Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa010419 Carpinus fangiana HOM05D005417 ORTHO05D002591 2.4e-177 625.5 357 100.0
Haze_03369 Corylus avellana HOM05D005417 ORTHO05D002591 3.7e-109 399.1 267 90.3
QL09p051098 Quercus lobata HOM05D005417 ORTHO05D002591 4.2e-97 359.0 408 56.4
QL09p050923 Quercus lobata HOM05D005417 ORTHO05D002591 4.4e-94 349.0 408 55.4
CiPaw.13G049000 Carya illinoinensis HOM05D005417 ORTHO05D002591 2.8e-93 346.3 435 59.3
CiPaw.14G038800 Carya illinoinensis HOM05D005417 ORTHO05D002591 6.3e-85 318.5 433 54.7
Prupe.8G197900 Prunus persica HOM05D005417 ORTHO05D002591 7.0e-84 315.1 438 51.6
Dinv19167 Davidia involucrata HOM05D005417 ORTHO05D002591 2.5e-73 280.0 375 49.3
Manes.12G047700 Manihot esculenta HOM05D005417 ORTHO05D002591 6.4e-69 265.4 399 47.1
CSS0019537 Camellia sinensis var. sinensis HOM05D005417 ORTHO05D002591 4.1e-68 262.7 420 44.5
Potri.002G246400 Populus trichocarpa HOM05D005417 ORTHO05D002591 2.3e-66 256.9 451 47.5
Thecc.01G219200 Theobroma cacao HOM05D005417 ORTHO05D002591 4.3e-65 252.7 441 49.2
TWI75G1481 Tripterygium wilfordii HOM05D005417 ORTHO05D002591 1.2e-64 251.1 418 45.0
MD05G1170600 Malus domestica HOM05D005417 ORTHO05D002591 1.2e-62 244.6 421 45.1
Manes.13G049800 Manihot esculenta HOM05D005417 ORTHO05D002591 1.5e-62 244.2 421 46.1
Sabra02G0187500 Salix brachista HOM05D005417 ORTHO05D002591 7.5e-62 241.9 463 44.9
Dinv12644 Davidia involucrata HOM05D005417 ORTHO05D002591 2.2e-61 240.4 395 49.9
Duzib211G0292 Durio zibethinus HOM05D005417 ORTHO05D002591 2.1e-59 233.8 437 44.6
Gohir.D11G145866 Gossypium hirsutum HOM05D005417 ORTHO05D002591 6.6e-58 228.8 438 42.9
TWI18G1450 Tripterygium wilfordii HOM05D005417 ORTHO05D002591 6.6e-58 228.8 417 47.0
Psat3g149440 Pisum sativum HOM05D005417 ORTHO05D002591 8.6e-58 228.4 441 39.9
Gorai.007G156400 Gossypium raimondii HOM05D005417 ORTHO05D002591 2.5e-57 226.9 438 42.5
Actinidia39427 Actinidia chinensis HOM05D005417 ORTHO05D002591 1.6e-56 224.2 393 47.8
Gohir.A11G139800 Gossypium hirsutum HOM05D005417 ORTHO05D002591 2.1e-56 223.8 435 41.6
TAR365G0760 Trochodendron aralioides HOM05D005417 ORTHO05D002591 3.1e-55 219.9 471 41.8
Lj1g0009273 Lotus japonicus HOM05D005417 ORTHO05D002591 1.5e-54 217.6 429 43.1
Medtr7g055560 Medicago truncatula HOM05D005417 ORTHO05D002591 9.9e-54 214.9 434 43.5
Medtr7g055747 Medicago truncatula HOM05D005417 ORTHO05D002591 9.9e-54 214.9 434 43.5
COL.COLO4_08651 Corchorus olitorius HOM05D005417 ORTHO05D002591 1.4e-52 211.1 455 41.8
MD10G1158800 Malus domestica HOM05D005417 ORTHO05D002591 1.6e-51 207.6 424 38.0
VMungo1383G0191 Vigna mungo HOM05D005417 ORTHO05D002591 2.1e-51 207.2 467 38.5
Nitab4.5_0001161g0100 Nicotiana tabacum HOM05D005417 ORTHO05D002591 6.0e-51 205.7 405 45.4
Nitab4.5_0002985g0020 Nicotiana tabacum HOM05D005417 ORTHO05D002591 6.0e-51 205.7 353 41.9
Rhsim13G0048000 Rhododendron simsii HOM05D005417 ORTHO05D002591 7.8e-51 205.3 372 46.8
Peaxi162Scf00372g00102 Petunia axillaris HOM05D005417 ORTHO05D002591 1.0e-50 204.9 383 43.6
Phvul.008G132000 Phaseolus vulgaris HOM05D005417 ORTHO05D002591 2.3e-50 203.8 482 37.8
arahy.Tifrunner.gnm1.ann1.K8JSLF Arachis hypogaea HOM05D005417 ORTHO05D002591 3.9e-50 203.0 373 40.2
Nn1g07983 Nelumbo nucifera HOM05D005417 ORTHO05D002591 1.1e-49 201.4 404 43.3
Nitab4.5_0002641g0180 Nicotiana tabacum HOM05D005417 ORTHO05D002591 1.1e-49 201.4 354 44.9
Glyma.08G348101 Glycine max HOM05D005417 ORTHO05D002591 2.5e-49 200.3 515 39.0
Oeu051530.1 Olea europaea HOM05D005417 ORTHO05D002591 2.5e-49 200.3 415 42.2
Sopen06g002670 Solanum pennellii HOM05D005417 ORTHO05D002591 2.5e-49 200.3 351 45.3
Rhsim01G0253400 Rhododendron simsii HOM05D005417 ORTHO05D002591 1.2e-48 198.0 419 40.3
vmacro02785 Vaccinium macrocarpon HOM05D005417 ORTHO05D002591 3.6e-48 196.4 409 40.8
Eucgr.K02134 Eucalyptus grandis HOM05D005417 ORTHO05D002591 3.1e-47 193.4 441 42.4
PGSC0003DMG400022034 Solanum tuberosum HOM05D005417 ORTHO05D002591 5.2e-47 192.6 351 40.5
Glyma.18G159700 Glycine max HOM05D005417 ORTHO05D002591 6.9e-47 192.2 516 38.8
Oeu007785.1 Olea europaea HOM05D005417 ORTHO05D002591 2.6e-46 190.3 377 40.6
Solyc06g007790.1 Solanum lycopersicum HOM05D005417 ORTHO05D002591 3.4e-46 189.9 351 44.2
Ciclev10024373m.g Citrus clementina HOM05D005417 ORTHO05D002591 4.4e-46 189.5 436 44.5
FAN15G1498 Fragaria x ananassa HOM05D005417 ORTHO05D002591 4.4e-46 189.5 575 34.6
RcHm_v2.0_Chr6g0284001 Rosa chinensis HOM05D005417 ORTHO05D002591 1.7e-45 187.6 581 34.6
Gohir.A07G092900 Gossypium hirsutum HOM05D005417 ORTHO05D002591 4.2e-44 183.0 392 44.6
Sp3g22720 Schrenkiella parvula HOM05D005417 ORTHO05D002591 7.1e-44 182.2 399 40.4
BcaC06g35784 Brassica carinata HOM05D005417 ORTHO05D002591 1.2e-43 181.4 409 41.3
BolC7t41558H Brassica oleracea HOM05D005417 ORTHO05D002591 1.2e-43 181.4 409 41.3
A07p07230 Brassica napus HOM05D005417 ORTHO05D002591 2.1e-43 180.6 410 39.0
FvH4_2g18490 Fragaria vesca HOM05D005417 ORTHO05D002591 2.1e-43 180.6 574 32.8
C07p10920 Brassica napus HOM05D005417 ORTHO05D002591 6.0e-43 179.1 409 41.1
FAN24G0779 Fragaria x ananassa HOM05D005417 ORTHO05D002591 6.0e-43 179.1 582 32.1
Gorai.001G188400 Gossypium raimondii HOM05D005417 ORTHO05D002591 6.0e-43 179.1 390 40.3
BraA07t28509Z Brassica rapa HOM05D005417 ORTHO05D002591 1.7e-42 177.6 412 38.8
AT3G25130 Arabidopsis thaliana HOM05D005417 ORTHO05D002591 6.6e-42 175.6 419 39.6
Sc05g0001930 Simmondsia chinensis HOM05D005417 ORTHO05D002591 1.5e-41 174.5 393 41.2
CAN.G181.55 Capsicum annuum HOM05D005417 ORTHO05D002591 1.9e-41 174.1 352 43.8
FAN27G1148 Fragaria x ananassa HOM05D005417 ORTHO05D002591 1.9e-41 174.1 574 32.4
Gohir.A07G161200 Gossypium hirsutum HOM05D005417 ORTHO05D002591 2.5e-41 173.7 376 43.1
SGA_v2.0_scaffold156G37265 Striga asiatica HOM05D005417 ORTHO05D002591 2.5e-41 173.7 378 43.4
Cpa.g.sc34.103 Carica papaya HOM05D005417 ORTHO05D002591 3.3e-41 173.3 426 41.8
CAN.G800.6 Capsicum annuum HOM05D005417 ORTHO05D002591 5.6e-41 172.6 367 40.9
Nn3g20048 Nelumbo nucifera HOM05D005417 ORTHO05D002591 9.6e-41 171.8 396 42.4
Nn3g20049 Nelumbo nucifera HOM05D005417 ORTHO05D002591 9.6e-41 171.8 396 42.4
PGR083G2240 Punica granatum HOM05D005417 ORTHO05D002591 9.6e-41 171.8 375 36.8
AL3G40820 Arabidopsis lyrata HOM05D005417 ORTHO05D002591 6.2e-40 169.1 407 38.8
PGSC0003DMG400017495 Solanum tuberosum HOM05D005417 ORTHO05D002591 1.1e-39 168.3 379 42.2
Gohir.D07G097400 Gossypium hirsutum HOM05D005417 ORTHO05D002591 1.4e-39 167.9 393 43.3
Carub.0003s2546 Capsella rubella HOM05D005417 ORTHO05D002591 4.0e-39 166.4 392 41.3
Lsat_1_v5_gn_9_14981 Lactuca sativa HOM05D005417 ORTHO05D002591 9.0e-39 165.2 408 40.2
ClCG07G002110 Citrullus lanatus HOM05D005417 ORTHO05D002591 2.0e-38 164.1 287 42.5
Aa31sc95G70 Aethionema arabicum HOM05D005417 ORTHO05D002591 2.6e-38 163.7 374 40.4
Lalb_Chr03g0041401 Lupinus albus HOM05D005417 ORTHO05D002591 3.4e-38 163.3 133 62.4
EL10Ac7g17913 Beta vulgaris HOM05D005417 ORTHO05D002591 4.5e-38 162.9 389 39.3
Atru.chr6.1429 Acer truncatum HOM05D005417 ORTHO05D002591 9.9e-38 161.8 389 40.4
Solyc09g059550.1 Solanum lycopersicum HOM05D005417 ORTHO05D002591 9.9e-38 161.8 369 40.1
Ca_03471_v3 Cicer arietinum L. HOM05D005417 ORTHO05D002591 3.8e-37 159.8 241 46.9
Cc01_g16680 Coffea canephora HOM05D005417 ORTHO05D002591 8.4e-37 158.7 463 36.9
PSO063G3464 Papaver somniferum HOM05D005417 ORTHO05D002591 8.4e-37 158.7 408 34.8
MSTRG.18834 Avicennia marina HOM05D005417 ORTHO05D002591 1.1e-36 158.3 447 38.0
DCAR_012672 Daucus carota HOM05D005417 ORTHO05D002591 1.4e-36 157.9 418 36.8
Peaxi162Scf00068g00216 Petunia axillaris HOM05D005417 ORTHO05D002591 1.9e-36 157.5 264 42.8
Sopen09g022730 Solanum pennellii HOM05D005417 ORTHO05D002591 2.4e-36 157.1 367 41.4
vmacro14737 Vaccinium macrocarpon HOM05D005417 ORTHO05D002591 5.4e-36 156.0 146 61.0
TPR.G976 Trifolium pratense HOM05D005417 ORTHO05D002591 2.7e-35 153.7 377 36.6
SalBow6G1220 Salvia bowleyana HOM05D005417 ORTHO05D002591 3.0e-34 150.2 377 39.0
Nitab4.5_0003656g0060 Nicotiana tabacum HOM05D005417 ORTHO05D002591 5.1e-34 149.4 283 40.3
MELO3C022719.2 Cucumis melo HOM05D005417 ORTHO05D002591 1.1e-33 148.3 261 42.9
Gorai.001G104900 Gossypium raimondii HOM05D005417 ORTHO05D002591 1.5e-33 147.9 383 42.0
ECA248G2280 Erigeron canadensis HOM05D005417 ORTHO05D002591 7.4e-33 145.6 332 38.0
PSO017G4959 Papaver somniferum HOM05D005417 ORTHO05D002591 7.4e-33 145.6 415 37.1
CARHR101450 Cardamine hirsuta HOM05D005417 ORTHO05D002591 3.7e-32 143.3 315 37.1
BcaB06g26721 Brassica carinata HOM05D005417 ORTHO05D002591 4.8e-32 142.9 352 38.4
ECA247G2945 Erigeron canadensis HOM05D005417 ORTHO05D002591 1.1e-31 141.7 282 38.7
TAR636G0419 Trochodendron aralioides HOM05D005417 ORTHO05D002591 1.2e-30 138.3 328 35.7
Aqoxy2G03972 Aquilegia oxysepala HOM05D005417 ORTHO05D002591 3.4e-30 136.7 298 33.9
Migut.D02505 Erythranthe guttata HOM05D005417 ORTHO05D002591 1.1e-28 131.7 481 31.0
THA.LOC104804626 Tarenaya hassleriana HOM05D005417 ORTHO05D002591 1.1e-28 131.7 452 36.7
MBI11_g07415_MAGBIO Magnolia biondii HOM05D005417 ORTHO05D002591 1.9e-28 131.0 346 35.5
HanXRQChr10g0279531 Helianthus annuus HOM05D005417 ORTHO05D002591 9.3e-28 128.6 190 48.9
MSTRG.20970 Avicennia marina HOM05D005417 ORTHO05D002591 1.6e-27 127.9 147 55.1
Sed0010610 Sechium edule HOM05D005417 ORTHO05D002591 3.5e-27 126.7 480 33.8
HanXRQChr01g0015481 Helianthus annuus HOM05D005417 ORTHO05D002591 1.5e-25 121.3 189 45.0
Gohir.D07G164700 Gossypium hirsutum HOM05D005417 ORTHO05D002591 3.3e-25 120.2 365 37.3
Nitab4.5_0013864g0020 Nicotiana tabacum HOM05D005417 ORTHO05D002591 3.3e-25 120.2 196 40.3
Nitab4.5_0003020g0050 Nicotiana tabacum HOM05D005417 ORTHO05D002591 1.1e-23 115.2 197 40.1
MBI07_g27364_MAGBIO Magnolia biondii HOM05D005417 ORTHO05D002591 2.4e-23 114.0 125 60.0
PGR044G1095 Punica granatum HOM05D005417 ORTHO05D002591 5.3e-23 112.8 421 33.0
Peaxi162Scf01312g00003 Petunia axillaris HOM05D005417 ORTHO05D002591 1.2e-22 111.7 123 48.8
Solyc06g083330.2 Solanum lycopersicum HOM05D005417 ORTHO05D002591 1.7e-21 107.8 119 46.2
PGSC0003DMG400020102 Solanum tuberosum HOM05D005417 ORTHO05D002591 3.8e-21 106.7 119 46.2
SGA_v2.0_scaffold3G01638 Striga asiatica HOM05D005417 ORTHO05D002591 1.1e-20 105.1 363 32.8
Sopen06g034710 Solanum pennellii HOM05D005417 ORTHO05D002591 5.5e-20 102.8 119 43.7
AUR62016544 Chenopodium quinoa HOM05D005417 ORTHO05D002591 1.2e-19 101.7 198 39.9
ATR0561G108 Amborella trichopoda HOM05D005417 ORTHO05D002591 1.1e-17 95.1 383 27.9
SalBow5G5435 Salvia bowleyana HOM05D005417 ORTHO05D002591 4.3e-17 93.2 130 46.2
HPP92_009946 Vanilla planifolia HOM05D005417 ORTHO05D002591 6.3e-16 89.4 354 33.9
TPR.G6388 Trifolium pratense HOM05D005417 ORTHO05D002591 8.2e-16 89.0 64 64.1
unitig_749.g13592 Utricularia gibba HOM05D005417 ORTHO05D002591 1.1e-15 88.6 341 31.1
unitig_899.g15407 Utricularia gibba HOM05D005417 ORTHO05D002591 1.4e-15 88.2 114 50.9
AUR62001135 Chenopodium quinoa HOM05D005417 ORTHO05D002591 1.1e-12 78.6 184 35.9
Lj5g0025661 Lotus japonicus HOM05D005417 ORTHO05D002591 3.2e-12 77.0 138 42.8
Zm00001eb090480 Zea mays HOM05D005417 ORTHO05D002591 1.6e-11 74.7 274 31.8
Os11g0458100 Oryza sativa ssp. japonica HOM05D005417 ORTHO05D002591 3.9e-10 70.1 151 41.1
ClCG09G008640 Citrullus lanatus HOM05D005417 ORTHO05D002591 1.7e-08 64.7 127 40.2
CDE05G3071 Ceratophyllum demersum HOM05D000186 ORTHO05D002329 2.2e-08 64.3 97 34.0
Duzib133G1381 Durio zibethinus HOM05D005417 ORTHO05D002591 2.8e-08 63.9 287 37.3
MELO3C021078.2 Cucumis melo HOM05D005417 ORTHO05D002591 5.3e-07 59.7 366 28.1


User provided reference genes

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