Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa010291 Carpinus fangiana HOM05D006101 ORTHO05D007422 1.1e-262 909.4 455 100.0
Haze_23705 Corylus avellana HOM05D006101 ORTHO05D007422 5.4e-238 827.4 453 92.5
CiPaw.13G123600 Carya illinoinensis HOM05D006101 ORTHO05D007422 1.2e-210 736.5 452 81.2
QL01p015279 Quercus lobata HOM05D006101 ORTHO05D007422 1.3e-207 726.5 454 79.7
GSVIVG01031479001 Vitis vinifera HOM05D006101 ORTHO05D007422 4.0e-177 625.2 456 68.6
Atru.chr3.3528 Acer truncatum HOM05D006101 ORTHO05D007422 1.4e-169 600.1 451 66.3
Dinv16214 Davidia involucrata HOM05D006101 ORTHO05D007422 2.6e-168 595.9 457 66.1
TAR636G3121 Trochodendron aralioides HOM05D006101 ORTHO05D007422 4.2e-166 588.6 468 64.5
Prupe.6G111800 Prunus persica HOM05D006101 ORTHO05D007422 5.5e-166 588.2 457 63.9
Manes.04G013700 Manihot esculenta HOM05D006101 ORTHO05D007422 2.3e-164 582.8 460 64.3
MD11G1147300 Malus domestica HOM05D006101 ORTHO05D007422 2.5e-163 579.3 452 62.8
Potri.009G006200 Populus trichocarpa HOM05D006101 ORTHO05D007422 4.3e-163 578.6 456 63.4
TWI75G1238 Tripterygium wilfordii HOM05D006101 ORTHO05D007422 1.6e-162 576.6 453 64.0
ClCG03G002470 Citrullus lanatus HOM05D006101 ORTHO05D007422 5.9e-160 568.2 456 61.6
Thecc.09G350300 Theobroma cacao HOM05D006101 ORTHO05D007422 5.9e-160 568.2 460 63.5
CSS0020443 Camellia sinensis var. sinensis HOM05D006101 ORTHO05D007422 7.6e-160 567.8 455 64.2
CsaV3_1G013150 Cucumis sativus L. HOM05D006101 ORTHO05D007422 1.7e-159 566.6 456 61.6
Duzib150G0708 Durio zibethinus HOM05D006101 ORTHO05D007422 2.2e-159 566.2 461 63.8
Sed0008610 Sechium edule HOM05D006101 ORTHO05D007422 3.2e-158 562.4 455 61.1
COL.COLO4_11107 Corchorus olitorius HOM05D006101 ORTHO05D007422 1.5e-152 543.5 454 61.7
FvH4_3g30770 Fragaria vesca HOM05D006101 ORTHO05D007422 1.5e-152 543.5 457 61.5
Gohir.A03G029500 Gossypium hirsutum HOM05D006101 ORTHO05D007422 3.8e-151 538.9 462 61.5
Gohir.D03G139000 Gossypium hirsutum HOM05D006101 ORTHO05D007422 6.5e-151 538.1 462 61.3
THA.LOC104800579 Tarenaya hassleriana HOM05D006101 ORTHO05D007422 2.5e-150 536.2 456 58.3
Hma1.2p1_0051F.1_g029390 Hydrangea macrophylla HOM05D006101 ORTHO05D007422 3.2e-150 535.8 434 62.9
Gorai.003G145800 Gossypium raimondii HOM05D006101 ORTHO05D007422 1.6e-149 533.5 462 61.0
RcHm_v2.0_Chr5g0056961 Rosa chinensis HOM05D006101 ORTHO05D007422 2.1e-149 533.1 462 60.6
Actinidia03696 Actinidia chinensis HOM05D006101 ORTHO05D007422 9.7e-147 524.2 459 59.3
CSS0026133 Camellia sinensis var. sinensis HOM05D006101 ORTHO05D007422 3.7e-146 522.3 411 64.5
CAN.G546.34 Capsicum annuum HOM05D006101 ORTHO05D007422 8.2e-146 521.2 458 58.1
Phvul.011G085500 Phaseolus vulgaris HOM05D006101 ORTHO05D007422 8.2e-146 521.2 459 55.3
FAN11G1700 Fragaria x ananassa HOM05D002446 ORTHO05D007422 2.4e-145 519.6 465 60.2
CANSAT56G2622 Cannabis sativa HOM05D006101 ORTHO05D007422 1.3e-143 513.8 430 61.6
Ciclev10028403m.g Citrus clementina HOM05D006101 ORTHO05D007422 8.5e-143 511.1 456 57.0
Lalb_Chr19g0136961 Lupinus albus HOM05D006101 ORTHO05D007422 1.9e-142 510.0 461 55.1
Lj3g0002990 Lotus japonicus HOM05D006101 ORTHO05D007422 2.5e-142 509.6 455 54.5
MELO3C004994.2 Cucumis melo HOM05D006101 ORTHO05D007422 9.4e-142 507.7 495 53.7
FAN21G1086 Fragaria x ananassa HOM05D006101 ORTHO05D007422 9.4e-142 507.7 457 60.0
FAN16G0923 Fragaria x ananassa HOM05D006101 ORTHO05D007422 2.7e-141 506.1 462 59.1
VMungo1127G1509 Vigna mungo HOM05D006101 ORTHO05D007422 2.7e-141 506.1 462 55.0
Solyc11g066340.2 Solanum lycopersicum HOM05D006101 ORTHO05D007422 4.7e-141 505.4 464 55.6
Sopen11g026080 Solanum pennellii HOM05D006101 ORTHO05D007422 4.7e-141 505.4 464 55.4
Lj2C1009G5 Lonicera japonica HOM05D006101 ORTHO05D007422 6.1e-141 505.0 496 56.0
FAN25G1259 Fragaria x ananassa HOM05D006101 ORTHO05D007422 2.3e-140 503.1 463 59.2
Ca_30122_v3 Cicer arietinum L. HOM05D006101 ORTHO05D007422 5.7e-139 498.4 455 54.7
PGSC0003DMG400000413 Solanum tuberosum HOM05D006101 ORTHO05D007422 5.7e-139 498.4 461 56.0
Glyma.11G193400 Glycine max HOM05D006101 ORTHO05D007422 7.4e-139 498.0 455 54.9
Sp4g10940 Schrenkiella parvula HOM05D006101 ORTHO05D007422 2.2e-138 496.5 452 54.4
Carub.0004s0893 Capsella rubella HOM05D006101 ORTHO05D007422 2.8e-138 496.1 453 54.7
Psat0s1387g0080 Pisum sativum HOM05D006101 ORTHO05D007422 3.1e-137 492.7 453 54.5
PGR102G2892 Punica granatum HOM05D006101 ORTHO05D007422 4.1e-137 492.3 449 56.1
Medtr4g057493 Medicago truncatula HOM05D006101 ORTHO05D007422 7.0e-137 491.5 459 53.4
Eucgr.B03934 Eucalyptus grandis HOM05D006101 ORTHO05D007422 2.6e-136 489.6 454 57.5
HanXRQChr13g0396251 Helianthus annuus HOM05D006101 ORTHO05D007422 4.5e-136 488.8 458 55.0
Lsat_1_v5_gn_6_44300 Lactuca sativa HOM05D006101 ORTHO05D007422 1.7e-135 486.9 455 55.2
Nitab4.5_0000329g0130 Nicotiana tabacum HOM05D006101 ORTHO05D007422 2.2e-135 486.5 450 54.4
BcaB02g10150 Brassica carinata HOM05D006101 ORTHO05D007422 6.5e-135 485.0 452 53.1
AT2G28130 Arabidopsis thaliana HOM05D006101 ORTHO05D007422 8.5e-135 484.6 454 53.3
BcaC02g10947 Brassica carinata HOM05D006101 ORTHO05D007422 5.5e-134 481.9 453 53.6
Ca_02469_v3 Cicer arietinum L. HOM05D006101 ORTHO05D007422 5.5e-134 481.9 455 54.1
Cc01_g10370 Coffea canephora HOM05D006101 ORTHO05D007422 3.6e-133 479.2 468 53.6
Sabra09G0003500 Salix brachista HOM05D006101 ORTHO05D007422 6.7e-132 474.9 380 61.6
Rhsim01G0211100 Rhododendron simsii HOM05D006101 ORTHO05D007422 1.5e-131 473.8 463 55.5
Aqoxy1G01111 Aquilegia oxysepala HOM05D006101 ORTHO05D007422 5.7e-131 471.9 465 53.8
PSO063G0796 Papaver somniferum HOM05D006101 ORTHO05D007422 9.7e-131 471.1 468 54.1
PSO339G3309 Papaver somniferum HOM05D006101 ORTHO05D007422 9.7e-131 471.1 467 54.2
AL4G22020 Arabidopsis lyrata HOM05D006101 ORTHO05D007422 2.8e-130 469.5 452 53.3
Migut.D02287 Erythranthe guttata HOM05D006101 ORTHO05D007422 3.7e-130 469.2 466 53.9
Aa31LG5G8010 Aethionema arabicum HOM05D006101 ORTHO05D007422 2.4e-129 466.5 452 53.5
C04p23380 Brassica napus HOM05D006101 ORTHO05D007422 1.2e-128 464.2 453 52.8
BolC4t23840H Brassica oleracea HOM05D006101 ORTHO05D007422 2.7e-128 463.0 453 53.0
MSTRG.21091 Avicennia marina HOM05D006101 ORTHO05D007422 3.5e-128 462.6 457 52.7
Peaxi162Scf00086g01114 Petunia axillaris HOM05D006101 ORTHO05D007422 3.5e-128 462.6 445 53.7
CARHR120970 Cardamine hirsuta HOM05D006101 ORTHO05D007422 2.9e-127 459.5 453 51.7
Oeu007313.2 Olea europaea HOM05D006101 ORTHO05D007422 4.7e-125 452.2 490 50.8
A07p18660 Brassica napus HOM05D006101 ORTHO05D007422 3.0e-124 449.5 465 50.3
Thhalv10016576m.g Eutrema salsugineum HOM05D006101 ORTHO05D007422 2.0e-123 446.8 469 50.5
BraA07t29579Z Brassica rapa HOM05D006101 ORTHO05D007422 9.8e-123 444.5 453 50.6
Sc06g0010850 Simmondsia chinensis HOM05D006101 ORTHO05D007422 5.4e-121 438.7 458 50.2
Nn2g13844 Nelumbo nucifera HOM05D006101 ORTHO05D007422 1.6e-120 437.2 401 56.4
SalBow4G3219 Salvia bowleyana HOM05D006101 ORTHO05D007422 8.0e-117 424.9 461 50.3
vmacro14396 Vaccinium macrocarpon HOM05D006101 ORTHO05D007422 1.2e-115 421.0 444 52.0
ATR0088G017 Amborella trichopoda HOM05D006101 ORTHO05D007422 6.3e-114 415.2 435 49.2
CDE09G0605 Ceratophyllum demersum HOM05D006101 ORTHO05D007422 1.4e-113 414.1 460 49.1
EL10Ac9g22610 Beta vulgaris HOM05D006101 ORTHO05D007422 1.3e-111 407.5 465 48.0
Dinv29372 Davidia involucrata HOM05D006101 ORTHO05D007422 1.5e-110 404.1 334 60.2
MBI13_g39328_MAGBIO Magnolia biondii HOM05D006101 ORTHO05D007422 6.1e-109 398.7 561 42.6
SGA_v2.0_scaffold27G11561 Striga asiatica HOM05D006101 ORTHO05D007422 2.3e-108 396.7 467 47.3
ECA233G2185 Erigeron canadensis HOM05D006101 ORTHO05D007422 1.2e-107 394.4 458 48.0
AUR62029180 Chenopodium quinoa HOM05D006101 ORTHO05D007422 1.0e-103 381.3 470 45.7
Os01g0241100 Oryza sativa ssp. japonica HOM05D006101 ORTHO05D007422 5.2e-100 369.0 458 46.7
arahy.Tifrunner.gnm1.ann1.P58SHS Arachis hypogaea HOM05D006101 ORTHO05D007422 1.7e-95 354.0 478 43.7
arahy.Tifrunner.gnm1.ann1.V5BWPF Arachis hypogaea HOM05D006101 ORTHO05D007422 4.7e-93 345.9 463 44.3
arahy.Tifrunner.gnm1.ann1.66BK9V Arachis hypogaea HOM05D006101 ORTHO05D007422 8.1e-93 345.1 463 43.0
HPP92_020176 Vanilla planifolia HOM05D006101 ORTHO05D007422 1.4e-92 344.4 456 42.3
Glyma.12G080600 Glycine max HOM05D006101 ORTHO05D007422 1.8e-92 344.0 462 41.6
DCAR_018770 Daucus carota HOM05D006101 ORTHO05D007422 8.9e-92 341.7 369 50.1
Nitab4.5_0003880g0040 Nicotiana tabacum HOM05D006101 ORTHO05D007422 2.2e-90 337.0 466 42.5
Hund08365 Selenicereus undatus HOM05D006101 ORTHO05D007422 4.0e-84 316.2 462 40.9
unitig_747.g21973 Utricularia gibba HOM05D006101 ORTHO05D007422 7.8e-80 302.0 354 46.6
Ah.01g014140 Amaranthus hybridus HOM05D006101 ORTHO05D007422 1.1e-78 298.1 477 39.2
Zm00001eb118850 Zea mays HOM05D006101 ORTHO05D007422 1.3e-74 284.6 358 45.5
AUR62014957 Chenopodium quinoa HOM05D006101 ORTHO05D007422 1.0e-71 275.0 382 41.9
Hma1.2p1_0051F.1_g029400 Hydrangea macrophylla HOM05D006101 ORTHO05D007422 3.0e-71 273.5 214 65.0
HanXRQChr04g0111151 Helianthus annuus HOM05D006101 ORTHO05D007422 4.6e-64 249.6 307 46.3
VMungo1215G2511 Vigna mungo HOM05D006101 ORTHO05D007422 2.1e-56 224.2 316 42.4
SHI06228 Sapria himalayana HOM05D006101 ORTHO05D007422 4.6e-48 196.4 208 51.0
arahy.Tifrunner.gnm1.ann1.KM9ELV Arachis hypogaea HOM05D006101 ORTHO05D007422 7.7e-43 179.1 270 40.7
Pp3c4_7040 Physcomitrium patens HOM05D006101 ORTHO05D007422 2.0e-35 154.5 440 29.5
SEGI_30921 Sequoiadendron giganteum HOM05D006101 ORTHO05D007422 1.0e-31 142.1 217 34.6
arahy.Tifrunner.gnm1.ann1.PH2QKZ Arachis hypogaea HOM05D006101 ORTHO05D007422 1.1e-30 138.7 236 38.1
Mapoly0094s0062 Marchantia polymorpha HOM05D006101 ORTHO05D007422 5.3e-28 129.8 327 26.9
Actinidia20431 Actinidia chinensis HOM05D006101 ORTHO05D007422 7.0e-28 129.4 124 50.8
SHI06230 Sapria himalayana HOM05D006101 ORTHO05D007422 1.5e-27 128.3 135 49.6
arahy.Tifrunner.gnm1.ann1.EU9JMW Arachis hypogaea HOM05D006101 ORTHO05D007422 5.0e-26 123.2 179 42.5
arahy.Tifrunner.gnm1.ann1.88XJ4T Arachis hypogaea HOM05D006101 ORTHO05D007422 1.0e-23 115.5 109 55.0
SEGI_35146 Sequoiadendron giganteum HOM05D006101 ORTHO05D007422 3.9e-23 113.6 132 46.2
AagrBONN_evm.TU.Sc2ySwM_228.2481 Anthoceros agrestis HOM05D006101 ORTHO05D007422 7.0e-20 102.8 425 25.2
SMO351G0356 Selaginella moellendorffii HOM05D006101 ORTHO05D007422 7.7e-19 99.4 314 24.5
TPR.G36765 Trifolium pratense HOM05D006101 ORTHO05D007422 1.0e-18 99.0 89 55.1
CBR_g12009 Chara braunii HOM05D006101 ORTHO05D007422 3.4e-14 84.0 507 22.9
arahy.Tifrunner.gnm1.ann1.AAV4SA Arachis hypogaea HOM05D006101 ORTHO05D007422 3.6e-08 63.9 107 40.2
Glyma.09G075800 Glycine max HOM05D006101 ORTHO05D007422 2.0e-06 58.2 51 56.9
SEGI_15616 Sequoiadendron giganteum HOM05D006101 ORTHO05D007422 4.4e-06 57.0 62 45.2


User provided reference genes

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