Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa010502 Carpinus fangiana HOM05D005413 ORTHO05D006536 2.7e-158 562.0 296 100.0
Haze_03431 Corylus avellana HOM05D005413 ORTHO05D006536 2.2e-139 499.2 281 95.4
Haze_03425 Corylus avellana HOM05D005413 ORTHO05D006536 1.6e-97 360.1 332 62.3
QL04p048808 Quercus lobata HOM05D005413 ORTHO05D006536 8.7e-72 274.6 389 45.0
Dinv04422 Davidia involucrata HOM05D005413 ORTHO05D006536 4.3e-71 272.3 299 53.2
TAR623G0045 Trochodendron aralioides HOM05D005413 ORTHO05D006536 2.8e-70 269.6 282 51.4
Nn2g14375 Nelumbo nucifera HOM05D005413 ORTHO05D006536 1.3e-62 244.2 297 46.5
Potri.008G001700 Populus trichocarpa HOM05D005413 ORTHO05D006536 1.8e-61 240.4 250 53.6
Hma1.2p1_0098F.1_g048260 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 1.0e-59 234.6 297 47.8
Potri.008G015500 Populus trichocarpa HOM05D005413 ORTHO05D006536 6.5e-59 231.9 250 52.0
Potri.010G244600 Populus trichocarpa HOM05D005413 ORTHO05D006536 4.2e-58 229.2 224 56.2
Hund06812 Selenicereus undatus HOM05D005413 ORTHO05D006536 7.2e-58 228.4 289 47.8
CSS0050484 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 2.1e-57 226.9 297 46.8
Thecc.10G119400 Theobroma cacao HOM05D005413 ORTHO05D006536 2.1e-57 226.9 283 48.1
MBI15_g31416_MAGBIO Magnolia biondii HOM05D005413 ORTHO05D006536 2.7e-57 226.5 282 45.7
Sabra10G0191100 Salix brachista HOM05D005413 ORTHO05D006536 2.7e-57 226.5 349 40.4
Sabra08G0009400 Salix brachista HOM05D005413 ORTHO05D006536 4.6e-57 225.7 241 50.6
Sc09g0004800 Simmondsia chinensis HOM05D005413 ORTHO05D006536 6.7e-56 221.9 287 47.0
Ciclev10028962m.g Citrus clementina HOM05D005413 ORTHO05D006536 1.3e-54 217.6 285 42.8
CSS0023574 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 6.3e-54 215.3 245 45.7
Dinv18856 Davidia involucrata HOM05D005413 ORTHO05D006536 1.5e-52 210.7 283 41.0
AUR62024117 Chenopodium quinoa HOM05D005413 ORTHO05D006536 2.2e-51 206.8 258 47.7
GSVIVG01037530001 Vitis vinifera HOM05D005413 ORTHO05D006536 2.2e-51 206.8 283 42.8
CiPaw.14G092700 Carya illinoinensis HOM05D005413 ORTHO05D006536 1.1e-50 204.5 285 41.4
Aqoxy1G00612 Aquilegia oxysepala HOM05D005413 ORTHO05D006536 2.5e-50 203.4 306 41.5
TWI79G1192 Tripterygium wilfordii HOM05D005413 ORTHO05D006536 1.6e-49 200.7 284 45.4
Actinidia11676 Actinidia chinensis HOM05D005413 ORTHO05D006536 2.1e-49 200.3 283 40.6
Hma1.2p1_0101F.1_g049660 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 1.4e-48 197.6 281 40.2
Actinidia37056 Actinidia chinensis HOM05D005413 ORTHO05D006536 1.8e-48 197.2 283 39.6
Gohir.D05G079900 Gossypium hirsutum HOM05D005413 ORTHO05D006536 1.8e-48 197.2 289 40.5
Duzib170G0305 Durio zibethinus HOM05D005413 ORTHO05D006536 3.0e-48 196.4 291 39.9
Gorai.009G081500 Gossypium raimondii HOM05D005413 ORTHO05D006536 3.0e-48 196.4 289 40.1
Gohir.A05G077100 Gossypium hirsutum HOM05D005413 ORTHO05D006536 5.7e-47 192.2 289 39.4
Duzib168G1403 Durio zibethinus HOM05D005413 ORTHO05D006536 7.4e-47 191.8 291 39.9
Thecc.09G267600 Theobroma cacao HOM05D005413 ORTHO05D006536 9.7e-47 191.4 306 39.2
QL01p019216 Quercus lobata HOM05D005413 ORTHO05D006536 3.7e-46 189.5 336 36.6
FvH4_3g26150 Fragaria vesca HOM05D005413 ORTHO05D006536 5.3e-45 185.7 253 41.5
Manes.11G103700 Manihot esculenta HOM05D005413 ORTHO05D006536 9.1e-45 184.9 289 40.8
Medtr4g050330 Medicago truncatula HOM05D005413 ORTHO05D006536 1.2e-44 184.5 284 39.8
Ah.03g136210 Amaranthus hybridus HOM05D005413 ORTHO05D006536 2.0e-44 183.7 258 45.3
TAR633G2414 Trochodendron aralioides HOM05D005413 ORTHO05D006536 2.0e-44 183.7 207 49.8
Atru.chr3.3078 Acer truncatum HOM05D005413 ORTHO05D006536 1.3e-43 181.0 285 38.6
Atru.chr3.3087 Acer truncatum HOM05D005413 ORTHO05D006536 1.3e-43 181.0 285 38.6
FAN11G2501 Fragaria x ananassa HOM05D005413 ORTHO05D006536 1.3e-43 181.0 256 41.0
MD11G1174800 Malus domestica HOM05D005413 ORTHO05D006536 2.2e-43 180.3 303 37.6
Prupe.6G147200 Prunus persica HOM05D005413 ORTHO05D006536 2.2e-43 180.3 300 38.0
CsaV3_6G038630 Cucumis sativus L. HOM05D005413 ORTHO05D006536 6.5e-43 178.7 285 37.2
HPP92_015644 Vanilla planifolia HOM05D005413 ORTHO05D006536 6.5e-43 178.7 261 43.3
ATR1120G017 Amborella trichopoda HOM05D005413 ORTHO05D006536 8.5e-43 178.3 290 37.9
EL10Ac6g13493 Beta vulgaris HOM05D005413 ORTHO05D006536 8.5e-43 178.3 255 43.9
Lj3g0006130 Lotus japonicus HOM05D005413 ORTHO05D006536 8.5e-43 178.3 284 38.0
MELO3C014525.2 Cucumis melo HOM05D005413 ORTHO05D006536 1.4e-42 177.6 285 36.8
RcHm_v2.0_Chr5g0049091 Rosa chinensis HOM05D005413 ORTHO05D006536 2.5e-42 176.8 256 40.2
TPR.G4599 Trifolium pratense HOM05D005413 ORTHO05D006536 3.2e-42 176.4 285 37.2
FAN25G1874 Fragaria x ananassa HOM05D005413 ORTHO05D006536 7.2e-42 175.3 256 39.8
Haze_15139 Corylus avellana HOM05D005413 ORTHO05D006536 1.2e-41 174.5 103 91.3
Lalb_Chr19g0136161 Lupinus albus HOM05D005413 ORTHO05D006536 7.9e-41 171.8 297 38.0
Dinv03807 Davidia involucrata HOM05D005413 ORTHO05D006536 1.8e-40 170.6 162 60.5
Ca_19483_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 3.9e-40 169.5 284 35.9
vmacro14313 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 6.7e-40 168.7 339 33.9
Lj2C36T10 Lonicera japonica HOM05D005413 ORTHO05D006536 1.1e-39 167.9 293 38.2
ClCG02G022490 Citrullus lanatus HOM05D005413 ORTHO05D006536 2.0e-39 167.2 286 36.0
Oeu031446.2 Olea europaea HOM05D005413 ORTHO05D006536 2.6e-39 166.8 226 42.0
Oeu033267.1 Olea europaea HOM05D005413 ORTHO05D006536 2.6e-39 166.8 340 39.1
Psat7g200680 Pisum sativum HOM05D005413 ORTHO05D006536 3.3e-39 166.4 285 35.4
AUR62005613 Chenopodium quinoa HOM05D005413 ORTHO05D006536 7.4e-39 165.2 204 49.0
MD03G1159500 Malus domestica HOM05D005413 ORTHO05D006536 1.7e-38 164.1 302 35.8
Rhsim01G0199900 Rhododendron simsii HOM05D005413 ORTHO05D006536 1.7e-38 164.1 385 31.2
Lj2A950G18 Lonicera japonica HOM05D005413 ORTHO05D006536 8.2e-38 161.8 205 44.9
ECA238G0598 Erigeron canadensis HOM05D005413 ORTHO05D006536 1.8e-37 160.6 290 38.3
Eucgr.J00585 Eucalyptus grandis HOM05D005413 ORTHO05D006536 3.1e-37 159.8 285 34.0
Sopen11g029620 Solanum pennellii HOM05D005413 ORTHO05D006536 5.3e-37 159.1 239 40.2
Rhsim01G0199600 Rhododendron simsii HOM05D005413 ORTHO05D006536 1.6e-36 157.5 400 30.2
PGSC0003DMG400002998 Solanum tuberosum HOM05D005413 ORTHO05D006536 1.6e-36 157.5 239 39.7
Solyc11g071950.3 Solanum lycopersicum HOM05D005413 ORTHO05D006536 2.0e-36 157.1 235 40.0
Phvul.011G100200 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 4.5e-36 156.0 283 36.0
Lalb_Chr03g0028501 Lupinus albus HOM05D005413 ORTHO05D006536 7.7e-36 155.2 283 36.0
Lj5g0017620 Lotus japonicus HOM05D005413 ORTHO05D006536 2.9e-35 153.3 235 41.7
PGR119G0748 Punica granatum HOM05D005413 ORTHO05D006536 5.0e-35 152.5 288 36.1
Os03g0274700 Oryza sativa ssp. japonica HOM05D005413 ORTHO05D006536 6.5e-35 152.1 301 35.5
FAN16G0400 Fragaria x ananassa HOM05D005413 ORTHO05D006536 8.5e-35 151.8 311 33.4
FAN16G2334 Fragaria x ananassa HOM05D005413 ORTHO05D006536 8.5e-35 151.8 311 33.4
DCAR_018207 Daucus carota HOM05D005413 ORTHO05D006536 1.5e-34 151.0 277 35.0
VMungo1127G2102 Vigna mungo HOM05D005413 ORTHO05D006536 1.9e-34 150.6 247 38.1
SEGI_03865 Sequoiadendron giganteum HOM05D005413 ORTHO05D006536 3.2e-34 149.8 310 34.8
Rhsim03G0094100 Rhododendron simsii HOM05D005413 ORTHO05D006536 4.2e-34 149.4 305 36.4
MSTRG.12398 Avicennia marina HOM05D005413 ORTHO05D006536 7.2e-34 148.7 246 38.6
Thhalv10014324m.g Eutrema salsugineum HOM05D005413 ORTHO05D006536 7.2e-34 148.7 264 37.5
FAN21G0466 Fragaria x ananassa HOM05D005413 ORTHO05D006536 2.1e-33 147.1 256 36.3
DCAR_012252 Daucus carota HOM05D005413 ORTHO05D006536 2.7e-33 146.7 237 38.4
Zm00001eb012330 Zea mays HOM05D005413 ORTHO05D006536 3.6e-33 146.4 296 33.8
Peaxi162Scf00429g00512 Petunia axillaris HOM05D005413 ORTHO05D006536 8.0e-33 145.2 207 40.6
Nitab4.5_0000158g0110 Nicotiana tabacum HOM05D005413 ORTHO05D006536 1.4e-32 144.4 253 34.0
PSO339G2181 Papaver somniferum HOM05D005413 ORTHO05D006536 1.4e-32 144.4 322 34.2
arahy.Tifrunner.gnm1.ann1.0IPW5R Arachis hypogaea HOM05D005413 ORTHO05D006536 1.8e-32 144.1 250 42.4
PSO384G0849 Papaver somniferum HOM05D005413 ORTHO05D006536 1.8e-32 144.1 322 33.9
arahy.Tifrunner.gnm1.ann1.BD57S3 Arachis hypogaea HOM05D005413 ORTHO05D006536 3.0e-32 143.3 250 42.4
Ca_10423_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 4.0e-32 142.9 240 40.8
Dinv33562 Davidia involucrata HOM05D005413 ORTHO05D006536 4.0e-32 142.9 185 42.2
arahy.Tifrunner.gnm1.ann1.C0JSMI Arachis hypogaea HOM05D005413 ORTHO05D006536 6.7e-32 142.1 285 35.4
Sp6g23150 Schrenkiella parvula HOM05D005413 ORTHO05D006536 8.8e-32 141.7 268 35.4
arahy.Tifrunner.gnm1.ann1.K4CWT5 Arachis hypogaea HOM05D005413 ORTHO05D006536 1.5e-31 141.0 285 35.1
Lalb_Chr21g0312751 Lupinus albus HOM05D005413 ORTHO05D006536 2.0e-31 140.6 233 40.3
COL.COLO4_00160 Corchorus olitorius HOM05D005413 ORTHO05D006536 2.6e-31 140.2 204 41.2
Glyma.12G095900 Glycine max HOM05D005413 ORTHO05D006536 7.5e-31 138.7 300 33.7
vmacro07276 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 7.5e-31 138.7 143 53.1
Cc01_g07840 Coffea canephora HOM05D005413 ORTHO05D006536 1.1e-29 134.8 202 38.1
Glyma.11G171773 Glycine max HOM05D005413 ORTHO05D006536 1.4e-29 134.4 311 33.1
HanXRQChr05g0137071 Helianthus annuus HOM05D005413 ORTHO05D006536 2.4e-29 133.7 237 37.6
Migut.D02382 Erythranthe guttata HOM05D005413 ORTHO05D006536 5.3e-29 132.5 227 39.6
Medtr1g090350 Medicago truncatula HOM05D005413 ORTHO05D006536 5.3e-29 132.5 210 41.0
Phvul.007G136700 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 1.6e-28 131.0 183 44.3
C03p12140 Brassica napus HOM05D005413 ORTHO05D006536 1.3e-27 127.9 258 34.5
CDE04G1023 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 1.7e-27 127.5 312 33.7
Lsat_1_v5_gn_2_106300 Lactuca sativa HOM05D005413 ORTHO05D006536 2.9e-27 126.7 310 32.9
TPR.G10267 Trifolium pratense HOM05D005413 ORTHO05D006536 2.9e-27 126.7 209 40.7
BcaC01g06609 Brassica carinata HOM05D005413 ORTHO05D006536 3.8e-27 126.3 258 33.7
BolC3t13687H Brassica oleracea HOM05D005413 ORTHO05D006536 3.8e-27 126.3 258 33.7
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 5.0e-27 125.9 294 32.0
unitig_899.g15382 Utricularia gibba HOM05D005413 ORTHO05D006536 5.0e-27 125.9 203 38.9
CARHR191490 Cardamine hirsuta HOM05D005413 ORTHO05D006536 1.5e-26 124.4 268 32.1
Nitab4.5_0008364g0010 Nicotiana tabacum HOM05D005413 ORTHO05D006536 1.5e-26 124.4 221 35.3
BraA03t10367Z Brassica rapa HOM05D005413 ORTHO05D006536 5.5e-26 122.5 258 33.3
A03p10550 Brassica napus HOM05D005413 ORTHO05D006536 6.1e-25 119.0 258 32.9
Sed0018758 Sechium edule HOM05D005413 ORTHO05D006536 8.0e-25 118.6 165 41.8
CDE07G0886 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 3.0e-24 116.7 278 34.2
THA.LOC104810942 Tarenaya hassleriana HOM05D001091 ORTHO05D001020 8.8e-24 115.2 191 38.2
SGA_v2.0_scaffold22G09835 Striga asiatica HOM05D005413 ORTHO05D006536 6.3e-22 109.0 179 39.7
Carub.0006s1968 Capsella rubella HOM05D005413 ORTHO05D006536 8.3e-22 108.6 267 31.5
AL6G33000 Arabidopsis lyrata HOM05D005413 ORTHO05D006536 1.8e-21 107.5 268 32.5
Aa31LG1G13390 Aethionema arabicum HOM05D005413 ORTHO05D006536 2.4e-21 107.1 267 30.7
AT5G22040 Arabidopsis thaliana HOM05D005413 ORTHO05D006536 2.4e-21 107.1 262 31.7
SalBow6G6902 Salvia bowleyana HOM05D005413 ORTHO05D006536 5.4e-21 105.9 226 34.1
BcaB01g04747 Brassica carinata HOM05D005413 ORTHO05D006536 2.0e-20 104.0 244 33.2
THA.LOC104815083 Tarenaya hassleriana HOM05D005413 ORTHO05D006536 5.0e-19 99.4 259 31.3
Cpa.g.sc33.125 Carica papaya HOM05D005413 ORTHO05D006536 2.6e-15 87.0 93 52.7
Oeu029208.1 Olea europaea HOM05D005413 ORTHO05D006536 9.8e-15 85.1 76 52.6
Dinv03808 Davidia involucrata HOM05D005413 ORTHO05D006536 1.1e-13 81.6 103 46.6
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 2.4e-13 80.5 222 31.5
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 3.1e-13 80.1 236 28.4
Hma1.2p1_0298F.1_g117400 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 8.6e-11 72.0 121 38.0
PGR044G1324 Punica granatum HOM05D003044 ORTHO05D001869 2.8e-09 67.0 69 49.3
SMO236G0022 Selaginella moellendorffii HOM05D017472 ORTHO05D006688 2.3e-08 63.9 117 41.0
BcaB05g22753 Brassica carinata HOM05D005413 ORTHO05D006536 5.7e-07 59.3 53 54.7
CBR_g31172 Chara braunii HOM05D005852 ORTHO05D006688 7.5e-07 58.9 71 45.1


User provided reference genes

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