Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa010344 Carpinus fangiana HOM05D004776 ORTHO05D005777 2.7e-308 1061.2 562 100.0
Haze_23751 Corylus avellana HOM05D004776 ORTHO05D005777 2.5e-237 825.5 537 84.5
CiPaw.13G118600 Carya illinoinensis HOM05D004776 ORTHO05D005777 1.2e-236 823.2 521 83.5
QL01p015865 Quercus lobata HOM05D004776 ORTHO05D005777 1.3e-225 786.6 519 81.1
Prupe.6G108100 Prunus persica HOM05D004776 ORTHO05D005777 2.4e-211 739.2 527 75.5
MD11G1145200 Malus domestica HOM05D004776 ORTHO05D005777 7.6e-210 734.2 526 75.7
Thecc.09G348100 Theobroma cacao HOM05D004776 ORTHO05D005777 2.7e-207 725.7 515 74.2
RcHm_v2.0_Chr2g0122071 Rosa chinensis HOM05D004776 ORTHO05D005777 5.1e-206 721.5 520 75.2
Manes.04G015500 Manihot esculenta HOM05D004776 ORTHO05D005777 2.8e-204 715.7 515 74.4
Gorai.003G144600 Gossypium raimondii HOM05D004776 ORTHO05D005777 1.1e-203 713.8 541 70.6
Dinv29356 Davidia involucrata HOM05D004776 ORTHO05D006187 2.4e-203 712.6 503 74.6
Gorai.013G268700 Gossypium raimondii HOM05D004776 ORTHO05D005777 5.3e-203 711.4 522 73.0
Gohir.D03G137500 Gossypium hirsutum HOM05D004776 ORTHO05D005777 9.0e-203 710.7 541 70.4
FAN28G2552 Fragaria x ananassa HOM05D004776 ORTHO05D005777 2.0e-202 709.5 528 73.5
FAN26G3463 Fragaria x ananassa HOM05D004776 ORTHO05D005777 3.4e-202 708.8 528 73.5
FvH4_1g24650 Fragaria vesca HOM05D004776 ORTHO05D005777 4.5e-202 708.4 520 73.8
Hma1.2p1_0569F.1_g180290 Hydrangea macrophylla HOM05D004776 ORTHO05D005777 4.5e-202 708.4 521 71.8
FAN23G0844 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.7e-201 706.4 529 73.5
Ciclev10028099m.g Citrus clementina HOM05D004776 ORTHO05D005777 4.2e-200 701.8 522 71.3
GSVIVG01031509001 Vitis vinifera HOM05D004776 ORTHO05D005777 4.2e-200 701.8 521 72.2
CANSAT54G2950 Cannabis sativa HOM05D004776 ORTHO05D005777 9.3e-200 700.7 522 72.2
FAN19G0403 Fragaria x ananassa HOM05D004776 ORTHO05D005777 4.6e-199 698.4 527 72.3
TWI31G0757 Tripterygium wilfordii HOM05D004776 ORTHO05D005777 1.0e-198 697.2 522 71.8
CSS0005795 Camellia sinensis var. sinensis HOM05D004776 ORTHO05D005777 2.3e-198 696.0 527 71.3
CSS0042525 Camellia sinensis var. sinensis HOM05D004776 ORTHO05D005777 1.1e-197 693.7 527 71.2
TWI79G1687 Tripterygium wilfordii HOM05D004776 ORTHO05D005777 2.4e-195 686.0 524 70.6
TAR623G0387 Trochodendron aralioides HOM05D004776 ORTHO05D005777 6.9e-195 684.5 527 70.2
Glyma.13G323400 Glycine max HOM05D004776 ORTHO05D005777 1.0e-193 680.6 519 69.4
Medtr2g095420 Medicago truncatula HOM05D004776 ORTHO05D005777 2.9e-193 679.1 519 68.4
Lj3g0025221 Lotus japonicus HOM05D004776 ORTHO05D005777 3.8e-193 678.7 519 69.2
vmacro14409 Vaccinium macrocarpon HOM05D004776 ORTHO05D005777 3.8e-193 678.7 527 68.9
Nn2g11574 Nelumbo nucifera HOM05D004776 ORTHO05D005777 6.5e-193 677.9 530 68.3
Potri.009G007900 Populus trichocarpa HOM05D004776 ORTHO05D005777 2.5e-192 676.0 529 70.3
Phvul.005G131900 Phaseolus vulgaris HOM05D004776 ORTHO05D005777 1.2e-191 673.7 519 69.0
TPR.G11629 Trifolium pratense HOM05D004776 ORTHO05D005777 3.6e-191 672.2 519 68.8
Actinidia20436 Actinidia chinensis HOM05D004776 ORTHO05D005777 1.0e-190 670.6 522 69.3
Rhsim01G0212300 Rhododendron simsii HOM05D004776 ORTHO05D005777 2.3e-190 669.5 529 69.0
THA.LOC104799516 Tarenaya hassleriana HOM05D004776 ORTHO05D005777 6.7e-190 667.9 526 67.5
Lalb_Chr03g0027621 Lupinus albus HOM05D004776 ORTHO05D005777 3.3e-189 665.6 521 69.1
Gohir.D13G237900 Gossypium hirsutum HOM05D004776 ORTHO05D005777 9.7e-189 664.1 522 69.3
Psat0s3241g0040 Pisum sativum HOM05D004776 ORTHO05D005777 3.1e-187 659.1 519 68.2
arahy.Tifrunner.gnm1.ann1.K18VCE Arachis hypogaea HOM05D004776 ORTHO05D005777 6.9e-187 657.9 528 67.4
CsaV3_1G013400 Cucumis sativus L. HOM05D004776 ORTHO05D005777 6.9e-187 657.9 516 69.2
AT3G45040 Arabidopsis thaliana HOM05D004776 ORTHO05D005777 2.0e-186 656.4 521 65.3
arahy.Tifrunner.gnm1.ann1.UZ8W9W Arachis hypogaea HOM05D004776 ORTHO05D005777 2.0e-186 656.4 528 67.2
AL5G23530 Arabidopsis lyrata HOM05D004776 ORTHO05D005777 3.4e-186 655.6 521 65.8
VMungo1080G0818 Vigna mungo HOM05D004776 ORTHO05D006187 4.5e-186 655.2 519 68.6
Sabra09G0004700 Salix brachista HOM05D004776 ORTHO05D005777 1.7e-185 653.3 532 67.9
Sed0027733 Sechium edule HOM05D004776 ORTHO05D005777 2.2e-185 652.9 513 69.0
PGSC0003DMG400007163 Solanum tuberosum HOM05D004776 ORTHO05D005777 2.2e-185 652.9 523 67.3
Sp5g16230 Schrenkiella parvula HOM05D004776 ORTHO05D005777 3.8e-185 652.1 524 66.0
C04p17380 Brassica napus HOM05D004776 ORTHO05D005777 6.5e-185 651.4 525 65.0
BolC4t23289H Brassica oleracea HOM05D004776 ORTHO05D005777 6.5e-185 651.4 525 65.0
arahy.Tifrunner.gnm1.ann1.69IQEU Arachis hypogaea HOM05D004776 ORTHO05D005777 8.5e-185 651.0 517 67.7
Solyc06g074960.4 Solanum lycopersicum HOM05D004776 ORTHO05D005777 1.1e-184 650.6 523 66.9
BcaC02g11340 Brassica carinata HOM05D004776 ORTHO05D005777 1.9e-184 649.8 525 64.8
BcaC09g49697 Brassica carinata HOM05D004776 ORTHO05D005777 1.9e-184 649.8 523 65.6
Aqoxy2G01783 Aquilegia oxysepala HOM05D004776 ORTHO05D005777 2.5e-184 649.4 525 66.7
CAN.G1755.5 Capsicum annuum HOM05D004776 ORTHO05D005777 4.2e-184 648.7 521 66.4
COL.COLO4_34701 Corchorus olitorius HOM05D004776 ORTHO05D005777 7.2e-184 647.9 453 73.5
PGR102G1642 Punica granatum HOM05D004776 ORTHO05D005777 7.2e-184 647.9 517 65.8
A05p13030 Brassica napus HOM05D004776 ORTHO05D005777 2.1e-183 646.4 524 65.1
BraA05t20243Z Brassica rapa HOM05D004776 ORTHO05D005777 4.7e-183 645.2 524 64.9
BolC1t03347H Brassica oleracea HOM05D004776 ORTHO05D005777 3.0e-182 642.5 514 65.6
ClCG03G002670 Citrullus lanatus HOM05D004776 ORTHO05D005777 2.0e-181 639.8 526 67.7
Carub.0005s1082 Capsella rubella HOM05D004776 ORTHO05D005777 2.6e-181 639.4 521 63.7
Thhalv10002461m.g Eutrema salsugineum HOM05D004776 ORTHO05D005777 2.6e-181 639.4 512 65.4
CARHR150930 Cardamine hirsuta HOM05D004776 ORTHO05D005777 4.4e-181 638.6 516 64.7
Ca_01388_v3 Cicer arietinum L. HOM05D004776 ORTHO05D006187 5.7e-181 638.3 473 70.8
HanXRQChr11g0346181 Helianthus annuus HOM05D004776 ORTHO05D005777 2.8e-180 636.0 523 66.5
Lj1A206T59 Lonicera japonica HOM05D004776 ORTHO05D005777 2.8e-180 636.0 499 67.7
BcaB05g23422 Brassica carinata HOM05D004776 ORTHO05D005777 8.2e-180 634.4 528 64.0
C01p33820 Brassica napus HOM05D004776 ORTHO05D005777 1.4e-179 633.6 548 62.2
PSO339G3038 Papaver somniferum HOM05D004776 ORTHO05D005777 2.4e-179 632.9 531 65.0
Duzib168G1494 Durio zibethinus HOM05D004776 ORTHO05D005777 1.2e-178 630.6 520 67.5
PSO801G0074 Papaver somniferum HOM05D004776 ORTHO05D005777 1.5e-178 630.2 530 65.1
Oeu018486.2 Olea europaea HOM05D004776 ORTHO05D005777 1.3e-177 627.1 517 65.2
ECA248G3913 Erigeron canadensis HOM05D004776 ORTHO05D005777 1.1e-176 624.0 528 64.2
Glyma.12G177300 Glycine max HOM05D004776 ORTHO05D005777 4.0e-174 615.5 484 67.8
A01p26580 Brassica napus HOM05D004776 ORTHO05D005777 2.0e-173 613.2 514 63.8
PSO339G3219 Papaver somniferum HOM05D004776 ORTHO05D005777 7.4e-173 611.3 541 63.4
Duzib170G0082 Durio zibethinus HOM05D004776 ORTHO05D005777 9.7e-173 610.9 552 63.8
Cc01_g10560 Coffea canephora HOM05D004776 ORTHO05D005777 2.2e-172 609.8 520 62.9
BraA01t02588Z Brassica rapa HOM05D004776 ORTHO05D005777 4.8e-172 608.6 515 63.7
AUR62014926 Chenopodium quinoa HOM05D004776 ORTHO05D005777 1.6e-170 603.6 520 63.5
SGA_v2.0_scaffold116G32209 Striga asiatica HOM05D004776 ORTHO05D005777 2.0e-170 603.2 519 63.0
Peaxi162Scf01159g00227 Petunia axillaris HOM05D004776 ORTHO05D005777 6.5e-169 598.2 569 59.8
MSTRG.17776 Avicennia marina HOM05D004776 ORTHO05D005777 1.1e-168 597.4 531 63.7
AUR62029209 Chenopodium quinoa HOM05D004776 ORTHO05D005777 2.7e-167 592.8 520 61.9
SalBow3G4083 Salvia bowleyana HOM05D004776 ORTHO05D005777 1.8e-166 590.1 532 61.8
MELO3C035466.2 Cucumis melo HOM05D004776 ORTHO05D005777 4.4e-165 585.5 577 60.0
arahy.Tifrunner.gnm1.ann1.MGN1WG Arachis hypogaea HOM05D004776 ORTHO05D005777 2.2e-164 583.2 535 61.1
Nitab4.5_0000106g0400 Nicotiana tabacum HOM05D004776 ORTHO05D005777 1.3e-161 573.9 542 60.3
Sc05g0005060 Simmondsia chinensis HOM05D004776 ORTHO05D005777 2.0e-157 560.1 471 63.9
Eucgr.B02538 Eucalyptus grandis HOM05D004776 ORTHO05D005777 2.2e-156 556.6 415 68.9
ATR1132G031 Amborella trichopoda HOM05D004776 ORTHO05D005777 3.1e-155 552.7 532 59.4
Lsat_1_v5_gn_1_63021 Lactuca sativa HOM05D004776 ORTHO05D005777 8.6e-153 544.7 516 59.3
DCAR_006106 Daucus carota HOM05D004776 ORTHO05D005777 3.4e-149 532.7 520 58.5
PSO063G2354 Papaver somniferum HOM05D004776 ORTHO05D005777 4.6e-146 522.3 457 62.4
Manes.11G150502 Manihot esculenta HOM05D004776 ORTHO05D005777 1.3e-145 520.8 505 60.2
Migut.N02573 Erythranthe guttata HOM05D004776 ORTHO05D005777 7.3e-144 515.0 484 59.3
HPP92_025805 Vanilla planifolia HOM05D004776 ORTHO05D005777 4.7e-143 512.3 535 53.3
SEGI_33157 Sequoiadendron giganteum HOM05D004776 ORTHO05D005777 6.0e-138 495.4 528 53.2
EL10Ac9g22573 Beta vulgaris HOM05D004776 ORTHO05D005777 3.3e-136 489.6 520 56.5
SEGI_23621 Sequoiadendron giganteum HOM05D004776 ORTHO05D005777 2.1e-130 470.3 468 55.8
Nitab4.5_0006015g0020 Nicotiana tabacum HOM05D004776 ORTHO05D005777 6.0e-130 468.8 558 52.2
Gohir.A03G030900 Gossypium hirsutum HOM05D004776 ORTHO05D005777 5.6e-128 462.2 323 74.0
Sopen06g031360 Solanum pennellii HOM05D004776 ORTHO05D005777 5.8e-125 452.2 303 74.6
Zm00001eb232190 Zea mays HOM05D004776 ORTHO05D005777 3.2e-123 446.4 492 52.8
unitig_8.g3670 Utricularia gibba HOM05D004776 ORTHO05D005777 4.1e-123 446.0 516 51.9
Cpa.g.sc1.24 Carica papaya HOM05D004776 ORTHO05D005777 2.4e-118 430.3 423 59.8
MBI18_g10191_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 2.9e-116 423.3 294 72.4
BcaNung05691 Brassica carinata HOM05D004776 ORTHO05D005777 1.1e-112 411.4 395 58.0
Oeu029897.2 Olea europaea HOM05D004776 ORTHO05D005777 9.6e-112 408.3 357 62.7
MD00G1033900 Malus domestica HOM05D004776 ORTHO05D005777 4.2e-107 392.9 401 58.1
Atru.chr3.3553 Acer truncatum HOM05D004776 ORTHO05D005777 3.9e-105 386.3 304 64.8
Hund01475 Selenicereus undatus HOM05D004776 ORTHO05D005777 4.8e-103 379.4 412 56.3
AL5G23500 Arabidopsis lyrata HOM05D004776 ORTHO05D005777 3.1e-102 376.7 317 63.7
Actinidia14011 Actinidia chinensis HOM05D004776 ORTHO05D005777 1.3e-92 344.7 197 89.8
MBI18_g20776_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 2.2e-92 344.0 371 55.0
PGR094G0002 Punica granatum HOM05D004776 ORTHO05D005777 1.9e-91 340.9 195 86.2
PGR094G0004 Punica granatum HOM05D004776 ORTHO05D005777 1.9e-91 340.9 195 86.2
Actinidia03705 Actinidia chinensis HOM05D004776 ORTHO05D005777 3.3e-88 330.1 328 55.2
BcaNung05690 Brassica carinata HOM05D004776 ORTHO05D005777 4.1e-86 323.2 378 52.1
Aqoxy3G00574 Aquilegia oxysepala HOM05D004776 ORTHO05D005777 8.4e-84 315.5 198 79.8
MBI18_g43296_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 4.8e-79 299.7 237 64.6
Actinidia03704 Actinidia chinensis HOM05D004776 ORTHO05D005777 5.7e-72 276.2 146 93.2
Mapoly0124s0030 Marchantia polymorpha HOM05D004776 ORTHO05D005777 3.8e-68 263.5 531 35.2
Pp3c13_8200 Physcomitrium patens HOM05D004776 ORTHO05D005777 3.8e-68 263.5 525 34.7
Ca_01994_v3 Cicer arietinum L. HOM05D004776 ORTHO05D005777 5.7e-56 223.0 243 53.9
Atru.chr3.3552 Acer truncatum HOM05D004776 ORTHO05D005777 1.1e-54 218.8 113 89.4
MD03G1126100 Malus domestica HOM05D004776 ORTHO05D005777 1.1e-51 208.8 416 38.0
CBR_g19018 Chara braunii HOM05D000019 ORTHO05D000002 6.3e-47 193.0 556 30.6
AagrBONN_evm.TU.Sc2ySwM_228.5408 Anthoceros agrestis HOM05D004776 ORTHO05D005777 3.8e-44 183.7 498 30.9
Aa31LG4G14110 Aethionema arabicum HOM05D004776 ORTHO05D005777 3.2e-43 180.6 97 89.7
Gohir.1Z049525 Gossypium hirsutum HOM05D004776 ORTHO05D005777 1.7e-39 168.3 97 87.6
Gohir.A13G232250 Gossypium hirsutum HOM05D004776 ORTHO05D005777 4.1e-38 163.7 97 84.5
Gohir.A03G030950 Gossypium hirsutum HOM05D004776 ORTHO05D005777 1.0e-36 159.1 166 57.8
CDE06G1539 Ceratophyllum demersum HOM05D004776 ORTHO05D005777 1.7e-36 158.3 134 63.4
Cpa.g.sc1.25 Carica papaya HOM05D004776 ORTHO05D005777 3.8e-36 157.1 88 86.4
FAN27G1933 Fragaria x ananassa HOM05D004776 ORTHO05D005777 8.6e-36 156.0 82 92.7
FAN23G0725 Fragaria x ananassa HOM05D004776 ORTHO05D005777 3.9e-28 130.6 121 61.2
Os02g0146500 Oryza sativa ssp. japonica HOM05D004776 ORTHO05D005777 4.3e-27 127.1 201 44.8
Os02g0142250 Oryza sativa ssp. japonica HOM05D004776 ORTHO05D005777 1.6e-26 125.2 178 45.5
MD00G1165500 Malus domestica HOM05D004776 ORTHO05D005777 2.5e-19 101.3 92 67.4
MCO11G119 Micromonas commoda HOM05D004776 ORTHO05D005777 9.5e-19 99.4 501 25.7
Cfa026928 Carpinus fangiana HOM05D004776 ORTHO05D005777 2.8e-18 97.8 188 32.4
Atru.chr3.3551 Acer truncatum HOM05D004776 ORTHO05D005777 1.1e-14 85.9 45 86.7
Cre06.g277700 Chlamydomonas reinhardtii HOM05D004776 ORTHO05D005777 4.1e-14 84.0 208 29.8
FAN07G0780 Fragaria x ananassa HOM05D004776 ORTHO05D005777 4.1e-14 84.0 54 79.6
FAN10G3619 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.2e-13 82.4 44 93.2
FAN05G3839 Fragaria x ananassa HOM05D004776 ORTHO05D005777 7.8e-13 79.7 43 93.0
MD00G1033800 Malus domestica HOM05D004776 ORTHO05D005777 7.3e-11 73.2 43 76.7


User provided reference genes

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