Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa010313 Carpinus fangiana HOM05D004893 ORTHO05D006320 0.0e+00 1622.1 809 100.0
Cfa013310 Carpinus fangiana HOM05D004893 ORTHO05D006320 0.0e+00 1577.8 809 96.7
Haze_03433 Corylus avellana HOM05D004893 ORTHO05D006320 0.0e+00 1503.0 815 92.8
QL02p098221 Quercus lobata HOM05D004893 ORTHO05D006320 0.0e+00 1332.0 810 80.2
TAR627G1078 Trochodendron aralioides HOM05D004893 ORTHO05D006320 0.0e+00 1202.2 810 72.0
Prupe.1G084200 Prunus persica HOM05D004893 ORTHO05D006320 0.0e+00 1201.8 814 73.0
Manes.06G023100 Manihot esculenta HOM05D004893 ORTHO05D006320 0.0e+00 1197.2 816 71.4
Atru.chr7.881 Acer truncatum HOM05D004893 ORTHO05D006320 0.0e+00 1176.4 820 70.9
Potri.006G166500 Populus trichocarpa HOM05D004893 ORTHO05D006320 0.0e+00 1176.4 816 70.8
GSVIVG01030738001 Vitis vinifera HOM05D004893 ORTHO05D006320 0.0e+00 1166.4 814 70.6
Potri.018G091100 Populus trichocarpa HOM05D004893 ORTHO05D006320 0.0e+00 1163.7 816 71.0
Hma1.2p1_0321F.1_g124570 Hydrangea macrophylla HOM05D004893 ORTHO05D006320 0.0e+00 1162.1 815 69.2
Ciclev10007405m.g Citrus clementina HOM05D004893 ORTHO05D006320 0.0e+00 1158.7 821 69.8
Thecc.09G175700 Theobroma cacao HOM05D004893 ORTHO05D006320 0.0e+00 1149.8 818 69.6
RcHm_v2.0_Chr4g0401591 Rosa chinensis HOM05D004893 ORTHO05D006320 0.0e+00 1148.3 811 69.5
Sabra06G0128100 Salix brachista HOM05D004893 ORTHO05D006320 0.0e+00 1144.4 878 65.6
MD13G1251600 Malus domestica HOM05D004893 ORTHO05D006320 0.0e+00 1142.5 815 69.4
Duzib150G0781 Durio zibethinus HOM05D004893 ORTHO05D006320 0.0e+00 1141.7 813 68.6
CSS0040034 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 0.0e+00 1140.6 817 69.2
CSS0008978 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 0.0e+00 1137.1 817 69.0
Sed0012025 Sechium edule HOM05D004893 ORTHO05D006320 0.0e+00 1135.6 816 68.5
ClCG06G013450 Citrullus lanatus HOM05D004893 ORTHO05D006320 0.0e+00 1135.2 817 69.4
Gorai.009G004800 Gossypium raimondii HOM05D004893 ORTHO05D006320 0.0e+00 1132.1 818 68.0
CsaV3_1G031710 Cucumis sativus L. HOM05D004893 ORTHO05D006320 0.0e+00 1131.3 816 68.6
Gohir.D05G004900 Gossypium hirsutum HOM05D004893 ORTHO05D006320 0.0e+00 1130.9 818 67.8
Gohir.A05G004264 Gossypium hirsutum HOM05D004893 ORTHO05D006320 0.0e+00 1127.1 818 67.6
Sed0012855 Sechium edule HOM05D004893 ORTHO05D006320 0.0e+00 1123.6 816 68.3
Eucgr.C02353 Eucalyptus grandis HOM05D004893 ORTHO05D006320 0.0e+00 1112.4 815 68.1
FAN12G2097 Fragaria x ananassa HOM05D004893 ORTHO05D006320 0.0e+00 1111.7 811 67.6
FAN22G1078 Fragaria x ananassa HOM05D004893 ORTHO05D006320 0.0e+00 1111.3 812 67.9
FvH4_4g07920 Fragaria vesca HOM05D004893 ORTHO05D006320 0.0e+00 1108.6 812 67.6
TWI34G0813 Tripterygium wilfordii HOM05D004893 ORTHO05D006320 0.0e+00 1107.0 816 66.4
Atru.chr13.1778 Acer truncatum HOM05D004893 ORTHO05D006320 0.0e+00 1102.8 785 69.9
MELO3C017452.2 Cucumis melo HOM05D004893 ORTHO05D006320 0.0e+00 1101.7 816 67.9
Nn7g38118 Nelumbo nucifera HOM05D004893 ORTHO05D006320 0.0e+00 1098.6 814 65.8
FAN07G0898 Fragaria x ananassa HOM05D004893 ORTHO05D006320 0.0e+00 1096.3 813 67.0
PGR044G2140 Punica granatum HOM05D004893 ORTHO05D006320 0.0e+00 1091.6 817 67.7
vmacro21776 Vaccinium macrocarpon HOM05D004893 ORTHO05D006320 0.0e+00 1090.5 814 65.4
Lalb_Chr07g0180551 Lupinus albus HOM05D004893 ORTHO05D006320 0.0e+00 1089.3 813 66.9
Lj4g0004814 Lotus japonicus HOM05D004893 ORTHO05D006320 0.0e+00 1088.6 809 66.3
CANSAT11G1129 Cannabis sativa HOM05D004893 ORTHO05D006320 0.0e+00 1078.9 826 65.0
FAN17G0276 Fragaria x ananassa HOM05D004893 ORTHO05D006320 1.7e-311 1072.4 875 62.3
Rhsim13G0225800 Rhododendron simsii HOM05D004893 ORTHO05D006320 1.9e-310 1068.9 851 62.4
arahy.Tifrunner.gnm1.ann1.B5GTII Arachis hypogaea HOM05D004893 ORTHO05D006320 4.3e-307 1057.7 812 65.1
Lj8C187G7 Lonicera japonica HOM05D004893 ORTHO05D006320 5.3e-305 1050.8 835 64.7
Aqoxy3G03036 Aquilegia oxysepala HOM05D004893 ORTHO05D006320 1.2e-304 1049.7 816 63.5
Peaxi162Scf00452g00844 Petunia axillaris HOM05D004893 ORTHO05D006320 2.6e-304 1048.5 815 64.3
VMungo1215G1808 Vigna mungo HOM05D004893 ORTHO05D006320 1.7e-303 1045.8 813 65.1
Ca_21236_v3 Cicer arietinum L. HOM05D004893 ORTHO05D006320 3.8e-303 1044.6 808 64.2
EL10Ac6g14738 Beta vulgaris HOM05D004893 ORTHO05D006320 1.2e-301 1039.6 808 63.1
COL.COLO4_37741 Corchorus olitorius HOM05D004893 ORTHO05D006320 2.7e-301 1038.5 839 62.9
TPR.G5437 Trifolium pratense HOM05D004893 ORTHO05D006320 1.3e-300 1036.2 809 63.5
DCAR_013745 Daucus carota HOM05D004893 ORTHO05D006320 2.3e-300 1035.4 812 62.6
arahy.Tifrunner.gnm1.ann1.48BVGN Arachis hypogaea HOM05D004893 ORTHO05D006320 3.9e-300 1034.6 816 64.1
Psat4g012800 Pisum sativum HOM05D004893 ORTHO05D006320 5.7e-299 1030.8 808 62.0
ECA240G4652 Erigeron canadensis HOM05D004893 ORTHO05D006320 4.1e-297 1024.6 816 62.3
Solyc07g066410.4 Solanum lycopersicum HOM05D004893 ORTHO05D006320 1.5e-296 1022.7 812 63.4
MSTRG.16114 Avicennia marina HOM05D004893 ORTHO05D006320 2.6e-296 1021.9 816 62.4
HanXRQChr09g0273501 Helianthus annuus HOM05D004893 ORTHO05D006320 5.9e-296 1020.8 811 61.9
Ah.09g231700 Amaranthus hybridus HOM05D004893 ORTHO05D006320 7.7e-296 1020.4 809 63.0
SalBow8G3700 Salvia bowleyana HOM05D004893 ORTHO05D006320 1.3e-295 1019.6 815 63.2
Sopen07g034580 Solanum pennellii HOM05D004893 ORTHO05D006320 1.1e-294 1016.5 815 62.9
Glyma.13G097400 Glycine max HOM05D004893 ORTHO05D006320 1.9e-294 1015.8 815 64.3
Phvul.003G144100 Phaseolus vulgaris HOM05D004893 ORTHO05D006320 1.9e-294 1015.8 811 63.0
Nitab4.5_0008437g0020 Nicotiana tabacum HOM05D004893 ORTHO05D006320 3.6e-293 1011.5 827 62.9
PSO063G4841 Papaver somniferum HOM05D004893 ORTHO05D006320 1.0e-292 1010.0 819 64.1
Cc05_g16000 Coffea canephora HOM05D004893 ORTHO05D006320 2.3e-292 1008.8 817 62.4
PSO782G3725 Papaver somniferum HOM05D004893 ORTHO05D006320 3.3e-291 1005.0 819 63.4
Glyma.17G062200 Glycine max HOM05D004893 ORTHO05D006320 4.4e-291 1004.6 816 63.5
Sp3g32370 Schrenkiella parvula HOM05D004893 ORTHO05D006320 4.8e-290 1001.1 820 61.1
AT2G18900 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 8.2e-290 1000.3 821 61.1
CiPaw.08G035400 Carya illinoinensis HOM05D004893 ORTHO05D006320 1.4e-289 999.6 583 84.4
Medtr4g127820 Medicago truncatula HOM05D004893 ORTHO05D006320 1.4e-289 999.6 808 61.9
Carub.0003s3314 Capsella rubella HOM05D004893 ORTHO05D006320 1.8e-289 999.2 822 61.4
Thhalv10022562m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 1.8e-289 999.2 820 61.1
THA.LOC104803489 Tarenaya hassleriana HOM05D004893 ORTHO05D006320 4.1e-289 998.0 815 60.9
AL3G53020 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 1.0e-287 993.4 821 60.8
A07p01760 Brassica napus HOM05D004893 ORTHO05D006320 3.6e-285 984.9 819 61.1
C07p03690 Brassica napus HOM05D004893 ORTHO05D006320 2.3e-284 982.2 819 60.7
BcaC06g36488 Brassica carinata HOM05D004893 ORTHO05D006320 8.8e-284 980.3 819 60.6
BolC7t40765H Brassica oleracea HOM05D004893 ORTHO05D006320 8.8e-284 980.3 819 60.6
BraA07t27976Z Brassica rapa HOM05D004893 ORTHO05D006320 2.0e-283 979.2 827 60.5
CARHR109460 Cardamine hirsuta HOM05D004893 ORTHO05D006320 1.3e-282 976.5 825 59.6
Lsat_1_v5_gn_7_72221 Lactuca sativa HOM05D004893 ORTHO05D006320 3.6e-277 958.4 829 59.8
Aa31LG8G15990 Aethionema arabicum HOM05D004893 ORTHO05D006320 1.8e-276 956.1 826 59.4
CDE08G1653 Ceratophyllum demersum HOM05D004893 ORTHO05D006320 1.1e-270 936.8 809 58.6
Nitab4.5_0001749g0080 Nicotiana tabacum HOM05D004893 ORTHO05D006320 5.9e-264 914.4 828 58.7
AUR62042215 Chenopodium quinoa HOM05D004893 ORTHO05D006320 2.8e-261 905.6 809 56.2
HPP92_012201 Vanilla planifolia HOM05D004893 ORTHO05D006320 4.4e-259 898.3 812 55.5
BcaB03g16682 Brassica carinata HOM05D004893 ORTHO05D006320 2.8e-258 895.6 818 56.5
ATR1098G135 Amborella trichopoda HOM05D004893 ORTHO05D006320 1.1e-257 893.6 818 56.8
Migut.M01562 Erythranthe guttata HOM05D004893 ORTHO05D006320 2.2e-250 869.4 818 55.5
Sc12g0007760 Simmondsia chinensis HOM05D004893 ORTHO05D006320 4.9e-250 868.2 623 66.1
Os12g0609800 Oryza sativa ssp. japonica HOM05D004893 ORTHO05D006320 4.3e-246 855.1 822 53.9
AUR62033061 Chenopodium quinoa HOM05D004893 ORTHO05D006320 1.6e-245 853.2 811 53.8
Hund06466 Selenicereus undatus HOM05D004893 ORTHO05D006320 4.0e-244 848.6 744 58.2
Zm00001eb031520 Zea mays HOM05D004893 ORTHO05D006320 8.3e-242 840.9 823 52.5
SGA_v2.0_scaffold186G40224 Striga asiatica HOM05D004893 ORTHO05D006320 6.6e-231 804.7 889 50.7
Actinidia07346 Actinidia chinensis HOM05D004893 ORTHO05D006320 9.6e-222 774.2 537 69.5
unitig_748.g7834 Utricularia gibba HOM05D004893 ORTHO05D006320 3.1e-220 769.2 813 49.3
AT3G26480 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 2.6e-195 686.4 820 46.8
AL7G19230 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 8.4e-194 681.4 822 46.6
SEGI_38878 Sequoiadendron giganteum HOM05D004893 ORTHO05D006320 3.9e-191 672.5 824 44.3
Thhalv10024453m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 2.5e-190 669.8 849 45.7
Dinv42517 Davidia involucrata HOM05D004893 ORTHO05D006320 3.3e-182 642.9 461 68.8
C01p06460 Brassica napus HOM05D004893 ORTHO05D006320 6.5e-178 628.6 825 45.6
Mapoly0156s0021 Marchantia polymorpha HOM05D004893 ORTHO05D006320 2.6e-163 580.1 845 39.9
MD16G1255900 Malus domestica HOM05D004893 ORTHO05D006320 5.0e-162 575.9 586 52.7
BolC1t00640H Brassica oleracea HOM05D004893 ORTHO05D006320 5.2e-159 565.8 819 42.2
Carub.0007s0802 Capsella rubella HOM05D004893 ORTHO05D006320 7.7e-155 552.0 678 45.6
MBI02_g12652_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 1.7e-154 550.8 479 60.5
BcaB07g31639 Brassica carinata HOM05D004893 ORTHO05D006320 7.2e-145 518.8 817 41.6
AagrBONN_evm.TU.Sc2ySwM_228.3065 Anthoceros agrestis HOM05D004893 ORTHO05D006320 6.8e-143 512.3 836 38.4
Pp3c7_4120 Physcomitrium patens HOM05D004893 ORTHO05D006320 7.0e-140 502.3 856 38.0
BcaC09g52044 Brassica carinata HOM05D004893 ORTHO05D006320 2.3e-138 497.3 826 40.1
Cpa.g.sc523.1 Carica papaya HOM05D004893 ORTHO05D006320 2.4e-132 477.2 338 69.5
SMO356G0292 Selaginella moellendorffii HOM05D004893 ORTHO05D006320 7.8e-123 445.7 836 35.5
Oeu016137.1 Olea europaea HOM05D004893 ORTHO05D001543 3.1e-103 380.6 398 52.0
CBR_g49376 Chara braunii HOM05D004893 ORTHO05D006320 4.8e-96 356.7 711 30.9
CARHR240500 Cardamine hirsuta HOM05D004893 ORTHO05D006320 4.3e-89 333.6 370 48.6
BcaC04g22880 Brassica carinata HOM05D004893 ORTHO05D006320 3.2e-68 264.2 280 52.5
BolC9t54332H Brassica oleracea HOM05D004893 ORTHO05D006320 3.6e-67 260.8 279 52.0
Cre04.g215350 Chlamydomonas reinhardtii HOM05D004893 ORTHO05D006320 3.6e-67 260.8 747 29.0
C09p14300 Brassica napus HOM05D004893 ORTHO05D006320 3.9e-66 257.3 279 52.0
Dinv42518 Davidia involucrata HOM05D004893 ORTHO05D006320 1.4e-63 248.8 196 65.3
RcHm_v2.0_Chr4g0401681 Rosa chinensis HOM05D004893 ORTHO05D006320 1.3e-61 242.3 156 74.4
CANSAT11G1181 Cannabis sativa HOM05D004893 ORTHO05D006320 1.0e-53 216.1 214 53.3
MBI02_g33733_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 1.6e-51 208.8 157 66.9
PRCOL_00005731 Prasinoderma coloniale HOM05D004893 ORTHO05D006320 9.1e-47 193.0 850 23.8
RcHm_v2.0_Chr4g0401691 Rosa chinensis HOM05D004893 ORTHO05D006320 4.0e-42 177.6 138 60.9
Cpa.g.sc95.47 Carica papaya HOM05D004893 ORTHO05D006320 8.5e-37 159.8 132 55.3
MCO01G002 Micromonas commoda HOM05D004893 ORTHO05D006320 9.4e-36 156.4 464 30.2
SHI02896 Sapria himalayana HOM05D004893 ORTHO05D006320 3.5e-30 137.9 104 62.5
Glyma.11G074200 Glycine max HOM05D004893 ORTHO05D006320 4.1e-23 114.4 86 64.0
BolC9t54333H Brassica oleracea HOM05D004893 ORTHO05D006320 2.6e-17 95.1 60 73.3
BraA09t36855Z Brassica rapa HOM05D004893 ORTHO05D006320 2.2e-16 92.0 115 44.3
A09p12110 Brassica napus HOM05D004893 ORTHO05D006320 2.4e-15 88.6 115 43.5
EL10Ac6g14737 Beta vulgaris HOM05D004893 ORTHO05D006320 3.2e-15 88.2 62 69.4
MBI12_g20565_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 2.7e-14 85.1 70 54.3
Cfa026329 Carpinus fangiana HOM05D004893 ORTHO05D006320 2.5e-12 78.6 102 40.2
arahy.Tifrunner.gnm1.ann1.F8045A Arachis hypogaea HOM05D062897 ORTHO05D023720 1.4e-10 72.8 48 70.8
arahy.Tifrunner.gnm1.ann1.BHNU0I Arachis hypogaea HOM05D004893 ORTHO05D006320 2.3e-10 72.0 47 68.1
arahy.Tifrunner.gnm1.ann1.09RZEI Arachis hypogaea HOM05D004893 ORTHO05D006320 4.0e-10 71.2 47 68.1
Lsat_1_v5_gn_5_51440 Lactuca sativa HOM05D004893 ORTHO05D048382 5.2e-10 70.9 96 42.7
Cre06.g254150 Chlamydomonas reinhardtii HOM05D004669 ORTHO05D005767 1.3e-08 66.2 373 24.4
arahy.Tifrunner.gnm1.ann1.NVD3GI Arachis hypogaea HOM05D001215 ORTHO05D001387 1.4e-07 62.8 102 39.2
CARHR240490 Cardamine hirsuta HOM05D004893 ORTHO05D006320 3.2e-07 61.6 86 38.4


User provided reference genes

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