Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa010478 Carpinus fangiana HOM05D004067 ORTHO05D004827 7.9e-48 193.4 92 100.0
Cfa008606 Carpinus fangiana HOM05D004067 ORTHO05D004827 3.6e-24 114.8 61 90.2
Haze_11008 Corylus avellana HOM05D004067 ORTHO05D004827 1.0e-23 113.2 66 83.3
CiPaw.05G249400 Carya illinoinensis HOM05D004067 ORTHO05D004827 1.2e-22 109.8 66 81.8
Manes.12G111400 Manihot esculenta HOM05D004067 ORTHO05D004827 5.4e-20 100.9 61 78.7
Prupe.1G324200 Prunus persica HOM05D004067 ORTHO05D004827 7.0e-20 100.5 66 72.7
Dinv07642 Davidia involucrata HOM05D004067 ORTHO05D004827 2.7e-19 98.6 67 65.7
Dinv12988 Davidia involucrata HOM05D004067 ORTHO05D004827 2.7e-19 98.6 67 65.7
Potri.001G156300 Populus trichocarpa HOM05D004067 ORTHO05D004827 3.5e-19 98.2 66 72.7
CANSAT35G0597 Cannabis sativa HOM05D004067 ORTHO05D004827 4.5e-19 97.8 68 69.1
Dinv12989 Davidia involucrata HOM05D004067 ORTHO05D004827 5.9e-19 97.4 67 65.7
Atru.chr11.1779 Acer truncatum HOM05D004067 ORTHO05D004827 1.0e-18 96.7 69 71.0
GSVIVG01011761001 Vitis vinifera HOM05D004067 ORTHO05D004827 1.0e-18 96.7 66 69.7
Glyma.09G118400 Glycine max HOM05D004067 ORTHO05D004827 1.7e-18 95.9 61 72.1
MD16G1028500 Malus domestica HOM05D004067 ORTHO05D004827 2.2e-18 95.5 66 71.2
FvH4_4g32390 Fragaria vesca HOM05D004067 ORTHO05D004827 2.9e-18 95.1 66 68.2
FAN12G3660 Fragaria x ananassa HOM05D004067 ORTHO05D004827 2.9e-18 95.1 66 68.2
FAN17G2802 Fragaria x ananassa HOM05D004067 ORTHO05D004827 2.9e-18 95.1 66 68.2
FAN22G1587 Fragaria x ananassa HOM05D004067 ORTHO05D004827 2.9e-18 95.1 66 68.2
PGR119G1546 Punica granatum HOM05D004067 ORTHO05D004827 2.9e-18 95.1 58 75.9
Actinidia14967 Actinidia chinensis HOM05D004067 ORTHO05D004827 3.8e-18 94.7 66 63.6
CANSAT11G0808 Cannabis sativa HOM05D004067 ORTHO05D004827 6.5e-18 94.0 66 68.2
Manes.12G111500 Manihot esculenta HOM05D004067 ORTHO05D004827 6.5e-18 94.0 61 75.4
Nn2g15268 Nelumbo nucifera HOM05D004067 ORTHO05D004827 8.5e-18 93.6 66 68.2
Ca_12604_v3 Cicer arietinum L. HOM05D004067 ORTHO05D004827 1.1e-17 93.2 67 70.1
Ca_25714_v3 Cicer arietinum L. HOM05D004067 ORTHO05D004827 1.1e-17 93.2 67 70.1
FAN07G2052 Fragaria x ananassa HOM05D004067 ORTHO05D004827 1.1e-17 93.2 66 66.7
Actinidia36670 Actinidia chinensis HOM05D004067 ORTHO05D004827 1.5e-17 92.8 66 63.6
Psat0s8196g0040 Pisum sativum HOM05D004067 ORTHO05D004827 1.9e-17 92.4 67 70.1
Psat0s1827g0080 Pisum sativum HOM05D004067 ORTHO05D004827 2.5e-17 92.0 67 70.1
Psat0s2696g0040 Pisum sativum HOM05D004067 ORTHO05D004827 2.5e-17 92.0 67 70.1
Psat0s2696g0240 Pisum sativum HOM05D004067 ORTHO05D004827 2.5e-17 92.0 67 70.1
Psat0s4857g0040 Pisum sativum HOM05D004067 ORTHO05D004827 2.5e-17 92.0 67 70.1
Psat0s6339g0160 Pisum sativum HOM05D004067 ORTHO05D004827 2.5e-17 92.0 67 70.1
Nn3g18214 Nelumbo nucifera HOM05D004067 ORTHO05D004827 1.2e-16 89.7 66 66.7
Lj2g0007524 Lotus japonicus HOM05D004067 ORTHO05D004827 1.6e-16 89.4 67 68.7
PSO478G1363 Papaver somniferum HOM05D004067 ORTHO05D004827 1.6e-16 89.4 61 67.2
QL01p001776 Quercus lobata HOM05D004067 ORTHO05D004827 1.6e-16 89.4 66 63.6
Cpa.g.sc65.131 Carica papaya HOM05D004067 ORTHO05D004827 2.1e-16 89.0 68 69.1
Eucgr.H00672 Eucalyptus grandis HOM05D004067 ORTHO05D004827 2.1e-16 89.0 63 69.8
Lj6A746T53 Lonicera japonica HOM05D004067 ORTHO05D004827 2.1e-16 89.0 66 63.6
PSO017G4920 Papaver somniferum HOM05D004067 ORTHO05D004827 2.1e-16 89.0 61 67.2
Psat0s2696g0160 Pisum sativum HOM05D004067 ORTHO05D004827 2.1e-16 89.0 67 68.7
Psat0s4857g0120 Pisum sativum HOM05D004067 ORTHO05D004827 2.1e-16 89.0 67 68.7
Ciclev10015653m.g Citrus clementina HOM05D004067 ORTHO05D004827 3.6e-16 88.2 68 67.6
Atru.chr11.1199 Acer truncatum HOM05D004067 ORTHO05D004827 4.7e-16 87.8 68 66.2
COL.COLO4_20478 Corchorus olitorius HOM05D004067 ORTHO05D004827 4.7e-16 87.8 63 71.4
Medtr1g030760 Medicago truncatula HOM05D004067 ORTHO05D004827 4.7e-16 87.8 66 62.1
Potri.006G111600 Populus trichocarpa HOM05D004067 ORTHO05D004827 4.7e-16 87.8 66 68.2
Atru.chr11.1192 Acer truncatum HOM05D004067 ORTHO05D004827 6.1e-16 87.4 68 66.2
CSS0042578 Camellia sinensis var. sinensis HOM05D004067 ORTHO05D004827 6.1e-16 87.4 66 60.6
Duzib248G1046 Durio zibethinus HOM05D004067 ORTHO05D004827 6.1e-16 87.4 69 65.2
Sc04g0005490 Simmondsia chinensis HOM05D004067 ORTHO05D004827 6.1e-16 87.4 61 65.6
Duzib251G0172 Durio zibethinus HOM05D004067 ORTHO05D004827 8.0e-16 87.0 68 66.2
Lj3P873T10 Lonicera japonica HOM05D004067 ORTHO05D004827 8.0e-16 87.0 66 59.1
Lalb_Chr10g0096231 Lupinus albus HOM05D004067 ORTHO05D004827 8.0e-16 87.0 66 65.2
TPR.G36928 Trifolium pratense HOM05D004067 ORTHO05D004827 8.0e-16 87.0 62 69.4
TAR627G0408 Trochodendron aralioides HOM05D004067 ORTHO05D004827 8.0e-16 87.0 66 63.6
Rhsim09G0097800 Rhododendron simsii HOM05D004067 ORTHO05D004827 1.0e-15 86.7 61 63.9
VMungo1309G2882 Vigna mungo HOM05D004067 ORTHO05D004827 1.0e-15 86.7 67 64.2
Medtr6g021910 Medicago truncatula HOM05D004067 ORTHO05D004827 1.4e-15 86.3 72 62.5
TPR.G21639 Trifolium pratense HOM05D004067 ORTHO05D004827 1.4e-15 86.3 68 63.2
Hma1.2p1_0346F.1_g131330 Hydrangea macrophylla HOM05D004067 ORTHO05D004827 1.8e-15 85.9 61 62.3
Hma1.2p1_0346F.1_g131336 Hydrangea macrophylla HOM05D004067 ORTHO05D004827 1.8e-15 85.9 61 62.3
Psat0s2696g0200 Pisum sativum HOM05D004067 ORTHO05D004827 2.3e-15 85.5 67 65.7
BcaB07g30747 Brassica carinata HOM05D004067 ORTHO05D004827 4.0e-15 84.7 69 65.2
Phvul.009G073100 Phaseolus vulgaris HOM05D004067 ORTHO05D004827 4.0e-15 84.7 66 63.6
TPR.G39266 Trifolium pratense HOM05D004067 ORTHO05D004827 4.0e-15 84.7 62 67.7
Psat0s10301g0080 Pisum sativum HOM05D004067 ORTHO05D004827 5.2e-15 84.3 67 65.7
TWI81G0187 Tripterygium wilfordii HOM05D004067 ORTHO05D004827 5.2e-15 84.3 66 63.6
Lalb_Chr01g0007191 Lupinus albus HOM05D004067 ORTHO05D004827 8.8e-15 83.6 66 62.1
TAR627G0040 Trochodendron aralioides HOM05D004067 ORTHO05D004827 8.8e-15 83.6 62 66.1
TAR629G0314 Trochodendron aralioides HOM05D004067 ORTHO05D004827 1.2e-14 83.2 66 60.6
Sabra06G0086800 Salix brachista HOM05D004067 ORTHO05D004827 1.5e-14 82.8 66 65.2
CSS0041256 Camellia sinensis var. sinensis HOM05D004067 ORTHO05D004827 2.6e-14 82.0 58 62.1
Carub.0005s0037 Capsella rubella HOM05D004067 ORTHO05D004827 2.6e-14 82.0 64 64.1
Gohir.A01G152600 Gossypium hirsutum HOM05D004067 ORTHO05D004827 2.6e-14 82.0 69 62.3
THA.LOC104805062 Tarenaya hassleriana HOM05D004067 ORTHO05D004827 2.6e-14 82.0 70 58.6
Gorai.002G179700 Gossypium raimondii HOM05D004067 ORTHO05D004827 3.4e-14 81.6 69 62.3
Thecc.02G281200 Theobroma cacao HOM05D004067 ORTHO05D004827 3.4e-14 81.6 68 61.8
Gohir.D01G145500 Gossypium hirsutum HOM05D004067 ORTHO05D004827 4.4e-14 81.3 69 62.3
Nitab4.5_0001832g0050 Nicotiana tabacum HOM05D004067 ORTHO05D004827 4.4e-14 81.3 61 62.3
AL5G10370 Arabidopsis lyrata HOM05D004067 ORTHO05D004827 5.7e-14 80.9 69 60.9
BcaC04g21591 Brassica carinata HOM05D004067 ORTHO05D004827 7.5e-14 80.5 69 60.9
C09p30090 Brassica napus HOM05D004067 ORTHO05D004827 7.5e-14 80.5 69 60.9
BolC9t55873H Brassica oleracea HOM05D004067 ORTHO05D004827 7.5e-14 80.5 69 60.9
A09p23340 Brassica napus HOM05D004067 ORTHO05D004827 9.8e-14 80.1 69 60.9
AT2G01410 Arabidopsis thaliana HOM05D004067 ORTHO05D004827 1.3e-13 79.7 69 59.4
BraA09t37935Z Brassica rapa HOM05D004067 ORTHO05D004827 1.7e-13 79.3 69 60.9
Thhalv10001208m.g Eutrema salsugineum HOM05D004067 ORTHO05D004827 1.7e-13 79.3 74 58.1
Solyc04g007660.1 Solanum lycopersicum HOM05D004067 ORTHO05D004827 1.7e-13 79.3 61 59.0
Sopen04g002750 Solanum pennellii HOM05D004067 ORTHO05D004827 1.7e-13 79.3 61 60.7
PGSC0003DMG400005957 Solanum tuberosum HOM05D004067 ORTHO05D004827 2.2e-13 79.0 61 57.4
Sp2g12840 Schrenkiella parvula HOM05D004067 ORTHO05D004827 2.8e-13 78.6 69 60.9
THA.LOC104824143 Tarenaya hassleriana HOM05D004067 ORTHO05D004827 2.8e-13 78.6 64 64.1
Aa31LG2G8540 Aethionema arabicum HOM05D004067 ORTHO05D004827 3.7e-13 78.2 69 59.4
BcaC06g34181 Brassica carinata HOM05D004067 ORTHO05D004827 4.9e-13 77.8 64 62.5
BcaC06g34189 Brassica carinata HOM05D004067 ORTHO05D004827 4.9e-13 77.8 64 62.5
C07p31800 Brassica napus HOM05D004067 ORTHO05D004827 4.9e-13 77.8 64 62.5
BolC7t43720H Brassica oleracea HOM05D004067 ORTHO05D004827 4.9e-13 77.8 64 62.5
CARHR143920 Cardamine hirsuta HOM05D004067 ORTHO05D004827 4.9e-13 77.8 69 58.0
CsaV3_5G013550 Cucumis sativus L. HOM05D004067 ORTHO05D004827 4.9e-13 77.8 66 56.1
CsaV3_UNG236440 Cucumis sativus L. HOM05D004067 ORTHO05D004827 4.9e-13 77.8 66 56.1
Nitab4.5_0007576g0010 Nicotiana tabacum HOM05D004067 ORTHO05D004827 6.3e-13 77.4 61 60.7
PGSC0003DMG400030500 Solanum tuberosum HOM05D004067 ORTHO05D004827 6.3e-13 77.4 61 55.7
ECA234G3105 Erigeron canadensis HOM05D004067 ORTHO05D004827 8.3e-13 77.0 66 59.1
Aqoxy5G03134 Aquilegia oxysepala HOM05D004067 ORTHO05D004827 1.1e-12 76.6 74 56.8
MELO3C018333.2 Cucumis melo HOM05D004067 ORTHO05D004827 1.1e-12 76.6 66 54.5
Sed0006623 Sechium edule HOM05D004067 ORTHO05D004827 1.1e-12 76.6 81 53.1
BcaC06g31313 Brassica carinata HOM05D004067 ORTHO05D004827 1.4e-12 76.3 64 62.5
Nitab4.5_0000742g0040 Nicotiana tabacum HOM05D004067 ORTHO05D004827 1.4e-12 76.3 61 54.1
arahy.Tifrunner.gnm1.ann1.KUY2JB Arachis hypogaea HOM05D004067 ORTHO05D004827 2.4e-12 75.5 61 65.6
arahy.Tifrunner.gnm1.ann1.Z6YRHE Arachis hypogaea HOM05D004067 ORTHO05D004827 2.4e-12 75.5 61 65.6
Cc02_g26910 Coffea canephora HOM05D004067 ORTHO05D004827 2.4e-12 75.5 58 56.9
Oeu059504.1 Olea europaea HOM05D004067 ORTHO05D004827 3.1e-12 75.1 63 55.6
DCAR_007292 Daucus carota HOM05D004067 ORTHO05D004827 7.0e-12 73.9 61 59.0
VMungo1383G0958 Vigna mungo HOM05D004067 ORTHO05D004827 7.0e-12 73.9 88 52.3
CDE11G1068 Ceratophyllum demersum HOM05D006533 ORTHO05D004827 9.2e-12 73.6 66 53.0
ClCG07G006240 Citrullus lanatus HOM05D004067 ORTHO05D004827 9.2e-12 73.6 66 53.0
Ca_07073_v3 Cicer arietinum L. HOM05D004067 ORTHO05D004827 1.2e-11 73.2 61 62.3
MSTRG.2173 Avicennia marina HOM05D004067 ORTHO05D004827 2.0e-11 72.4 58 58.6
SHI04655 Sapria himalayana HOM05D004067 ORTHO05D004827 2.0e-11 72.4 67 56.7
Lj1g0003353 Lotus japonicus HOM05D004067 ORTHO05D004827 2.7e-11 72.0 64 62.5
Psat3g190280 Pisum sativum HOM05D004067 ORTHO05D004827 3.5e-11 71.6 61 62.3
Lsat_1_v5_gn_4_14640 Lactuca sativa HOM05D004067 ORTHO05D004827 4.5e-11 71.2 66 54.5
Medtr7g020840 Medicago truncatula HOM05D004067 ORTHO05D004827 5.9e-11 70.9 62 61.3
Lalb_Chr25g0280641 Lupinus albus HOM05D004067 ORTHO05D004827 1.0e-10 70.1 61 59.0
HanXRQChr12g0377591 Helianthus annuus HOM05D004067 ORTHO05D004827 1.3e-10 69.7 61 54.1
Psat6g042640 Pisum sativum HOM05D004067 ORTHO05D004827 1.3e-10 69.7 48 66.7
Phvul.008G019900 Phaseolus vulgaris HOM05D004067 ORTHO05D004827 1.7e-10 69.3 70 55.7
MSTRG.13583 Avicennia marina HOM05D004067 ORTHO05D004827 2.3e-10 68.9 64 53.1
Migut.E00421 Erythranthe guttata HOM05D004067 ORTHO05D004827 2.3e-10 68.9 63 54.0
Sopen05g003980 Solanum pennellii HOM05D004067 ORTHO05D004827 1.1e-09 66.6 82 42.7
Glyma.08G257000 Glycine max HOM05D004067 ORTHO05D004827 4.3e-09 64.7 66 57.6
Ah.07g197270 Amaranthus hybridus HOM05D004067 ORTHO05D004827 5.6e-09 64.3 62 51.6
Medtr3g070770 Medicago truncatula HOM05D004067 ORTHO05D004827 9.5e-09 63.5 67 52.2
SEGI_06567 Sequoiadendron giganteum HOM05D004067 ORTHO05D004827 1.6e-08 62.8 62 45.2
AagrBONN_evm.TU.Sc2ySwM_344.2330 Anthoceros agrestis HOM05D004067 ORTHO05D004827 4.0e-07 58.2 61 45.9
Eucgr.L01715 Eucalyptus grandis HOM05D004067 ORTHO05D004827 3.4e-06 55.1 80 41.2
SMO340G0277 Selaginella moellendorffii HOM05D004067 ORTHO05D004827 4.4e-06 54.7 74 45.9


User provided reference genes

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