Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa010349 Carpinus fangiana HOM05D007861 ORTHO05D007271 1.3e-41 172.6 82 100.0
Haze_23757 Corylus avellana HOM05D007861 ORTHO05D007271 2.4e-40 168.3 82 95.1
CiPaw.14G086500 Carya illinoinensis HOM05D007861 ORTHO05D007271 2.2e-25 118.6 83 73.5
CiPaw.13G118000 Carya illinoinensis HOM05D007861 ORTHO05D007271 1.1e-24 116.3 74 71.6
Prupe.6G107700 Prunus persica HOM05D007861 ORTHO05D007271 3.7e-20 101.3 84 66.7
TAR633G0087 Trochodendron aralioides HOM05D007861 ORTHO05D007271 1.1e-19 99.8 76 67.1
MSTRG.21100 Avicennia marina HOM05D007861 ORTHO05D007271 1.4e-19 99.4 82 62.2
Lj3g0027314 Lotus japonicus HOM05D007861 ORTHO05D007271 1.4e-19 99.4 83 66.3
Glyma.12G177000 Glycine max HOM05D007861 ORTHO05D007271 1.8e-19 99.0 83 63.9
FvH4_3g31180 Fragaria vesca HOM05D007861 ORTHO05D007271 2.4e-19 98.6 84 61.9
FAN11G3777 Fragaria x ananassa HOM05D007861 ORTHO05D007271 2.4e-19 98.6 84 61.9
FAN25G1997 Fragaria x ananassa HOM05D007861 ORTHO05D007271 2.4e-19 98.6 84 61.9
Glyma.11G195000 Glycine max HOM05D007861 ORTHO05D007271 2.4e-19 98.6 83 65.1
Glyma.13G323700 Glycine max HOM05D007861 ORTHO05D007271 4.0e-19 97.8 83 63.9
Lalb_Chr14g0374511 Lupinus albus HOM05D007861 ORTHO05D007271 4.0e-19 97.8 82 58.5
Medtr4g057830 Medicago truncatula HOM05D007861 ORTHO05D007271 6.9e-19 97.1 82 64.6
RcHm_v2.0_Chr5g0057831 Rosa chinensis HOM05D007861 ORTHO05D007271 6.9e-19 97.1 84 61.9
FAN21G2212 Fragaria x ananassa HOM05D007861 ORTHO05D007271 9.0e-19 96.7 84 61.9
Lalb_Chr24g0394821 Lupinus albus HOM05D007861 ORTHO05D007271 9.0e-19 96.7 82 58.5
Glyma.12G079100 Glycine max HOM05D007861 ORTHO05D007271 1.2e-18 96.3 83 63.9
Lj3g0021425 Lotus japonicus HOM05D007861 ORTHO05D007271 1.5e-18 95.9 83 60.2
FAN16G3504 Fragaria x ananassa HOM05D007861 ORTHO05D007271 2.0e-18 95.5 84 61.9
VMungo1127G1395 Vigna mungo HOM05D007861 ORTHO05D007271 3.4e-18 94.7 74 66.2
Phvul.011G083700 Phaseolus vulgaris HOM05D007861 ORTHO05D007271 5.8e-18 94.0 82 63.4
arahy.Tifrunner.gnm1.ann1.ALS1H8 Arachis hypogaea HOM05D007861 ORTHO05D007271 7.6e-18 93.6 73 63.0
TPR.G6167 Trifolium pratense HOM05D007861 ORTHO05D007271 7.6e-18 93.6 90 57.8
Lalb_Chr01g0004491 Lupinus albus HOM05D007861 ORTHO05D007271 2.9e-17 91.7 83 62.7
Sed0017526 Sechium edule HOM05D007861 ORTHO05D007271 4.9e-17 90.9 81 60.5
Phvul.005G132100 Phaseolus vulgaris HOM05D007861 ORTHO05D007271 6.5e-17 90.5 82 61.0
Lalb_Chr03g0027611 Lupinus albus HOM05D007861 ORTHO05D007271 1.1e-16 89.7 82 59.8
ClCG02G021400 Citrullus lanatus HOM05D007861 ORTHO05D007271 4.2e-16 87.8 69 63.8
Nn2g13767 Nelumbo nucifera HOM05D007861 ORTHO05D007271 7.1e-16 87.0 77 58.4
TPR.G11489 Trifolium pratense HOM05D007861 ORTHO05D007271 2.7e-15 85.1 82 58.5
Medtr2g095310 Medicago truncatula HOM05D007861 ORTHO05D007271 3.5e-15 84.7 83 59.0
MELO3C026916.2 Cucumis melo HOM05D007861 ORTHO05D007271 6.0e-15 84.0 72 62.5
Gohir.A05G106400 Gossypium hirsutum HOM05D007861 ORTHO05D007271 1.3e-14 82.8 79 57.0
CSS0012629 Camellia sinensis var. sinensis HOM05D007861 ORTHO05D007271 1.8e-14 82.4 80 55.0
Thecc.09G347700 Theobroma cacao HOM05D007861 ORTHO05D007271 1.8e-14 82.4 81 58.0
Nn2g11569 Nelumbo nucifera HOM05D007861 ORTHO05D007271 2.3e-14 82.0 83 53.0
Manes.11G150200 Manihot esculenta HOM05D007861 ORTHO05D007271 3.0e-14 81.6 82 54.9
CsaV3_6G014180 Cucumis sativus L. HOM05D007861 ORTHO05D007271 3.9e-14 81.3 84 58.3
DCAR_018786 Daucus carota HOM05D007861 ORTHO05D007271 3.9e-14 81.3 81 54.3
Migut.D02257 Erythranthe guttata HOM05D007861 ORTHO05D007271 5.1e-14 80.9 75 57.3
Gorai.004G230800 Gossypium raimondii HOM05D007861 ORTHO05D007271 5.1e-14 80.9 85 52.9
Gohir.D08G217100 Gossypium hirsutum HOM05D007861 ORTHO05D007271 6.7e-14 80.5 85 52.9
Gohir.D05G106401 Gossypium hirsutum HOM05D007861 ORTHO05D007271 8.7e-14 80.1 79 55.7
Gorai.009G110500 Gossypium raimondii HOM05D007861 ORTHO05D007271 8.7e-14 80.1 79 55.7
Potri.009G008300 Populus trichocarpa HOM05D007861 ORTHO05D007271 1.5e-13 79.3 65 64.6
Sed0005749 Sechium edule HOM05D007861 ORTHO05D007271 1.9e-13 79.0 75 60.0
Migut.N02575 Erythranthe guttata HOM05D007861 ORTHO05D007271 2.5e-13 78.6 80 55.0
Ciclev10029681m.g Citrus clementina HOM05D007861 ORTHO05D007271 5.7e-13 77.4 74 52.7
Hma1.2p1_0569F.1_g180260 Hydrangea macrophylla HOM05D007861 ORTHO05D007271 7.4e-13 77.0 63 55.6
Potri.008G036000 Populus trichocarpa HOM05D007861 ORTHO05D007271 7.4e-13 77.0 67 52.2
Sabra04G0145100 Salix brachista HOM05D007861 ORTHO05D007271 7.4e-13 77.0 66 60.6
Gohir.A08G200000 Gossypium hirsutum HOM05D007861 ORTHO05D007271 9.6e-13 76.6 85 51.8
Sabra09G0004800 Salix brachista HOM05D007861 ORTHO05D007271 3.7e-12 74.7 66 59.1
Manes.07G095300 Manihot esculenta HOM05D009695 ORTHO05D007271 8.2e-12 73.6 61 54.1
Sabra10G0174600 Salix brachista HOM05D007861 ORTHO05D007271 8.2e-12 73.6 66 48.5
Cpa.g.sc65.32 Carica papaya HOM05D007861 ORTHO05D007271 1.1e-11 73.2 79 55.7
Hma1.2p1_0344F.1_g131140 Hydrangea macrophylla HOM05D007861 ORTHO05D007271 1.1e-11 73.2 64 60.9
Manes.04G015900 Manihot esculenta HOM05D007861 ORTHO05D007271 1.1e-11 73.2 66 57.6
COL.COLO4_34705 Corchorus olitorius HOM05D007861 ORTHO05D007271 3.1e-11 71.6 83 54.2
Potri.004G213900 Populus trichocarpa HOM05D007861 ORTHO05D007271 3.1e-11 71.6 67 58.2
Atru.chr3.3557 Acer truncatum HOM05D007861 ORTHO05D007271 9.0e-11 70.1 82 51.2
Potri.010G226200 Populus trichocarpa HOM05D007861 ORTHO05D007271 1.2e-10 69.7 69 49.3
QL08p054789 Quercus lobata HOM05D009695 ORTHO05D007271 1.5e-10 69.3 81 49.4
PGSC0003DMG400019683 Solanum tuberosum HOM05D007861 ORTHO05D007271 2.0e-10 68.9 54 61.1
CiPaw.01G269700 Carya illinoinensis HOM05D007861 ORTHO05D007271 2.6e-10 68.6 69 53.6
Medtr1g094250 Medicago truncatula HOM05D007861 ORTHO05D007271 3.4e-10 68.2 60 56.7
Rhsim03G0116500 Rhododendron simsii HOM05D009695 ORTHO05D007271 3.4e-10 68.2 64 54.7
Cfa001682 Carpinus fangiana HOM05D009695 ORTHO05D007271 4.5e-10 67.8 71 47.9
Migut.F01962 Erythranthe guttata HOM05D007861 ORTHO05D007271 4.5e-10 67.8 74 47.3
Eucgr.J00896 Eucalyptus grandis HOM05D007861 ORTHO05D007271 1.0e-09 66.6 76 47.4
Gohir.D05G294900 Gossypium hirsutum HOM05D009695 ORTHO05D007271 1.0e-09 66.6 69 52.2
Gorai.009G311600 Gossypium raimondii HOM05D009695 ORTHO05D007271 1.0e-09 66.6 69 52.2
Solyc11g069730.1 Solanum lycopersicum HOM05D007861 ORTHO05D007271 1.0e-09 66.6 71 47.9
Aqoxy1G01166 Aquilegia oxysepala HOM05D007861 ORTHO05D007271 1.3e-09 66.2 59 52.5
Thecc.10G081700 Theobroma cacao HOM05D009695 ORTHO05D007271 2.9e-09 65.1 59 50.8
Gohir.A05G294400 Gossypium hirsutum HOM05D009695 ORTHO05D007271 3.8e-09 64.7 69 50.7
Ciclev10033954m.g Citrus clementina HOM05D007861 ORTHO05D007271 6.5e-09 63.9 60 51.7
Phvul.007G098200 Phaseolus vulgaris HOM05D007861 ORTHO05D007271 6.5e-09 63.9 60 51.7
TPR.G10289 Trifolium pratense HOM05D007861 ORTHO05D007271 6.5e-09 63.9 59 55.9
CiPaw.02G172600 Carya illinoinensis HOM05D019773 ORTHO05D007271 8.4e-09 63.5 62 50.0
Haze_16853 Corylus avellana HOM05D009695 ORTHO05D007271 8.4e-09 63.5 72 50.0
Manes.10G049800 Manihot esculenta HOM05D009695 ORTHO05D007271 8.4e-09 63.5 70 48.6
COL.COLO4_10198 Corchorus olitorius HOM05D009695 ORTHO05D007271 1.1e-08 63.2 68 47.1
Lsat_1_v5_gn_8_20640 Lactuca sativa HOM05D007861 ORTHO05D007271 1.4e-08 62.8 60 51.7
BraA04t17695Z Brassica rapa HOM05D014739 ORTHO05D007271 3.2e-08 61.6 68 48.5
Cc02_g11000 Coffea canephora HOM05D009695 ORTHO05D007271 4.2e-08 61.2 73 45.2
Psat6g181720 Pisum sativum HOM05D007861 ORTHO05D007271 7.1e-08 60.5 61 54.1
Sopen06g031390 Solanum pennellii HOM05D039995 ORTHO05D007271 7.1e-08 60.5 64 46.9
Glyma.20G182100 Glycine max HOM05D007861 ORTHO05D007271 1.2e-07 59.7 61 52.5
BcaB06g28183 Brassica carinata HOM05D014739 ORTHO05D007271 1.6e-07 59.3 68 47.1
BcaC02g08213 Brassica carinata HOM05D014739 ORTHO05D007271 1.6e-07 59.3 68 47.1
A04p21280 Brassica napus HOM05D014739 ORTHO05D007271 1.6e-07 59.3 68 47.1
BolC4t27246H Brassica oleracea HOM05D014739 ORTHO05D007271 1.6e-07 59.3 68 47.1
MBI18_g25264_MAGBIO Magnolia biondii HOM05D022601 ORTHO05D023448 1.6e-07 59.3 65 49.2
C04p57110 Brassica napus HOM05D014739 ORTHO05D007271 2.7e-07 58.5 68 47.1
Thhalv10017662m.g Eutrema salsugineum HOM05D014739 ORTHO05D007271 3.5e-07 58.2 73 49.3
Lalb_Chr02g0152111 Lupinus albus HOM05D007861 ORTHO05D007271 6.1e-07 57.4 59 50.8
Atru.chr12.833 Acer truncatum HOM05D009695 ORTHO05D007271 1.3e-06 56.2 56 46.4
Carub.0004s0882 Capsella rubella HOM05D014739 ORTHO05D007271 1.3e-06 56.2 72 45.8
Glyma.10G208600 Glycine max HOM05D007861 ORTHO05D007271 1.8e-06 55.8 64 50.0
Sp4g10850 Schrenkiella parvula HOM05D014739 ORTHO05D007271 2.3e-06 55.5 68 47.1
TAR623G0050 Trochodendron aralioides HOM05D007861 ORTHO05D007271 2.3e-06 55.5 55 49.1
DCAR_019088 Daucus carota HOM05D009695 ORTHO05D007271 3.0e-06 55.1 43 58.1
Cpa.g.sc53.122 Carica papaya HOM05D009695 ORTHO05D007271 5.1e-06 54.3 51 51.0
Nitab4.5_0000106g0370 Nicotiana tabacum HOM05D039995 ORTHO05D007271 5.1e-06 54.3 55 45.5
BcaB01g00155 Brassica carinata HOM05D009695 ORTHO05D007271 8.7e-06 53.5 62 43.5


User provided reference genes

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