Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa010353 Carpinus fangiana HOM05D003293 ORTHO05D022256 3.9e-52 208.4 150 100.0
Haze_07768 Corylus avellana HOM05D003293 ORTHO05D005060 1.3e-26 123.6 67 89.6
Cfa019380 Carpinus fangiana HOM05D003293 ORTHO05D005060 1.4e-25 120.2 67 88.1
CiPaw.11G057700 Carya illinoinensis HOM05D003293 ORTHO05D005060 4.5e-24 115.2 67 80.6
QL04p093622 Quercus lobata HOM05D003293 ORTHO05D005060 2.5e-22 109.4 65 80.0
Migut.M01507 Erythranthe guttata HOM05D003293 ORTHO05D005060 1.5e-19 100.1 67 73.1
Oeu019711.2 Olea europaea HOM05D003293 ORTHO05D005060 5.7e-19 98.2 65 72.3
AL2G40080 Arabidopsis lyrata HOM05D003293 ORTHO05D005060 7.4e-19 97.8 65 75.4
Thhalv10018438m.g Eutrema salsugineum HOM05D003293 ORTHO05D005060 7.4e-19 97.8 65 75.4
Oeu033076.1 Olea europaea HOM05D003293 ORTHO05D005060 7.4e-19 97.8 65 70.8
BcaC08g47508 Brassica carinata HOM05D003293 ORTHO05D005060 1.3e-18 97.1 65 73.8
BcaC08g47510 Brassica carinata HOM05D003293 ORTHO05D005060 1.3e-18 97.1 65 73.8
A07p44530 Brassica napus HOM05D003293 ORTHO05D005060 1.3e-18 97.1 65 73.8
C06p53360 Brassica napus HOM05D003293 ORTHO05D005060 1.3e-18 97.1 65 73.8
BolC6t40353H Brassica oleracea HOM05D003293 ORTHO05D005060 1.3e-18 97.1 65 73.8
BraA07t31963Z Brassica rapa HOM05D003293 ORTHO05D005060 1.3e-18 97.1 65 73.8
ECA232G2754 Erigeron canadensis HOM05D003293 ORTHO05D005060 1.3e-18 97.1 65 70.8
ECA240G2653 Erigeron canadensis HOM05D003293 ORTHO05D005060 1.3e-18 97.1 65 70.8
ClCG09G022840 Citrullus lanatus HOM05D003293 ORTHO05D005060 1.6e-18 96.7 65 72.3
Potri.008G082800 Populus trichocarpa HOM05D003293 ORTHO05D005060 2.2e-18 96.3 65 73.8
Sc08g0001770 Simmondsia chinensis HOM05D003293 ORTHO05D005060 2.2e-18 96.3 65 69.2
CARHR073130 Cardamine hirsuta HOM05D003293 ORTHO05D005060 2.8e-18 95.9 65 73.8
HanXRQChr13g0420911 Helianthus annuus HOM05D003293 ORTHO05D005060 2.8e-18 95.9 64 71.9
Lsat_1_v5_gn_6_47480 Lactuca sativa HOM05D003293 ORTHO05D005060 2.8e-18 95.9 65 69.2
SalBow8G3872 Salvia bowleyana HOM05D003293 ORTHO05D005060 2.8e-18 95.9 65 70.8
SalBow8G4723 Salvia bowleyana HOM05D003293 ORTHO05D005060 2.8e-18 95.9 65 70.8
Sp5g34520 Schrenkiella parvula HOM05D003293 ORTHO05D005060 2.8e-18 95.9 65 73.8
Carub.0001s1609 Capsella rubella HOM05D003293 ORTHO05D005060 3.7e-18 95.5 65 70.8
AUR62032176 Chenopodium quinoa HOM05D003293 ORTHO05D005060 3.7e-18 95.5 65 70.8
CsaV3_7G023050 Cucumis sativus L. HOM05D003293 ORTHO05D005060 4.8e-18 95.1 65 70.8
FAN11G0148 Fragaria x ananassa HOM05D003293 ORTHO05D005060 4.8e-18 95.1 65 70.8
Lj3g0010257 Lotus japonicus HOM05D003293 ORTHO05D005060 4.8e-18 95.1 65 67.7
MBI02_g32629_MAGBIO Magnolia biondii HOM05D003293 ORTHO05D005060 4.8e-18 95.1 67 67.2
Manes.03G079800 Manihot esculenta HOM05D003293 ORTHO05D005060 4.8e-18 95.1 65 69.2
Prupe.4G129200 Prunus persica HOM05D003293 ORTHO05D005060 4.8e-18 95.1 65 69.2
THA.LOC104812383 Tarenaya hassleriana HOM05D003293 ORTHO05D005060 4.8e-18 95.1 65 70.8
Cfa018910 Carpinus fangiana HOM05D000001 ORTHO05D009995 6.3e-18 94.7 67 77.6
AUR62011946 Chenopodium quinoa HOM05D003293 ORTHO05D005060 6.3e-18 94.7 65 69.2
FvH4_3g14430 Fragaria vesca HOM05D003293 ORTHO05D005060 6.3e-18 94.7 65 70.8
FAN16G3527 Fragaria x ananassa HOM05D003293 ORTHO05D005060 6.3e-18 94.7 65 70.8
FAN25G2457 Fragaria x ananassa HOM05D003293 ORTHO05D005060 6.3e-18 94.7 65 70.8
AT1G79470 Arabidopsis thaliana HOM05D003293 ORTHO05D005060 8.2e-18 94.4 65 72.3
BcaB02g06613 Brassica carinata HOM05D003293 ORTHO05D005060 8.2e-18 94.4 65 70.8
BcaC05g25581 Brassica carinata HOM05D003293 ORTHO05D005060 8.2e-18 94.4 65 70.8
A06p12260 Brassica napus HOM05D003293 ORTHO05D005060 8.2e-18 94.4 65 70.8
C05p14510 Brassica napus HOM05D003293 ORTHO05D005060 8.2e-18 94.4 65 70.8
BolC5t30176H Brassica oleracea HOM05D003293 ORTHO05D005060 8.2e-18 94.4 65 70.8
BraA06t24394Z Brassica rapa HOM05D003293 ORTHO05D005060 8.2e-18 94.4 65 70.8
DCAR_016845 Daucus carota HOM05D003293 ORTHO05D005060 8.2e-18 94.4 65 69.2
Sabra08G0061300 Salix brachista HOM05D003293 ORTHO05D005060 8.2e-18 94.4 65 72.3
Sp1g14530 Schrenkiella parvula HOM05D003293 ORTHO05D005060 8.2e-18 94.4 65 69.2
AL1G28470 Arabidopsis lyrata HOM05D003293 ORTHO05D005060 1.1e-17 94.0 65 69.2
AT1G16350 Arabidopsis thaliana HOM05D003293 ORTHO05D005060 1.1e-17 94.0 65 69.2
Carub.0002s2633 Capsella rubella HOM05D003293 ORTHO05D005060 1.1e-17 94.0 65 72.3
HanXRQChr14g0433351 Helianthus annuus HOM05D003293 ORTHO05D005060 1.1e-17 94.0 65 69.2
Lsat_1_v5_gn_3_115940 Lactuca sativa HOM05D003293 ORTHO05D005060 1.1e-17 94.0 65 69.2
Phvul.005G048700 Phaseolus vulgaris HOM05D003293 ORTHO05D005060 1.1e-17 94.0 65 67.7
Aa31LG4G1560 Aethionema arabicum HOM05D003293 ORTHO05D005060 1.4e-17 93.6 65 67.7
Potri.010G173600 Populus trichocarpa HOM05D003293 ORTHO05D005060 1.4e-17 93.6 65 70.8
TPR.G5871 Trifolium pratense HOM05D003293 ORTHO05D005060 1.4e-17 93.6 65 64.6
TWI38G1632 Tripterygium wilfordii HOM05D003293 ORTHO05D005060 1.4e-17 93.6 66 68.2
EL10Ac2g03658 Beta vulgaris HOM05D003293 ORTHO05D005060 1.8e-17 93.2 65 69.2
Dinv42465 Davidia involucrata HOM05D003293 ORTHO05D005060 1.8e-17 93.2 65 67.7
Thhalv10007432m.g Eutrema salsugineum HOM05D003293 ORTHO05D005060 1.8e-17 93.2 65 67.7
Glyma.15G263100 Glycine max HOM05D003293 ORTHO05D005060 1.8e-17 93.2 65 67.7
MD05G1237000 Malus domestica HOM05D003293 ORTHO05D005060 1.8e-17 93.2 65 67.7
MD10G1213800 Malus domestica HOM05D003293 ORTHO05D005060 1.8e-17 93.2 65 67.7
TAR629G2219 Trochodendron aralioides HOM05D003293 ORTHO05D005060 1.8e-17 93.2 65 67.7
Aa31LG7G870 Aethionema arabicum HOM05D003293 ORTHO05D005060 2.4e-17 92.8 65 69.2
Ah.01g017820 Amaranthus hybridus HOM05D003293 ORTHO05D005060 2.4e-17 92.8 65 69.2
Glyma.08G164100 Glycine max HOM05D003293 ORTHO05D005060 2.4e-17 92.8 65 67.7
Peaxi162Scf00012g02522 Petunia axillaris HOM05D003293 ORTHO05D005060 2.4e-17 92.8 67 67.2
Psat3g088880 Pisum sativum HOM05D003293 ORTHO05D005060 2.4e-17 92.8 65 64.6
Sabra10G0133500 Salix brachista HOM05D003293 ORTHO05D005060 2.4e-17 92.8 65 69.2
SGA_v2.0_scaffold239G44013 Striga asiatica HOM05D003293 ORTHO05D005060 2.4e-17 92.8 65 66.2
TAR627G0458 Trochodendron aralioides HOM05D003293 ORTHO05D005060 2.4e-17 92.8 65 67.7
Ca_08263_v3 Cicer arietinum L. HOM05D003293 ORTHO05D005060 3.1e-17 92.4 65 64.6
Ciclev10004800m.g Citrus clementina HOM05D003293 ORTHO05D005060 3.1e-17 92.4 65 69.2
Nn2g15373 Nelumbo nucifera HOM05D003293 ORTHO05D005060 3.1e-17 92.4 65 67.7
VMungo1383G0635 Vigna mungo HOM05D003293 ORTHO05D022256 3.1e-17 92.4 65 63.1
CSS0010168 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D005060 4.1e-17 92.0 67 65.7
CSS0025898 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D005060 4.1e-17 92.0 67 65.7
CSS0030196 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D005060 4.1e-17 92.0 67 65.7
COL.COLO4_15126 Corchorus olitorius HOM05D003293 ORTHO05D005060 4.1e-17 92.0 65 67.7
FAN21G2700 Fragaria x ananassa HOM05D003293 ORTHO05D005060 4.1e-17 92.0 65 67.7
Hma1.2p1_0210F.1_g089470 Hydrangea macrophylla HOM05D003293 ORTHO05D005060 4.1e-17 92.0 65 66.2
Atru.chr1.64 Acer truncatum HOM05D003293 ORTHO05D005060 5.3e-17 91.7 65 69.2
Actinidia24661 Actinidia chinensis HOM05D003293 ORTHO05D005060 5.3e-17 91.7 65 66.2
Medtr7g085560 Medicago truncatula HOM05D003293 ORTHO05D005060 5.3e-17 91.7 65 63.1
RcHm_v2.0_Chr5g0023741 Rosa chinensis HOM05D003293 ORTHO05D005060 5.3e-17 91.7 65 67.7
COL.COLO4_18926 Corchorus olitorius HOM05D003293 ORTHO05D005060 6.9e-17 91.3 65 67.7
MELO3C012593.2 Cucumis melo HOM05D003293 ORTHO05D005060 6.9e-17 91.3 65 69.2
Duzib268G1306 Durio zibethinus HOM05D003293 ORTHO05D005060 6.9e-17 91.3 65 69.2
Hma1.2p1_2875F.1_g329750 Hydrangea macrophylla HOM05D003293 ORTHO05D005060 6.9e-17 91.3 65 66.2
Hund00106 Selenicereus undatus HOM05D003293 ORTHO05D005060 6.9e-17 91.3 65 67.7
Actinidia12755 Actinidia chinensis HOM05D003293 ORTHO05D005060 9.0e-17 90.9 65 66.2
CARHR016820 Cardamine hirsuta HOM05D003293 ORTHO05D005060 9.0e-17 90.9 65 66.2
CDE09G0953 Ceratophyllum demersum HOM05D003293 ORTHO05D005060 9.0e-17 90.9 65 66.2
AUR62036933 Chenopodium quinoa HOM05D003293 ORTHO05D005060 9.0e-17 90.9 65 66.2
COL.COLO4_09217 Corchorus olitorius HOM05D003293 ORTHO05D022256 9.0e-17 90.9 64 68.8
Sed0007161 Sechium edule HOM05D003293 ORTHO05D005060 9.0e-17 90.9 65 67.7
vmacro05416 Vaccinium macrocarpon HOM05D003293 ORTHO05D005060 9.0e-17 90.9 65 66.2
MD05G1237500 Malus domestica HOM05D003293 ORTHO05D005060 1.2e-16 90.5 65 66.2
Thecc.09G018800 Theobroma cacao HOM05D003293 ORTHO05D005060 1.2e-16 90.5 65 69.2
TWI59G0396 Tripterygium wilfordii HOM05D003293 ORTHO05D005060 1.2e-16 90.5 66 66.7
Lalb_Chr01g0015541 Lupinus albus HOM05D003293 ORTHO05D005060 1.5e-16 90.1 65 66.2
Rhsim03G0000200 Rhododendron simsii HOM05D003293 ORTHO05D005060 1.5e-16 90.1 65 66.2
arahy.Tifrunner.gnm1.ann1.12ZBK0 Arachis hypogaea HOM05D003293 ORTHO05D005060 2.0e-16 89.7 65 64.6
arahy.Tifrunner.gnm1.ann1.GYGU5R Arachis hypogaea HOM05D003293 ORTHO05D005060 2.0e-16 89.7 65 64.6
unitig_748.g7610 Utricularia gibba HOM05D003293 ORTHO05D005060 2.0e-16 89.7 65 67.7
Sopen10g030150 Solanum pennellii HOM05D003293 ORTHO05D005060 2.6e-16 89.4 67 64.2
PGSC0003DMG400008158 Solanum tuberosum HOM05D003293 ORTHO05D005060 2.6e-16 89.4 67 64.2
Gohir.A13G206500 Gossypium hirsutum HOM05D003293 ORTHO05D005060 3.4e-16 89.0 65 67.7
SEGI_05687 Sequoiadendron giganteum HOM05D003293 ORTHO05D005060 3.4e-16 89.0 65 64.6
AUR62005030 Chenopodium quinoa HOM05D003293 ORTHO05D005060 4.5e-16 88.6 65 63.1
Nitab4.5_0003468g0040 Nicotiana tabacum HOM05D003293 ORTHO05D022256 4.5e-16 88.6 67 64.2
AagrBONN_evm.TU.Sc2ySwM_362.951 Anthoceros agrestis HOM05D003293 ORTHO05D005060 5.9e-16 88.2 67 61.2
arahy.Tifrunner.gnm1.ann1.Z9YTJW Arachis hypogaea HOM05D003293 ORTHO05D005060 5.9e-16 88.2 64 64.1
CAN.G641.45 Capsicum annuum HOM05D003293 ORTHO05D005060 5.9e-16 88.2 67 64.2
Cpa.g.c31787.1 Carica papaya HOM05D003293 ORTHO05D005060 5.9e-16 88.2 65 64.6
Gorai.013G251500 Gossypium raimondii HOM05D003293 ORTHO05D005060 5.9e-16 88.2 65 66.2
arahy.Tifrunner.gnm1.ann1.WB9EUJ Arachis hypogaea HOM05D003293 ORTHO05D005060 7.6e-16 87.8 64 64.1
Lj3C543G2 Lonicera japonica HOM05D003293 ORTHO05D005060 7.6e-16 87.8 65 63.1
Lalb_Chr20g0108441 Lupinus albus HOM05D003293 ORTHO05D005060 7.6e-16 87.8 65 64.6
Lalb_Chr25g0284391 Lupinus albus HOM05D003293 ORTHO05D005060 7.6e-16 87.8 65 64.6
Nitab4.5_0003468g0030 Nicotiana tabacum HOM05D003293 ORTHO05D005060 7.6e-16 87.8 67 61.2
Solyc10g079500.2 Solanum lycopersicum HOM05D003293 ORTHO05D005060 7.6e-16 87.8 66 63.6
PSO675G5548 Papaver somniferum HOM05D003293 ORTHO05D005060 1.0e-15 87.4 65 64.6
Gohir.D13G211100 Gossypium hirsutum HOM05D003293 ORTHO05D005060 1.7e-15 86.7 65 64.6
Gorai.013G241200 Gossypium raimondii HOM05D003293 ORTHO05D005060 1.7e-15 86.7 65 64.6
VMungo1383G2096 Vigna mungo HOM05D003293 ORTHO05D022256 1.7e-15 86.7 65 60.0
SMO361G0668 Selaginella moellendorffii HOM05D003293 ORTHO05D005060 2.9e-15 85.9 66 60.6
Aqoxy2G00246 Aquilegia oxysepala HOM05D003293 ORTHO05D005060 3.8e-15 85.5 65 63.1
PSO063G6375 Papaver somniferum HOM05D003293 ORTHO05D005060 5.0e-15 85.1 65 64.6
Eucgr.E02909 Eucalyptus grandis HOM05D003293 ORTHO05D005060 1.1e-14 84.0 65 63.1
PSO017G3619 Papaver somniferum HOM05D003293 ORTHO05D005060 1.4e-14 83.6 65 63.1
Zm00001eb057300 Zea mays HOM05D003293 ORTHO05D005060 1.4e-14 83.6 67 61.2
Eucgr.I02089 Eucalyptus grandis HOM05D003293 ORTHO05D005060 1.9e-14 83.2 65 63.1
Zm00001eb059650 Zea mays HOM05D003293 ORTHO05D005060 1.9e-14 83.2 67 59.7
HPP92_020647 Vanilla planifolia HOM05D003293 ORTHO05D022256 2.5e-14 82.8 65 58.5
PGR142G2665 Punica granatum HOM05D003293 ORTHO05D005060 4.2e-14 82.0 65 63.1
Os03g0780500 Oryza sativa ssp. japonica HOM05D003293 ORTHO05D005060 7.2e-14 81.3 67 58.2
Pp3c1_34070 Physcomitrium patens HOM05D003293 ORTHO05D005060 1.6e-13 80.1 64 59.4
Pp3c14_26610 Physcomitrium patens HOM05D003293 ORTHO05D005060 2.7e-13 79.3 64 59.4
ATR0665G286 Amborella trichopoda HOM05D003293 ORTHO05D005060 4.6e-13 78.6 65 55.4
MCO03G303 Micromonas commoda HOM05D003293 ORTHO05D005060 3.9e-12 75.5 66 56.1
Cre14.g614300 Chlamydomonas reinhardtii HOM05D003293 ORTHO05D005060 1.5e-11 73.6 64 54.7
CBR_g30467 Chara braunii HOM05D003293 ORTHO05D005060 4.3e-11 72.0 64 53.1
VMungo1080G1291 Vigna mungo HOM05D003293 ORTHO05D005060 2.8e-10 69.3 43 72.1
Mapoly0102s0045 Marchantia polymorpha HOM05D003293 ORTHO05D005060 3.7e-10 68.9 64 51.6
PRCOL_00001751 Prasinoderma coloniale HOM05D003293 ORTHO05D005060 8.2e-10 67.8 64 50.0
Haze_26254 Corylus avellana HOM05D003293 ORTHO05D005060 5.9e-08 61.6 64 45.3


User provided reference genes

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