Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa010314 Carpinus fangiana HOM05D005062 ORTHO05D006410 2.3e-227 792.0 421 100.0
CiPaw.13G040200 Carya illinoinensis HOM05D005062 ORTHO05D006410 2.3e-187 659.1 421 83.6
QL04p046667 Quercus lobata HOM05D005062 ORTHO05D006410 2.5e-181 639.0 446 78.5
MD02G1255900 Malus domestica HOM05D005062 ORTHO05D006410 4.1e-168 595.1 413 76.5
RcHm_v2.0_Chr1g0332571 Rosa chinensis HOM05D005062 ORTHO05D006410 5.8e-162 574.7 421 73.4
Atru.chr12.1008 Acer truncatum HOM05D005062 ORTHO05D006410 1.0e-158 563.9 411 74.2
Cpa.g.sc183.10 Carica papaya HOM05D005062 ORTHO05D006410 1.5e-157 560.1 418 72.7
Duzib106G1045 Durio zibethinus HOM05D005062 ORTHO05D006410 2.1e-156 556.2 412 74.5
FvH4_7g05590 Fragaria vesca HOM05D005062 ORTHO05D006410 4.7e-156 555.1 412 72.8
FAN01G3081 Fragaria x ananassa HOM05D005062 ORTHO05D006410 4.7e-156 555.1 412 72.8
FAN10G1073 Fragaria x ananassa HOM05D005062 ORTHO05D006410 5.2e-155 551.6 412 72.6
PGR044G2170 Punica granatum HOM05D005062 ORTHO05D006410 7.6e-154 547.7 412 71.6
Eucgr.J00992 Eucalyptus grandis HOM05D005062 ORTHO05D006410 6.4e-153 544.7 411 72.3
Manes.10G058650 Manihot esculenta HOM05D005062 ORTHO05D006410 8.4e-153 544.3 420 70.2
TAR623G1543 Trochodendron aralioides HOM05D005062 ORTHO05D006410 1.2e-151 540.4 420 71.0
GSVIVG01011284001 Vitis vinifera HOM05D005062 ORTHO05D006410 3.5e-151 538.9 452 68.6
Oeu026579.1 Olea europaea HOM05D005062 ORTHO05D006410 1.5e-149 533.5 426 70.9
Dinv11848 Davidia involucrata HOM05D005062 ORTHO05D006410 9.6e-149 530.8 342 82.2
FAN06G1220 Fragaria x ananassa HOM05D005062 ORTHO05D006410 9.6e-149 530.8 392 73.5
FAN23G1954 Fragaria x ananassa HOM05D005062 ORTHO05D006410 2.1e-148 529.6 368 76.9
CSS0050380 Camellia sinensis var. sinensis HOM05D005062 ORTHO05D006410 4.8e-148 528.5 419 70.9
Potri.008G021600 Populus trichocarpa HOM05D005062 ORTHO05D006410 8.1e-148 527.7 421 69.1
Gorai.008G099000 Gossypium raimondii HOM05D005062 ORTHO05D006410 5.3e-147 525.0 420 69.8
Nn2g14130 Nelumbo nucifera HOM05D005062 ORTHO05D006410 5.3e-147 525.0 418 68.2
CSS0021342 Camellia sinensis var. sinensis HOM05D005062 ORTHO05D006410 4.5e-146 521.9 419 70.2
Gohir.A12G092722 Gossypium hirsutum HOM05D005062 ORTHO05D006410 7.6e-146 521.2 420 69.3
Sabra08G0014600 Salix brachista HOM05D005062 ORTHO05D006410 9.9e-146 520.8 420 68.6
CsaV3_2G034960 Cucumis sativus L. HOM05D005062 ORTHO05D006410 1.1e-144 517.3 410 68.3
Aqoxy2G01214 Aquilegia oxysepala HOM05D005062 ORTHO05D006410 2.1e-143 513.1 425 67.1
FAN23G1474 Fragaria x ananassa HOM05D005062 ORTHO05D006410 1.8e-142 510.0 336 80.4
FAN23G2695 Fragaria x ananassa HOM05D005062 ORTHO05D006410 3.0e-142 509.2 450 65.1
CAN.G54.5 Capsicum annuum HOM05D005062 ORTHO05D006410 4.8e-140 501.9 412 67.5
THA.LOC104824209 Tarenaya hassleriana HOM05D005062 ORTHO05D006410 1.4e-139 500.4 410 66.6
Migut.F01613 Erythranthe guttata HOM05D005062 ORTHO05D006410 1.8e-139 500.0 365 74.5
Lalb_Chr19g0129181 Lupinus albus HOM05D005062 ORTHO05D006410 1.8e-139 500.0 422 65.2
Medtr1g050462 Medicago truncatula HOM05D005062 ORTHO05D006410 2.4e-139 499.6 419 65.6
Solyc07g014740.3 Solanum lycopersicum HOM05D005062 ORTHO05D006410 1.5e-138 496.9 416 65.6
DCAR_006341 Daucus carota HOM05D005062 ORTHO05D006410 1.3e-137 493.8 421 64.4
Nitab4.5_0010225g0010 Nicotiana tabacum HOM05D005062 ORTHO05D006410 1.3e-137 493.8 418 65.3
Glyma.10G111800 Glycine max HOM05D005062 ORTHO05D006410 1.7e-137 493.4 421 64.6
Ca_12731_v3 Cicer arietinum L. HOM05D005062 ORTHO05D006410 2.9e-137 492.7 413 64.9
HanXRQChr08g0217771 Helianthus annuus HOM05D005062 ORTHO05D006410 2.9e-137 492.7 433 65.1
ECA233G2289 Erigeron canadensis HOM05D005062 ORTHO05D006410 6.4e-137 491.5 420 66.2
Actinidia18593 Actinidia chinensis HOM05D000444 ORTHO05D000489 1.9e-136 490.0 426 64.8
FAN03G1004 Fragaria x ananassa HOM05D005062 ORTHO05D006410 7.1e-136 488.0 461 62.7
Phvul.007G247700 Phaseolus vulgaris HOM05D005062 ORTHO05D006410 1.2e-135 487.3 355 73.0
Lj5g0026270 Lotus japonicus HOM05D005062 ORTHO05D006410 3.0e-134 482.6 412 62.6
arahy.Tifrunner.gnm1.ann1.BZ57JC Arachis hypogaea HOM05D005062 ORTHO05D006410 8.7e-134 481.1 424 63.7
arahy.Tifrunner.gnm1.ann1.ZAGE2X Arachis hypogaea HOM05D005062 ORTHO05D006410 1.9e-133 479.9 423 63.6
Rhsim03G0099700 Rhododendron simsii HOM05D005062 ORTHO05D006410 5.6e-133 478.4 504 57.1
SalBow6G6867 Salvia bowleyana HOM05D005062 ORTHO05D006410 5.6e-133 478.4 426 64.1
MSTRG.8110 Avicennia marina HOM05D005062 ORTHO05D006410 9.0e-131 471.1 417 63.8
AUR62034504 Chenopodium quinoa HOM05D005062 ORTHO05D006410 2.0e-130 469.9 436 60.6
AT3G56160 Arabidopsis thaliana HOM05D005062 ORTHO05D006410 2.6e-130 469.5 389 65.3
AL5G37480 Arabidopsis lyrata HOM05D005062 ORTHO05D006410 7.6e-130 468.0 389 64.8
CDE06G2329 Ceratophyllum demersum HOM05D005062 ORTHO05D006410 6.5e-129 464.9 374 66.3
HanXRQChr11g0342201 Helianthus annuus HOM05D005062 ORTHO05D006410 8.4e-129 464.5 424 62.5
Sp5g06340 Schrenkiella parvula HOM05D005062 ORTHO05D006410 3.2e-128 462.6 403 64.3
GSVIVG01036146001 Vitis vinifera HOM05D005062 ORTHO05D006410 4.2e-128 462.2 397 64.5
Cc02_g09770 Coffea canephora HOM05D005062 ORTHO05D006410 7.1e-128 461.5 341 72.4
Lsat_1_v5_gn_8_23960 Lactuca sativa HOM05D005062 ORTHO05D006410 7.1e-128 461.5 331 72.8
Peaxi162Scf00235g10011 Petunia axillaris HOM05D005062 ORTHO05D006410 3.5e-127 459.1 423 61.7
A09p49130 Brassica napus HOM05D002435 ORTHO05D002550 7.9e-127 458.0 366 67.5
BraA09t40366Z Brassica rapa HOM05D005062 ORTHO05D006410 7.9e-127 458.0 366 67.5
BcaC07g39930 Brassica carinata HOM05D002435 ORTHO05D002550 6.7e-126 454.9 365 66.6
BolC8t50765H Brassica oleracea HOM05D002435 ORTHO05D002550 6.7e-126 454.9 365 66.6
Lsat_1_v5_gn_2_104621 Lactuca sativa HOM05D005062 ORTHO05D006410 6.7e-126 454.9 432 60.4
BcaB01g00026 Brassica carinata HOM05D002435 ORTHO05D002550 2.2e-124 449.9 366 66.9
ECA238G3155 Erigeron canadensis HOM05D005062 ORTHO05D006410 3.7e-124 449.1 387 63.3
CiPaw.14G101300 Carya illinoinensis HOM05D005062 ORTHO05D006410 4.8e-124 448.7 394 61.4
C08p31440 Brassica napus HOM05D002435 ORTHO05D002550 1.4e-123 447.2 366 66.4
ATR0081G026 Amborella trichopoda HOM05D005062 ORTHO05D006410 1.0e-121 441.0 402 60.9
Thhalv10006005m.g Eutrema salsugineum HOM05D005062 ORTHO05D006410 3.0e-118 429.5 348 67.8
Thecc.10G106400 Theobroma cacao HOM05D005062 ORTHO05D006410 3.9e-118 429.1 322 71.4
HanXRQChr08g0217571 Helianthus annuus HOM05D005062 ORTHO05D006410 5.7e-117 425.2 372 61.0
Sed0016949 Sechium edule HOM05D005062 ORTHO05D006410 9.1e-115 417.9 359 64.6
Os02g0531200 Oryza sativa ssp. japonica HOM05D005062 ORTHO05D006410 5.9e-114 415.2 350 62.0
TPR.G10638 Trifolium pratense HOM05D005062 ORTHO05D006410 6.5e-113 411.8 285 76.1
Sopen07g005620 Solanum pennellii HOM05D000002 ORTHO05D000001 8.5e-113 411.4 367 63.5
HPP92_007815 Vanilla planifolia HOM05D005062 ORTHO05D006410 1.6e-111 407.1 424 54.5
Eucgr.B03869 Eucalyptus grandis HOM05D005062 ORTHO05D006410 2.1e-111 406.8 358 59.5
PGR102G2753 Punica granatum HOM05D005062 ORTHO05D006410 1.0e-110 404.4 390 58.5
EL10As25g24233 Beta vulgaris HOM05D005062 ORTHO05D006410 3.9e-110 402.5 473 51.4
Sc12g0004460 Simmondsia chinensis HOM05D005062 ORTHO05D006410 5.7e-109 398.7 390 59.0
Gohir.D12G091480 Gossypium hirsutum HOM05D005062 ORTHO05D006410 2.6e-106 389.8 325 67.1
Ciclev10032297m.g Citrus clementina HOM05D005062 ORTHO05D006410 2.1e-103 380.2 291 70.1
Ah.08g215800 Amaranthus hybridus HOM05D005062 ORTHO05D006410 4.7e-103 379.0 373 55.8
Ah.09g232820 Amaranthus hybridus HOM05D005062 ORTHO05D006410 3.9e-102 375.9 390 55.4
CiPaw.14G101100 Carya illinoinensis HOM05D005062 ORTHO05D006410 4.8e-100 369.0 405 54.8
VMungo0720G3089 Vigna mungo HOM05D000444 ORTHO05D000489 1.1e-96 357.8 523 46.5
Prupe.2G079400 Prunus persica HOM05D005062 ORTHO05D006410 2.0e-93 347.1 267 69.7
Hund06778 Selenicereus undatus HOM05D005062 ORTHO05D006410 2.6e-93 346.7 409 52.1
Haze_02485 Corylus avellana HOM05D005062 ORTHO05D006410 1.5e-88 330.9 183 92.3
MD02G1256100 Malus domestica HOM05D005062 ORTHO05D006410 2.1e-87 327.0 257 68.5
Haze_02484 Corylus avellana HOM05D005062 ORTHO05D006410 7.7e-82 308.5 243 75.7
SGA_v2.0_scaffold13G06459 Striga asiatica HOM05D005062 ORTHO05D006410 7.7e-82 308.5 472 46.2
unitig_578.g16343 Utricularia gibba HOM05D005062 ORTHO05D006410 7.7e-82 308.5 342 53.8
AUR62009772 Chenopodium quinoa HOM05D005062 ORTHO05D006410 2.8e-79 300.1 422 45.5
CARHR166310 Cardamine hirsuta HOM05D005062 ORTHO05D006410 1.4e-78 297.7 215 74.4
Sc20g0001180 Simmondsia chinensis HOM05D003607 ORTHO05D004049 1.2e-77 294.7 218 71.1
Zm00001eb242730 Zea mays HOM05D005062 ORTHO05D006410 1.3e-76 291.2 219 66.7
Lj3A928T57 Lonicera japonica HOM05D005062 ORTHO05D006410 5.0e-73 279.3 242 67.4
Zm00001eb296300 Zea mays HOM05D005062 ORTHO05D006410 1.8e-70 270.8 243 59.3
Carub.0005s2291 Capsella rubella HOM05D005062 ORTHO05D006410 3.4e-69 266.5 216 65.7
EL10Ac7g15813 Beta vulgaris HOM05D005062 ORTHO05D006410 2.7e-66 256.9 413 41.2
AagrBONN_evm.TU.Sc2ySwM_117.1142 Anthoceros agrestis HOM05D005062 ORTHO05D006410 1.2e-61 241.5 252 52.4
Mapoly0046s0115 Marchantia polymorpha HOM05D005062 ORTHO05D006410 7.5e-61 238.8 329 41.9
SMO347G0520 Selaginella moellendorffii HOM05D005062 ORTHO05D006410 1.3e-57 228.0 344 42.7
AUR62039218 Chenopodium quinoa HOM05D005062 ORTHO05D006410 2.5e-56 223.8 351 40.5
Duzib128G0173 Durio zibethinus HOM05D005062 ORTHO05D006410 5.6e-56 222.6 232 59.1
Haze_23392 Corylus avellana HOM05D005062 ORTHO05D006410 2.8e-55 220.3 233 55.8
A02p12720 Brassica napus HOM05D005062 ORTHO05D006410 2.4e-51 207.2 224 57.6
Pp3c3_30210 Physcomitrium patens HOM05D005062 ORTHO05D006410 3.5e-50 203.4 264 43.6
Psat6g129720 Pisum sativum HOM05D005062 ORTHO05D006410 1.1e-48 198.4 145 71.7
MD02G1256200 Malus domestica HOM05D005062 ORTHO05D006410 2.2e-44 184.1 121 76.9
PRCOL_00003606 Prasinoderma coloniale HOM05D005062 ORTHO05D006410 3.9e-41 173.3 337 36.5
QL01p012456 Quercus lobata HOM05D005062 ORTHO05D006410 1.2e-39 168.3 128 69.5
CBR_g48207 Chara braunii HOM05D000019 ORTHO05D000048 2.1e-39 167.5 262 37.8
Cre09.g395700 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 3.6e-39 166.8 358 34.1
Lj3C928T13 Lonicera japonica HOM05D005062 ORTHO05D006410 5.4e-35 152.9 167 55.7
MCO15G192 Micromonas commoda HOM05D005062 ORTHO05D006410 1.6e-34 151.4 297 30.3
QL01p012462 Quercus lobata HOM05D005062 ORTHO05D006410 2.1e-34 151.0 131 56.5
ClCG02G008710 Citrullus lanatus HOM05D005062 ORTHO05D006410 6.0e-34 149.4 144 55.6
FAN06G0036 Fragaria x ananassa HOM05D005062 ORTHO05D006410 3.9e-33 146.7 124 68.5
Cre09.g393250 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 1.1e-32 145.2 330 33.9
COL.COLO4_24555 Corchorus olitorius HOM05D005062 ORTHO05D006410 1.9e-32 144.4 99 78.8
Cfa010034 Carpinus fangiana HOM05D005062 ORTHO05D006410 9.6e-32 142.1 118 64.4
FAN01G2457 Fragaria x ananassa HOM05D005062 ORTHO05D006410 4.8e-31 139.8 82 91.5
Cre12.g521950 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 2.4e-30 137.5 338 30.5
FvH4_7g05870 Fragaria vesca HOM05D005062 ORTHO05D006410 1.5e-29 134.8 117 67.5
Ciclev10033893m.g Citrus clementina HOM05D005062 ORTHO05D006410 1.7e-28 131.3 92 73.9
FAN06G3794 Fragaria x ananassa HOM05D005062 ORTHO05D006410 4.9e-28 129.8 113 64.6
Ca_00262_v3 Cicer arietinum L. HOM05D005062 ORTHO05D006410 8.4e-28 129.0 157 47.1
COL.COLO4_24556 Corchorus olitorius HOM05D005062 ORTHO05D006410 1.1e-27 128.6 84 75.0
Cre06.g250450 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 3.2e-27 127.1 356 27.8
Cre02.g147450 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 4.2e-27 126.7 391 30.4
Psat6g129760 Pisum sativum HOM05D005062 ORTHO05D006410 8.7e-25 119.0 156 46.2
BraA02t06329Z Brassica rapa HOM05D005062 ORTHO05D006410 3.1e-22 110.5 80 75.0
Haze_23393 Corylus avellana HOM05D005062 ORTHO05D006410 1.5e-21 108.2 107 53.3
Hma1.2p1_0165F.1_g073310 Hydrangea macrophylla HOM05D005062 ORTHO05D006410 2.6e-21 107.5 66 81.8
Hma1.2p1_1068F.1_g253985 Hydrangea macrophylla HOM05D005062 ORTHO05D006410 4.5e-21 106.7 91 64.8
SEGI_26426 Sequoiadendron giganteum HOM05D005062 ORTHO05D006410 7.6e-21 105.9 106 53.8
GSVIVG01034679001 Vitis vinifera HOM05D005062 ORTHO05D006410 1.7e-20 104.8 68 82.4
Dinv42565 Davidia involucrata HOM05D005062 ORTHO05D006410 6.4e-20 102.8 113 53.1
Hund18750 Selenicereus undatus HOM05D005062 ORTHO05D006410 1.9e-19 101.3 148 41.2
RcHm_v2.0_Chr1g0332551 Rosa chinensis HOM05D005062 ORTHO05D006410 1.6e-18 98.2 68 73.5
FAN01G2288 Fragaria x ananassa HOM05D005062 ORTHO05D006410 2.6e-13 80.9 49 79.6
SEGI_01082 Sequoiadendron giganteum HOM05D005062 ORTHO05D006410 3.4e-13 80.5 59 71.2
RcHm_v2.0_Chr1g0332541 Rosa chinensis HOM05D005062 ORTHO05D006410 7.6e-13 79.3 62 66.1
SEGI_13629 Sequoiadendron giganteum HOM05D005062 ORTHO05D006410 1.3e-09 68.6 66 54.5
MCO11G881 Micromonas commoda HOM05D005062 ORTHO05D028578 5.1e-09 66.6 360 25.3
DCAR_017587 Daucus carota HOM05D000943 ORTHO05D008314 1.5e-08 65.1 358 23.7
Ca_12794_v3 Cicer arietinum L. HOM05D005062 ORTHO05D006410 1.9e-08 64.7 51 66.7
CDE08G0076 Ceratophyllum demersum HOM05D005062 ORTHO05D006410 4.3e-08 63.5 35 85.7
Hund10402 Selenicereus undatus HOM05D000943 ORTHO05D008314 4.3e-08 63.5 363 24.2
GSVIVG01014085001 Vitis vinifera HOM05D000943 ORTHO05D008314 5.7e-08 63.2 355 25.6
Cre02.g095086 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D028578 3.7e-07 60.5 235 26.4
Cre02.g095085 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D028578 1.8e-06 58.2 176 26.1
ATR0763G119 Amborella trichopoda HOM05D000943 ORTHO05D008314 3.1e-06 57.4 332 24.7
HPP92_018428 Vanilla planifolia HOM05D000943 ORTHO05D008314 9.0e-06 55.8 146 31.5


User provided reference genes

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