Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa010304 Carpinus fangiana HOM05D012552 ORTHO05D018926 1.3e-260 902.5 464 100.0
Cfa010460 Carpinus fangiana HOM05D012552 ORTHO05D018926 3.1e-201 705.3 497 77.5
Cfa005731 Carpinus fangiana HOM05D012552 ORTHO05D018926 4.5e-75 286.2 303 55.8
Cfa007662 Carpinus fangiana HOM05D012552 ORTHO05D124324 8.3e-45 185.7 104 96.2
Cfa010327 Carpinus fangiana HOM05D012552 ORTHO05D018926 5.4e-36 156.4 218 44.5
Haze_10778 Corylus avellana HOM05D012552 ORTHO05D018926 3.9e-34 150.2 287 39.0
Cfa006091 Carpinus fangiana HOM05D006789 ORTHO05D008460 2.9e-29 134.0 87 81.6
Cfa003003 Carpinus fangiana HOM05D012552 ORTHO05D018926 1.2e-27 128.6 105 72.4
Haze_03403 Corylus avellana HOM05D006789 ORTHO05D008460 7.9e-19 99.4 71 78.9
Cfa010449 Carpinus fangiana HOM05D006789 ORTHO05D008460 1.3e-18 98.6 71 78.9
Manes.10G064901 Manihot esculenta HOM05D006789 ORTHO05D008460 7.4e-17 92.8 85 64.7
Gohir.D06G178700 Gossypium hirsutum HOM05D006789 ORTHO05D008460 9.6e-17 92.4 83 66.3
Gorai.N006000 Gossypium raimondii HOM05D006789 ORTHO05D008460 9.6e-17 92.4 83 66.3
Gorai.N006500 Gossypium raimondii HOM05D006789 ORTHO05D008460 9.6e-17 92.4 83 66.3
Gorai.010G208300 Gossypium raimondii HOM05D006789 ORTHO05D008460 1.3e-16 92.0 85 64.7
COL.COLO4_28906 Corchorus olitorius HOM05D006789 ORTHO05D008460 2.1e-16 91.3 85 64.7
Duzib106G0468 Durio zibethinus HOM05D006789 ORTHO05D008460 2.8e-16 90.9 83 63.9
Thecc.10G129500 Theobroma cacao HOM05D006789 ORTHO05D008460 2.8e-16 90.9 83 65.1
Gohir.A06G170900 Gossypium hirsutum HOM05D006789 ORTHO05D008460 3.6e-16 90.5 83 65.1
Ciclev10029282m.g Citrus clementina HOM05D006789 ORTHO05D008460 4.8e-16 90.1 85 62.4
arahy.Tifrunner.gnm1.ann1.G6AZCI Arachis hypogaea HOM05D006789 ORTHO05D008460 1.4e-15 88.6 94 56.4
arahy.Tifrunner.gnm1.ann1.KMQ9TB Arachis hypogaea HOM05D006789 ORTHO05D008460 1.4e-15 88.6 94 56.4
Eucgr.J00312 Eucalyptus grandis HOM05D006789 ORTHO05D008460 1.4e-15 88.6 83 60.2
Lalb_Chr15g0079361 Lupinus albus HOM05D006789 ORTHO05D008460 1.4e-15 88.6 94 58.5
Gohir.A06G170906 Gossypium hirsutum HOM05D006789 ORTHO05D008460 1.8e-15 88.2 85 63.5
TAR633G0905 Trochodendron aralioides HOM05D006789 ORTHO05D008460 5.3e-15 86.7 85 61.2
Lj3g0008710 Lotus japonicus HOM05D006789 ORTHO05D008460 6.9e-15 86.3 85 61.2
Glyma.06G315000 Glycine max HOM05D006789 ORTHO05D008460 9.0e-15 85.9 83 61.4
CiPaw.14G037500 Carya illinoinensis HOM05D006789 ORTHO05D008460 1.2e-14 85.5 83 62.7
PGR044G1098 Punica granatum HOM05D006789 ORTHO05D008460 1.2e-14 85.5 100 54.0
Potri.008G012100 Populus trichocarpa HOM05D006789 ORTHO05D008460 1.5e-14 85.1 83 61.4
Dinv24597 Davidia involucrata HOM05D006789 ORTHO05D008460 2.0e-14 84.7 85 62.4
GSVIVG01027313001 Vitis vinifera HOM05D006789 ORTHO05D008460 2.0e-14 84.7 85 60.0
MSTRG.5084 Avicennia marina HOM05D006789 ORTHO05D008460 2.6e-14 84.3 85 60.0
Cfa004473 Carpinus fangiana HOM05D012552 ORTHO05D122921 2.6e-14 84.3 164 45.7
Glyma.04G129000 Glycine max HOM05D006789 ORTHO05D008460 3.4e-14 84.0 83 61.4
TPR.G25521 Trifolium pratense HOM05D006789 ORTHO05D008460 3.4e-14 84.0 83 61.4
MBI19_g19122_MAGBIO Magnolia biondii HOM05D006789 ORTHO05D008460 7.6e-14 82.8 83 59.0
Sabra08G0007400 Salix brachista HOM05D006789 ORTHO05D008460 7.6e-14 82.8 83 60.2
Gohir.D06G178832 Gossypium hirsutum HOM05D006789 ORTHO05D008460 9.9e-14 82.4 77 64.9
Medtr3g006790 Medicago truncatula HOM05D006789 ORTHO05D008460 1.3e-13 82.0 83 57.8
TWI38G1707 Tripterygium wilfordii HOM05D006789 ORTHO05D008460 1.3e-13 82.0 83 59.0
Ca_14025_v3 Cicer arietinum L. HOM05D006789 ORTHO05D008460 2.2e-13 81.3 68 67.6
Cfa014973 Carpinus fangiana HOM05D012552 ORTHO05D018926 2.9e-13 80.9 265 32.1
Atru.chr3.2036 Acer truncatum HOM05D006789 ORTHO05D008460 6.4e-13 79.7 85 55.3
Aqoxy1G00021 Aquilegia oxysepala HOM05D006789 ORTHO05D008460 8.4e-13 79.3 85 56.5
MBI05_g14944_MAGBIO Magnolia biondii HOM05D006789 ORTHO05D008460 8.4e-13 79.3 77 58.4
Actinidia19614 Actinidia chinensis HOM05D000583 ORTHO05D000442 1.1e-12 79.0 89 59.6
Prupe.2G061000 Prunus persica HOM05D006789 ORTHO05D008460 1.1e-12 79.0 89 56.2
CANSAT56G4131 Cannabis sativa HOM05D006789 ORTHO05D008460 1.9e-12 78.2 85 54.1
Sp6g37890 Schrenkiella parvula HOM05D006789 ORTHO05D008460 1.9e-12 78.2 167 38.3
SGA_v2.0_scaffold196G40996 Striga asiatica HOM05D006789 ORTHO05D008460 1.9e-12 78.2 85 56.5
VMungo0647G0732 Vigna mungo HOM05D006789 ORTHO05D008460 2.4e-12 77.8 94 53.2
Hma1.2p1_0892F.1_g233210 Hydrangea macrophylla HOM05D006789 ORTHO05D008460 3.2e-12 77.4 85 57.6
SGA_v2.0_scaffold196G40989 Striga asiatica HOM05D006789 ORTHO05D008460 3.2e-12 77.4 85 55.3
THA.LOC104826955 Tarenaya hassleriana HOM05D006789 ORTHO05D008460 3.2e-12 77.4 101 48.5
CSS0000309 Camellia sinensis var. sinensis HOM05D006789 ORTHO05D008460 5.5e-12 76.6 81 60.5
DCAR_006626 Daucus carota HOM05D006789 ORTHO05D008460 5.5e-12 76.6 83 54.2
Haze_06536 Corylus avellana HOM05D000515 ORTHO05D001911 7.1e-12 76.3 86 54.7
Phvul.008G161900 Phaseolus vulgaris HOM05D006789 ORTHO05D008460 7.1e-12 76.3 94 52.1
SalBow4G0168 Salvia bowleyana HOM05D006789 ORTHO05D008460 7.1e-12 76.3 85 55.3
Hma1.2p1_0892F.1_g233220 Hydrangea macrophylla HOM05D006789 ORTHO05D008460 2.1e-11 74.7 81 58.0
Oeu013184.1 Olea europaea HOM05D006789 ORTHO05D008460 6.0e-11 73.2 100 49.0
MBI06_g23363_MAGBIO Magnolia biondii HOM05D006789 ORTHO05D008460 7.9e-11 72.8 79 55.7
A10p31220 Brassica napus HOM05D006789 ORTHO05D008460 1.3e-10 72.0 85 54.1
C09p71840 Brassica napus HOM05D006789 ORTHO05D008460 1.3e-10 72.0 85 54.1
BolC9t59933H Brassica oleracea HOM05D006789 ORTHO05D008460 1.3e-10 72.0 85 54.1
BraA10t45166Z Brassica rapa HOM05D006789 ORTHO05D008460 1.3e-10 72.0 85 54.1
ClCG05G022140 Citrullus lanatus HOM05D006789 ORTHO05D008460 1.3e-10 72.0 85 50.6
Nn2g14746 Nelumbo nucifera HOM05D006789 ORTHO05D008460 1.3e-10 72.0 94 51.1
BcaC06g32200 Brassica carinata HOM05D006789 ORTHO05D008460 1.8e-10 71.6 85 54.1
Lj7C491T7 Lonicera japonica HOM05D006789 ORTHO05D008460 1.8e-10 71.6 79 58.2
MD02G1265000 Malus domestica HOM05D006789 ORTHO05D008460 1.8e-10 71.6 92 50.0
AT5G04910 Arabidopsis thaliana HOM05D006789 ORTHO05D008460 2.3e-10 71.2 83 54.2
Thhalv10014633m.g Eutrema salsugineum HOM05D006789 ORTHO05D008460 3.0e-10 70.9 85 54.1
Cfa000389 Carpinus fangiana HOM05D000515 ORTHO05D001911 3.9e-10 70.5 140 42.1
Sc22g0002280 Simmondsia chinensis HOM05D006789 ORTHO05D001455 3.9e-10 70.5 83 55.4
Carub.0010s0003 Capsella rubella HOM05D006789 ORTHO05D008460 5.1e-10 70.1 91 50.5
AUR62014306 Chenopodium quinoa HOM05D006789 ORTHO05D008460 5.1e-10 70.1 83 51.8
AL6G14600 Arabidopsis lyrata HOM05D006789 ORTHO05D008460 6.7e-10 69.7 83 54.2
Carub.0006s0385 Capsella rubella HOM05D006789 ORTHO05D008460 8.7e-10 69.3 83 54.2
CDE08G0307 Ceratophyllum demersum HOM05D006789 ORTHO05D008460 2.5e-09 67.8 85 49.4
Cc02_g32010 Coffea canephora HOM05D006789 ORTHO05D008460 2.5e-09 67.8 83 53.0
MELO3C012309.2 Cucumis melo HOM05D006789 ORTHO05D008460 2.5e-09 67.8 94 45.7
QL05p037607 Quercus lobata HOM05D000515 ORTHO05D001911 4.3e-09 67.0 62 58.1
Sed0016797 Sechium edule HOM05D006789 ORTHO05D008460 4.3e-09 67.0 80 45.0
CsaV3_5G034990 Cucumis sativus L. HOM05D006789 ORTHO05D008460 5.6e-09 66.6 94 45.7
Peaxi162Scf00217g00626 Petunia axillaris HOM05D006789 ORTHO05D008460 5.6e-09 66.6 100 47.0
Hund00694 Selenicereus undatus HOM05D006789 ORTHO05D008460 5.6e-09 66.6 93 50.5
Nitab4.5_0004033g0070 Nicotiana tabacum HOM05D006789 ORTHO05D008460 7.4e-09 66.2 85 54.1
Rhsim07G0072100 Rhododendron simsii HOM05D006789 ORTHO05D008460 7.4e-09 66.2 68 60.3
Zm00001eb128210 Zea mays HOM05D006789 ORTHO05D008460 7.4e-09 66.2 85 48.2
HanXRQChr06g0181521 Helianthus annuus HOM05D006789 ORTHO05D008460 1.3e-08 65.5 75 53.3
vmacro13786 Vaccinium macrocarpon HOM05D006789 ORTHO05D008460 2.1e-08 64.7 103 48.5
Nitab4.5_0002156g0010 Nicotiana tabacum HOM05D006789 ORTHO05D008460 2.8e-08 64.3 85 51.8
Lsat_1_v5_gn_2_28141 Lactuca sativa HOM05D006789 ORTHO05D008460 3.7e-08 63.9 75 50.7
Migut.N01877 Erythranthe guttata HOM05D006789 ORTHO05D008460 1.4e-07 62.0 73 52.1
Os01g0265700 Oryza sativa ssp. japonica HOM05D006789 ORTHO05D008460 1.4e-07 62.0 85 44.7
ATR0068G087 Amborella trichopoda HOM05D006789 ORTHO05D008460 1.8e-07 61.6 79 48.1
EL10Ac4g08777 Beta vulgaris HOM05D006789 ORTHO05D008460 4.0e-07 60.5 83 48.2
PSO384G0303 Papaver somniferum HOM05D006789 ORTHO05D008460 4.0e-07 60.5 83 48.2
RcHm_v2.0_Chr1g0331321 Rosa chinensis HOM05D006789 ORTHO05D008460 4.0e-07 60.5 87 46.0
Solyc10g039380.2 Solanum lycopersicum HOM05D006789 ORTHO05D008460 5.3e-07 60.1 101 45.5
SEGI_32817 Sequoiadendron giganteum HOM05D006789 ORTHO05D008460 9.0e-07 59.3 85 43.5
Sopen10g012840 Solanum pennellii HOM05D006789 ORTHO05D008460 1.2e-06 58.9 101 44.6
AUR62034099 Chenopodium quinoa HOM05D006789 ORTHO05D008460 1.5e-06 58.5 74 51.4
Psat5g230200 Pisum sativum HOM05D006789 ORTHO05D008460 1.5e-06 58.5 50 66.0
ECA238G4254 Erigeron canadensis HOM05D006789 ORTHO05D008460 2.0e-06 58.2 75 49.3
unitig_26.g9495 Utricularia gibba HOM05D006789 ORTHO05D008460 2.0e-06 58.2 77 48.1
FvH4_7g05010 Fragaria vesca HOM05D006789 ORTHO05D008460 2.6e-06 57.8 84 44.0
Phvul.005G010900 Phaseolus vulgaris HOM05D006789 ORTHO05D008460 2.6e-06 57.8 91 46.2
PSO339G2606 Papaver somniferum HOM05D006789 ORTHO05D008460 3.4e-06 57.4 83 47.0
Aa31LG11G5790 Aethionema arabicum HOM05D006789 ORTHO05D008460 7.6e-06 56.2 70 51.4
FAN03G1759 Fragaria x ananassa HOM05D006789 ORTHO05D008460 7.6e-06 56.2 77 45.5
FAN01G0280 Fragaria x ananassa HOM05D006789 ORTHO05D008460 1.0e-05 55.8 78 44.9


User provided reference genes

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