Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa010289 Carpinus fangiana HOM05D006963 ORTHO05D008783 0.0e+00 2394.4 1239 100.0
Haze_23703 Corylus avellana HOM05D006963 ORTHO05D008783 0.0e+00 2268.4 1245 95.1
CiPaw.13G122900 Carya illinoinensis HOM05D006963 ORTHO05D008783 0.0e+00 1787.3 1220 77.1
QL01p015018 Quercus lobata HOM05D006963 ORTHO05D008783 0.0e+00 1744.9 1190 76.7
Prupe.6G112700 Prunus persica HOM05D006963 ORTHO05D008783 0.0e+00 1571.2 1202 69.5
Thecc.09G298600 Theobroma cacao HOM05D006963 ORTHO05D008783 0.0e+00 1544.6 1230 66.3
Manes.04G012900 Manihot esculenta HOM05D006963 ORTHO05D008783 0.0e+00 1528.8 1230 66.1
Gohir.A13G223800 Gossypium hirsutum HOM05D006963 ORTHO05D008783 0.0e+00 1514.2 1233 66.0
Gorai.013G259300 Gossypium raimondii HOM05D006963 ORTHO05D008783 0.0e+00 1506.9 1233 65.9
MD03G1129000 Malus domestica HOM05D006963 ORTHO05D008783 0.0e+00 1502.6 1236 66.7
RcHm_v2.0_Chr5g0056861 Rosa chinensis HOM05D006963 ORTHO05D008783 0.0e+00 1492.2 1232 66.2
FAN21G1782 Fragaria x ananassa HOM05D006963 ORTHO05D008783 0.0e+00 1489.6 1223 66.8
FvH4_3g30640 Fragaria vesca HOM05D006963 ORTHO05D008783 0.0e+00 1485.7 1187 67.1
Gohir.D13G228600 Gossypium hirsutum HOM05D006963 ORTHO05D008783 0.0e+00 1485.3 1233 65.2
Atru.chr3.3517 Acer truncatum HOM05D006963 ORTHO05D008783 0.0e+00 1481.5 1213 66.5
Atru.chr3.3511 Acer truncatum HOM05D006963 ORTHO05D008783 0.0e+00 1477.6 1213 66.4
Potri.009G005300 Populus trichocarpa HOM05D006963 ORTHO05D008783 0.0e+00 1474.9 1231 66.5
FAN11G1352 Fragaria x ananassa HOM05D006963 ORTHO05D008783 0.0e+00 1473.0 1276 64.3
Duzib168G1517 Durio zibethinus HOM05D006963 ORTHO05D008783 0.0e+00 1472.6 1231 63.9
FAN25G3586 Fragaria x ananassa HOM05D006963 ORTHO05D008783 0.0e+00 1468.4 1287 63.6
Ciclev10027698m.g Citrus clementina HOM05D006963 ORTHO05D008783 0.0e+00 1466.1 1218 65.6
FAN16G1993 Fragaria x ananassa HOM05D006963 ORTHO05D008783 0.0e+00 1464.9 1180 66.9
COL.COLO4_19194 Corchorus olitorius HOM05D006963 ORTHO05D008783 0.0e+00 1400.2 1148 65.0
Sabra09G0002400 Salix brachista HOM05D006963 ORTHO05D008783 0.0e+00 1399.8 1227 63.7
CANSAT64G0534 Cannabis sativa HOM05D006963 ORTHO05D008783 0.0e+00 1390.2 1242 62.6
Glyma.13G322000 Glycine max HOM05D006963 ORTHO05D008783 0.0e+00 1389.0 1193 63.0
Phvul.005G130400 Phaseolus vulgaris HOM05D006963 ORTHO05D008783 0.0e+00 1379.4 1190 63.3
Lj3g0023334 Lotus japonicus HOM05D006963 ORTHO05D008783 0.0e+00 1378.6 1181 63.1
Lalb_Chr24g0394941 Lupinus albus HOM05D006963 ORTHO05D008783 0.0e+00 1378.6 1227 62.5
CsaV3_6G014380 Cucumis sativus L. HOM05D006963 ORTHO05D008783 0.0e+00 1373.2 1249 60.1
MELO3C026954.2 Cucumis melo HOM05D006963 ORTHO05D008783 0.0e+00 1372.5 1240 61.1
Sed0000311 Sechium edule HOM05D006963 ORTHO05D008783 0.0e+00 1370.5 1229 61.8
arahy.Tifrunner.gnm1.ann1.10EEU4 Arachis hypogaea HOM05D006963 ORTHO05D008783 0.0e+00 1370.1 1231 62.2
arahy.Tifrunner.gnm1.ann1.5C5N68 Arachis hypogaea HOM05D006963 ORTHO05D008783 0.0e+00 1363.2 1231 62.0
TWI79G0599 Tripterygium wilfordii HOM05D006963 ORTHO05D008783 0.0e+00 1354.3 1223 61.6
ClCG02G021610 Citrullus lanatus HOM05D006963 ORTHO05D008783 0.0e+00 1347.0 1296 58.8
Medtr2g084285 Medicago truncatula HOM05D006963 ORTHO05D008783 0.0e+00 1344.7 1229 61.0
Rhsim01G0210700 Rhododendron simsii HOM05D006963 ORTHO05D008783 0.0e+00 1342.0 1225 62.2
Ca_01706_v3 Cicer arietinum L. HOM05D006963 ORTHO05D008783 0.0e+00 1338.6 1167 62.2
VMungo1080G0719 Vigna mungo HOM05D006963 ORTHO05D008783 0.0e+00 1336.2 1190 61.3
CSS0000606 Camellia sinensis var. sinensis HOM05D006963 ORTHO05D008783 0.0e+00 1330.1 1093 67.2
Psat5g253040 Pisum sativum HOM05D006963 ORTHO05D008783 0.0e+00 1324.7 1228 60.3
vmacro14391 Vaccinium macrocarpon HOM05D006963 ORTHO05D008783 0.0e+00 1319.3 1230 60.0
Sabra04G0147300 Salix brachista HOM05D006963 ORTHO05D008783 0.0e+00 1314.3 1230 61.6
TAR369G1146 Trochodendron aralioides HOM05D006963 ORTHO05D008783 0.0e+00 1303.9 1264 59.0
TPR.G21046 Trifolium pratense HOM05D006963 ORTHO05D008783 0.0e+00 1285.8 1248 58.6
Cc01_g10290 Coffea canephora HOM05D006963 ORTHO05D008783 0.0e+00 1250.0 1247 56.5
Aqoxy1G01103 Aquilegia oxysepala HOM05D006963 ORTHO05D008783 0.0e+00 1238.8 1258 56.4
Eucgr.J00389 Eucalyptus grandis HOM05D006963 ORTHO05D008783 0.0e+00 1238.8 1181 57.2
Solyc06g074810.3 Solanum lycopersicum HOM05D006963 ORTHO05D008783 0.0e+00 1224.9 1254 55.4
Sopen06g031250 Solanum pennellii HOM05D006963 ORTHO05D008783 0.0e+00 1223.0 1253 55.3
PGSC0003DMG400007133 Solanum tuberosum HOM05D006963 ORTHO05D008783 0.0e+00 1221.8 1268 55.0
PGR119G1224 Punica granatum HOM05D006963 ORTHO05D008783 0.0e+00 1209.1 1228 56.6
DCAR_018766 Daucus carota HOM05D006963 ORTHO05D008783 0.0e+00 1207.2 1230 56.6
MBI13_g24960_MAGBIO Magnolia biondii HOM05D006963 ORTHO05D008783 0.0e+00 1203.3 1249 55.8
Nitab4.5_0003155g0020 Nicotiana tabacum HOM05D006963 ORTHO05D008783 0.0e+00 1194.9 1297 53.7
Aa31LG5G7960 Aethionema arabicum HOM05D006963 ORTHO05D008783 0.0e+00 1191.8 1234 55.3
PSO339G1013 Papaver somniferum HOM05D006963 ORTHO05D008783 0.0e+00 1169.8 1225 54.9
Lj2A1007T38 Lonicera japonica HOM05D006963 ORTHO05D008783 0.0e+00 1169.5 1020 63.3
PSO063G0444 Papaver somniferum HOM05D006963 ORTHO05D008783 0.0e+00 1161.0 1237 54.4
MSTRG.18703 Avicennia marina HOM05D006963 ORTHO05D008783 0.0e+00 1152.9 1198 54.4
Cpa.g.sc1.5 Carica papaya HOM05D006963 ORTHO05D008783 0.0e+00 1120.9 1241 54.4
ECA248G2820 Erigeron canadensis HOM05D006963 ORTHO05D008783 0.0e+00 1120.1 1172 53.4
Sc06g0010790 Simmondsia chinensis HOM05D006963 ORTHO05D008783 0.0e+00 1117.4 1230 53.7
EL10Ac9g22623 Beta vulgaris HOM05D006963 ORTHO05D008783 0.0e+00 1115.9 1241 53.8
GSVIVG01031463001 Vitis vinifera HOM05D006963 ORTHO05D008783 0.0e+00 1113.2 1229 53.0
AL4G21950 Arabidopsis lyrata HOM05D006963 ORTHO05D008783 0.0e+00 1099.3 1225 52.2
HanXRQChr11g0346501 Helianthus annuus HOM05D006963 ORTHO05D008783 8.5e-312 1073.5 1227 52.4
Nitab4.5_0001163g0050 Nicotiana tabacum HOM05D006963 ORTHO05D008783 1.3e-310 1070.1 1300 49.1
Ah.01g003350 Amaranthus hybridus HOM05D006963 ORTHO05D008783 5.6e-306 1054.7 1197 51.5
Peaxi162Scf00114g00812 Petunia axillaris HOM05D006963 ORTHO05D008783 1.1e-304 1050.4 1246 50.0
Lsat_1_v5_gn_1_64681 Lactuca sativa HOM05D006963 ORTHO05D008783 2.4e-304 1049.3 1183 51.8
Migut.D02292 Erythranthe guttata HOM05D006963 ORTHO05D008783 7.6e-303 1044.3 1221 50.5
Hund08356 Selenicereus undatus HOM05D006963 ORTHO05D008783 1.3e-302 1043.5 1241 50.0
Dinv16225 Davidia involucrata HOM05D006963 ORTHO05D008783 1.7e-299 1033.1 836 70.0
CAN.G1432.10 Capsicum annuum HOM05D006963 ORTHO05D008783 8.7e-299 1030.8 1172 51.9
CARHR121070 Cardamine hirsuta HOM05D006963 ORTHO05D008783 6.7e-291 1004.6 1078 54.0
AUR62014974 Chenopodium quinoa HOM05D006963 ORTHO05D008783 4.3e-290 1001.9 1117 52.9
SGA_v2.0_scaffold27G11571 Striga asiatica HOM05D006963 ORTHO05D008783 1.0e-286 990.7 1226 47.4
AUR62029159 Chenopodium quinoa HOM05D006963 ORTHO05D008783 9.3e-285 984.2 1031 55.3
Glyma.12G178700 Glycine max HOM05D006963 ORTHO05D008783 1.3e-273 947.2 766 66.8
ATR0329G003 Amborella trichopoda HOM05D006963 ORTHO05D008783 4.1e-272 942.2 1294 46.5
Os02g0823800 Oryza sativa ssp. japonica HOM05D006963 ORTHO05D008783 2.3e-251 873.2 1192 44.4
TWI79G0699 Tripterygium wilfordii HOM05D006963 ORTHO05D008783 3.1e-248 862.8 810 61.6
Zm00001eb190880 Zea mays HOM05D006963 ORTHO05D008783 4.5e-247 859.0 1227 43.4
Oeu008360.1 Olea europaea HOM05D006963 ORTHO05D008783 1.4e-243 847.4 1062 46.8
HPP92_025769 Vanilla planifolia HOM05D006963 ORTHO05D008783 1.1e-216 758.1 990 45.2
SEGI_09379 Sequoiadendron giganteum HOM05D006963 ORTHO05D008783 2.8e-212 743.4 1205 41.2
Cc00_g22940 Coffea canephora HOM05D006963 ORTHO05D008783 9.9e-178 628.6 611 54.3
Mapoly0011s0199 Marchantia polymorpha HOM05D006963 ORTHO05D008783 4.6e-175 619.8 1233 36.5
unitig_899.g15359 Utricularia gibba HOM05D006963 ORTHO05D008783 7.4e-165 585.9 1184 36.1
AagrBONN_evm.TU.Sc2ySwM_344.4789 Anthoceros agrestis HOM05D006963 ORTHO05D008783 2.0e-149 534.6 1162 36.3
Pp3c19_6480 Physcomitrium patens HOM05D006963 ORTHO05D008783 3.3e-149 533.9 1279 33.9
Dinv16223 Davidia involucrata HOM05D006963 ORTHO05D008783 1.2e-130 472.2 385 63.4
CDE04G1589 Ceratophyllum demersum HOM05D006963 ORTHO05D008783 4.2e-128 463.8 624 47.0
Glyma.12G178600 Glycine max HOM05D006963 ORTHO05D008783 1.7e-116 425.2 399 57.1
Actinidia20425 Actinidia chinensis HOM05D006963 ORTHO05D008783 4.9e-92 344.0 446 49.1
SEGI_31087 Sequoiadendron giganteum HOM05D006963 ORTHO05D008783 4.0e-86 324.3 515 39.2
CBR_g8254 Chara braunii HOM05D006963 ORTHO05D008783 2.2e-68 265.4 1312 27.4
CDE04G0208 Ceratophyllum demersum HOM05D006963 ORTHO05D008783 6.7e-65 253.8 399 38.3
TAR623G1253 Trochodendron aralioides HOM05D006963 ORTHO05D008783 9.0e-54 216.9 214 56.1
arahy.Tifrunner.gnm1.ann1.WJC7CQ Arachis hypogaea HOM05D006963 ORTHO05D008783 1.4e-38 166.4 263 40.3
arahy.Tifrunner.gnm1.ann1.YZCM4H Arachis hypogaea HOM05D006963 ORTHO05D008783 4.1e-38 164.9 269 38.7
Dinv29380 Davidia involucrata HOM05D006963 ORTHO05D008783 3.6e-34 151.8 180 52.8
TAR623G0981 Trochodendron aralioides HOM05D006963 ORTHO05D008783 1.8e-30 139.4 86 73.3
Nn2g13854 Nelumbo nucifera HOM05D006963 ORTHO05D008783 9.1e-30 137.1 123 56.1
Psat0s1214g0160 Pisum sativum HOM05D006963 ORTHO05D008783 1.0e-28 133.7 93 66.7
MD11G1148100 Malus domestica HOM05D006963 ORTHO05D008783 1.3e-28 133.3 110 67.3
CSS0014134 Camellia sinensis var. sinensis HOM05D006963 ORTHO05D008783 1.1e-27 130.2 166 50.0
SEGI_19036 Sequoiadendron giganteum HOM05D006963 ORTHO05D008783 3.6e-26 125.2 97 59.8
Oeu008361.1 Olea europaea HOM05D006963 ORTHO05D008783 3.3e-24 118.6 148 49.3
CAN.G1432.11 Capsicum annuum HOM05D006963 ORTHO05D008783 5.7e-24 117.9 77 68.8
TAR623G0866 Trochodendron aralioides HOM05D006963 ORTHO05D008783 1.0e-20 107.1 82 62.2
TAR629G2211 Trochodendron aralioides HOM05D002089 ORTHO05D022294 8.3e-15 87.4 77 57.1
Cre07.g347700 Chlamydomonas reinhardtii HOM05D006963 ORTHO05D141144 8.8e-09 67.4 139 30.2
Pp3c7_26050 Physcomitrium patens HOM05D006963 ORTHO05D008783 1.3e-07 63.5 75 40.0


User provided reference genes

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