHO05D004753 2.1e-133 479.2 261 90.8
Sed0023950 Sechium edule HOM05D003943 ORTHO05D004753 2.1e-133 479.2 261 92.0
TAR623G0676 Trochodendron aralioides HOM05D003943 ORTHO05D004753 3.5e-133 478.4 261 90.0
Sed0024685 Sechium edule HOM05D003943 ORTHO05D004753 4.6e-133 478.0 261 91.6
MD05G1235300 Malus domestica HOM05D003943 ORTHO05D004753 6.0e-133 477.6 261 90.4
Potri.016G070400 Populus trichocarpa HOM05D003943 ORTHO05D004753 6.0e-133 477.6 261 90.0
Rhsim08G0248000 Rhododendron simsii HOM05D003943 ORTHO05D004753 7.8e-133 477.2 261 89.7
vmacro18760 Vaccinium macrocarpon HOM05D003943 ORTHO05D004753 7.8e-133 477.2 265 89.4
CDE10G1025 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 1.0e-132 476.9 261 90.8
THA.LOC104826802 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 1.0e-132 476.9 261 90.8
MD10G1211300 Malus domestica HOM05D003943 ORTHO05D004753 1.3e-132 476.5 261 90.4
unitig_32.g11085 Utricularia gibba HOM05D003943 ORTHO05D004753 1.3e-132 476.5 260 91.2
Oeu039454.1 Olea europaea HOM05D003943 ORTHO05D004753 2.3e-132 475.7 260 91.5
Potri.006G203400 Populus trichocarpa HOM05D003943 ORTHO05D004753 3.9e-132 474.9 261 90.0
Eucgr.K02620 Eucalyptus grandis HOM05D003943 ORTHO05D004753 8.6e-132 473.8 261 90.0
THA.LOC104809953 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 8.6e-132 473.8 261 90.4
Migut.I01176 Erythranthe guttata HOM05D003943 ORTHO05D004753 1.1e-131 473.4 261 89.7
ATR0772G207 Amborella trichopoda HOM05D003943 ORTHO05D004753 1.5e-131 473.0 261 88.5
Hma1.2p1_1104F.1_g257380 Hydrangea macrophylla HOM05D003943 ORTHO05D004753 1.5e-131 473.0 259 91.5
PGR004G2105 Punica granatum HOM05D003943 ORTHO05D004753 1.5e-131 473.0 261 90.0
PGR142G4032 Punica granatum HOM05D003943 ORTHO05D004753 1.5e-131 473.0 261 90.0
Cc04_g00390 Coffea canephora HOM05D003943 ORTHO05D004753 9.5e-131 470.3 269 87.7
Gohir.D01G191300 Gossypium hirsutum HOM05D003943 ORTHO05D004753 9.5e-131 470.3 261 89.3
Gorai.002G235200 Gossypium raimondii HOM05D003943 ORTHO05D004753 9.5e-131 470.3 261 89.3
Cpa.g.sc104.32 Carica papaya HOM05D003943 ORTHO05D004753 1.2e-130 469.9 261 89.7
Lalb_Chr02g0144091 Lupinus albus HOM05D003943 ORTHO05D004753 1.2e-130 469.9 261 89.3
Thecc.05G104300 Theobroma cacao HOM05D003943 ORTHO05D004753 1.2e-130 469.9 261 89.3
HPP92_002146 Vanilla planifolia HOM05D003943 ORTHO05D004753 1.2e-130 469.9 256 90.2
SalBow6G5742 Salvia bowleyana HOM05D003943 ORTHO05D004753 1.6e-130 469.5 261 88.9
Glyma.02G196900 Glycine max HOM05D003943 ORTHO05D004753 2.1e-130 469.2 261 88.9
ECA233G4676 Erigeron canadensis HOM05D003943 ORTHO05D004753 2.8e-130 468.8 261 89.3
VMungo0331G0074 Vigna mungo HOM05D003943 ORTHO05D004753 2.8e-130 468.8 261 88.9
VMungo0720G1310 Vigna mungo HOM05D003943 ORTHO05D004753 2.8e-130 468.8 261 88.9
Phvul.010G103000 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 3.6e-130 468.4 261 88.9
Gohir.A09G134200 Gossypium hirsutum HOM05D003943 ORTHO05D004753 4.7e-130 468.0 261 88.5
Gorai.006G149400 Gossypium raimondii HOM05D003943 ORTHO05D004753 4.7e-130 468.0 261 88.5
Lalb_Chr11g0067891 Lupinus albus HOM05D003943 ORTHO05D004753 6.2e-130 467.6 261 88.9
Aa31sc52G210 Aethionema arabicum HOM05D003943 ORTHO05D004753 8.1e-130 467.2 261 88.5
AT5G06360 Arabidopsis thaliana HOM05D003943 ORTHO05D004753 8.1e-130 467.2 261 88.9
Duzib093G1950 Durio zibethinus HOM05D003943 ORTHO05D004753 8.1e-130 467.2 261 88.5
Glyma.10G081400 Glycine max HOM05D003943 ORTHO05D004753 8.1e-130 467.2 261 88.1
FAN23G0735 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.1e-129 466.8 277 86.6
Glyma.10G002300 Glycine max HOM05D003943 ORTHO05D004753 1.1e-129 466.8 261 88.1
Gohir.A01G201400 Gossypium hirsutum HOM05D003943 ORTHO05D004753 1.1e-129 466.8 261 88.9
arahy.Tifrunner.gnm1.ann1.07MWYB Arachis hypogaea HOM05D003943 ORTHO05D004753 1.8e-129 466.1 261 88.1
arahy.Tifrunner.gnm1.ann1.T05T6P Arachis hypogaea HOM05D003943 ORTHO05D004753 1.8e-129 466.1 261 88.1
Phvul.007G268100 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 1.8e-129 466.1 261 88.5
Peaxi162Scf00286g00330 Petunia axillaris HOM05D003943 ORTHO05D004753 6.8e-129 464.2 264 87.9
EL10Ac5g12966 Beta vulgaris HOM05D003943 ORTHO05D004753 8.9e-129 463.8 260 89.2
Sp6g36490 Schrenkiella parvula HOM05D003943 ORTHO05D004753 8.9e-129 463.8 261 87.7
COL.COLO4_29575 Corchorus olitorius HOM05D003943 ORTHO05D004753 1.2e-128 463.4 261 88.5
Sabra06G0156600 Salix brachista HOM05D003943 ORTHO05D004753 3.4e-128 461.8 285 82.5
PSO384G4082 Papaver somniferum HOM05D003943 ORTHO05D004753 7.6e-128 460.7 261 86.6
Ca_16636_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 1.3e-127 459.9 261 87.4
BcaB05g21673 Brassica carinata HOM05D003943 ORTHO05D004753 1.7e-127 459.5 261 87.0
PSO339G3654 Papaver somniferum HOM05D003943 ORTHO05D004753 1.7e-127 459.5 261 86.2
SGA_v2.0_scaffold71G24009 Striga asiatica HOM05D003943 ORTHO05D004753 1.7e-127 459.5 261 88.1
Aqoxy1G00659 Aquilegia oxysepala HOM05D003943 ORTHO05D004753 2.2e-127 459.1 261 87.0
AUR62036383 Chenopodium quinoa HOM05D003943 ORTHO05D004753 2.2e-127 459.1 261 87.4
Nitab4.5_0008073g0030 Nicotiana tabacum HOM05D003943 ORTHO05D004753 2.9e-127 458.8 261 87.7
AL6G16440 Arabidopsis lyrata HOM05D003943 ORTHO05D004753 3.7e-127 458.4 261 87.7
CiPaw.09G020900 Carya illinoinensis HOM05D003943 ORTHO05D004753 3.7e-127 458.4 240 95.0
C09p70420 Brassica napus HOM05D003943 ORTHO05D004753 4.9e-127 458.0 260 86.9
BolC9t59788H Brassica oleracea HOM05D003943 ORTHO05D004753 4.9e-127 458.0 260 86.9
Lj1g0010263 Lotus japonicus HOM05D003943 ORTHO05D004753 4.9e-127 458.0 261 85.4
Psat6g114680 Pisum sativum HOM05D003943 ORTHO05D004753 4.9e-127 458.0 261 86.6
CARHR207110 Cardamine hirsuta HOM05D003943 ORTHO05D004753 6.4e-127 457.6 261 85.4
C02p02670 Brassica napus HOM05D003943 ORTHO05D004753 8.4e-127 457.2 261 86.6
BolC2t06233H Brassica oleracea HOM05D003943 ORTHO05D004753 8.4e-127 457.2 261 86.6
BcaC03g13169 Brassica carinata HOM05D003943 ORTHO05D004753 1.4e-126 456.4 261 86.2
Thhalv10014439m.g Eutrema salsugineum HOM05D003943 ORTHO05D004753 2.4e-126 455.7 261 87.0
Pp3c7_2280 Physcomitrium patens HOM05D003943 ORTHO05D004753 2.4e-126 455.7 261 85.4
SMO367G0573 Selaginella moellendorffii HOM05D003943 ORTHO05D004753 3.2e-126 455.3 261 84.7
A10p30010 Brassica napus HOM05D003943 ORTHO05D004753 5.4e-126 454.5 259 86.9
BraA10t45041Z Brassica rapa HOM05D003943 ORTHO05D004753 5.4e-126 454.5 259 86.9
Ca_11700_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 5.4e-126 454.5 261 86.6
BraA02t04878Z Brassica rapa HOM05D003943 ORTHO05D004753 9.2e-126 453.8 260 86.2
AUR62030745 Chenopodium quinoa HOM05D003943 ORTHO05D004753 2.7e-125 452.2 256 87.1
TPR.G5876 Trifolium pratense HOM05D003943 ORTHO05D004753 4.6e-125 451.4 261 86.2
Carub.0006s0525 Capsella rubella HOM05D003943 ORTHO05D004753 6.0e-125 451.1 261 86.6
FAN19G1372 Fragaria x ananassa HOM05D003943 ORTHO05D004753 6.0e-125 451.1 241 93.4
Ah.12g059190 Amaranthus hybridus HOM05D003943 ORTHO05D004753 1.3e-124 449.9 261 85.8
FAN28G2380 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.7e-124 449.5 241 92.9
Mapoly0020s0123 Marchantia polymorpha HOM05D003943 ORTHO05D004753 1.7e-124 449.5 261 84.3
AagrBONN_evm.TU.Sc2ySwM_369.90 Anthoceros agrestis HOM05D003943 ORTHO05D004753 2.3e-124 449.1 261 83.5
Medtr3g088865 Medicago truncatula HOM05D003943 ORTHO05D004753 1.5e-123 446.4 261 83.9
CBR_g12036 Chara braunii HOM05D003943 ORTHO05D004753 3.3e-123 445.3 261 83.5
Medtr0508s0010 Medicago truncatula HOM05D003943 ORTHO05D004753 1.8e-121 439.5 261 83.9
Os07g0673100 Oryza sativa ssp. japonica HOM05D003943 ORTHO05D004753 5.2e-121 438.0 261 83.9
Lj2g0010046 Lotus japonicus HOM05D003943 ORTHO05D004753 1.3e-119 433.3 261 82.8
TPR.G2813 Trifolium pratense HOM05D003943 ORTHO05D004753 2.2e-119 432.6 277 80.1
Zm00001eb111290 Zea mays HOM05D003943 ORTHO05D004753 1.1e-115 420.2 261 80.8
Zm00001eb330440 Zea mays HOM05D003943 ORTHO05D004753 1.1e-115 420.2 261 80.8
Cre12.g507300 Chlamydomonas reinhardtii HOM05D003943 ORTHO05D004753 6.2e-114 414.5 261 78.5
PGSC0003DMG400029099 Solanum tuberosum HOM05D003943 ORTHO05D004753 2.4e-113 412.5 261 81.2
MCO03G138 Micromonas commoda HOM05D003943 ORTHO05D004753 1.5e-112 409.8 261 75.5
FAN26G0481 Fragaria x ananassa HOM05D003943 ORTHO05D004753 9.9e-112 407.1 337 66.2
PRCOL_00000915 Prasinoderma coloniale HOM05D003943 ORTHO05D004753 1.3e-111 406.8 261 78.2
Gohir.D09G130700 Gossypium hirsutum HOM05D003943 ORTHO05D004753 1.4e-110 403.3 261 79.7
Dinv37798 Davidia involucrata HOM05D003943 ORTHO05D004753 1.2e-109 400.2 213 91.5
Sc14g0006610 Simmondsia chinensis HOM05D003943 ORTHO05D004753 1.2e-109 400.2 222 89.6
AagrBONN_evm.TU.Sc2ySwM_340.394 Anthoceros agrestis HOM05D003943 ORTHO05D004753 7.9e-109 397.5 266 75.9
Rhsim05G0206200 Rhododendron simsii HOM05D003943 ORTHO05D004753 1.1e-107 393.7 261 78.2
DCAR_016668 Daucus carota HOM05D003943 ORTHO05D004753 7.3e-107 391.0 254 77.6
DCAR_017903 Daucus carota HOM05D003943 ORTHO05D004753 3.6e-106 388.7 240 80.0
CAN.G710.48 Capsicum annuum HOM05D003943 ORTHO05D004753 1.5e-104 383.3 309 68.6
unitig_748.g7832 Utricularia gibba HOM05D003943 ORTHO05D004753 5.8e-104 381.3 201 92.0
Aa31LG3G5080 Aethionema arabicum HOM05D003943 ORTHO05D004753 4.8e-98 361.7 200 89.0
SEGI_04875 Sequoiadendron giganteum HOM05D003943 ORTHO05D004753 1.5e-96 356.7 195 87.2
Nitab4.5_0003291g0080 Nicotiana tabacum HOM05D003943 ORTHO05D004753 1.0e-95 354.0 256 74.6
FAN23G1436 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.5e-91 340.1 177 92.7
Haze_27191 Corylus avellana HOM05D003943 ORTHO05D004753 2.8e-90 335.9 260 64.2
Peaxi162Scf01149g00220 Petunia axillaris HOM05D003943 ORTHO05D004753 1.2e-80 303.9 161 89.4
Cfa024104 Carpinus fangiana HOM05D003943 ORTHO05D123184 1.9e-70 270.0 229 59.4
TPR.G6300 Trifolium pratense HOM05D003943 ORTHO05D004753 3.1e-65 252.7 240 60.4
BcaNung06320 Brassica carinata HOM05D003943 ORTHO05D004753 1.5e-59 233.8 143 83.9
CDE10G0110 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 3.3e-59 232.6 135 88.9
BcaC06g32370 Brassica carinata HOM05D003943 ORTHO05D004753 5.7e-59 231.9 142 83.1
CDE10G0220 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 1.3e-55 220.7 113 92.0
SHI12410 Sapria himalayana HOM05D003943 ORTHO05D004753 7.7e-48 194.9 98 91.8
RcHm_v2.0_Chr7g0216551 Rosa chinensis HOM05D003943 ORTHO05D004753 4.2e-46 189.1 271 48.7
Lsat_1_v5_gn_8_162181 Lactuca sativa HOM05D003943 ORTHO05D004753 4.0e-44 182.6 109 83.5
Duzib106G1686 Durio zibethinus HOM05D003943 ORTHO05D004753 4.5e-40 169.1 103 81.6
RcHm_v2.0_Chr7g0216591 Rosa chinensis HOM05D003943 ORTHO05D004753 2.3e-39 166.8 108 77.8
HanXRQChr03g0072971 Helianthus annuus HOM05D003943 ORTHO05D004753 9.5e-38 161.4 92 84.8
EL10Ac3g06422 Beta vulgaris HOM05D003943 ORTHO05D004753 2.8e-37 159.8 135 63.0
BcaC01g01015 Brassica carinata HOM05D003943 ORTHO05D004753 4.0e-36 156.0 100 82.0
Lj9C540G13 Lonicera japonica HOM05D003943 ORTHO05D004753 1.1e-33 147.9 195 46.7
SHI12413 Sapria himalayana HOM05D003943 ORTHO05D004753 4.3e-30 136.0 81 82.7
Lsat_1_v5_gn_6_65181 Lactuca sativa HOM05D003943 ORTHO05D000236 1.6e-29 134.0 92 72.8
Actinidia21636 Actinidia chinensis HOM05D003943 ORTHO05D004753 8.3e-26 121.7 111 62.2
SHI12416 Sapria himalayana HOM05D001600 ORTHO05D001502 6.8e-20 102.1 64 79.7
RcHm_v2.0_Chr7g0216581 Rosa chinensis HOM05D003943 ORTHO05D004753 6.0e-16 89.0 81 61.7
CAN.G1001.28 Capsicum annuum HOM05D003943 ORTHO05D005733 1.3e-10 71.2 59 62.7
SHI17182 Sapria himalayana HOM05D000004 ORTHO05D367797 1.3e-10 71.2 56 67.9
C03p87270 Brassica napus HOM05D000836 ORTHO05D000709 5.4e-09 65.9 44 77.3
SHI30650 Sapria himalayana HOM05D004596 ORTHO05D005853 3.5e-08 63.2 62 59.7
SHI32256 Sapria himalayana HOM05D003943 ORTHO05D001502 4.6e-08 62.8 35 80.0
BcaC05g26689 Brassica carinata HOM05D003943 ORTHO05D004753 3.0e-07 60.1 38 71.1
C04p30500 Brassica napus HOM05D002284 ORTHO05D033292 6.6e-07 58.9 34 79.4
Nitab4.5_0006519g0020 Nicotiana tabacum HOM05D000032 ORTHO05D005217 3.3e-06 56.6 52 61.5
BolC4t24585H Brassica oleracea HOM05D002284 ORTHO05D033292 5.6e-06 55.8 34 76.5


User provided reference genes

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