Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa010288 Carpinus fangiana HOM05D006252 ORTHO05D007909 9.4e-99 363.6 195 100.0
CiPaw.13G122300 Carya illinoinensis HOM05D006252 ORTHO05D007909 9.1e-86 320.5 196 88.8
QL01p014977 Quercus lobata HOM05D006252 ORTHO05D007909 3.2e-83 312.0 195 85.6
Manes.11G152500 Manihot esculenta HOM05D006252 ORTHO05D007909 1.2e-80 303.5 194 83.5
Cpa.g.sc47.1 Carica papaya HOM05D006252 ORTHO05D007909 1.5e-80 303.1 195 85.1
Hma1.2p1_0051F.1_g029510 Hydrangea macrophylla HOM05D006252 ORTHO05D007909 1.4e-78 296.6 198 80.3
CSS0004051 Camellia sinensis var. sinensis HOM05D006252 ORTHO05D007909 1.8e-78 296.2 198 81.8
CSS0044427 Camellia sinensis var. sinensis HOM05D006252 ORTHO05D007909 1.8e-78 296.2 198 81.8
TAR633G0073 Trochodendron aralioides HOM05D006252 ORTHO05D007909 1.8e-78 296.2 196 80.6
Atru.chr3.3505 Acer truncatum HOM05D006252 ORTHO05D007909 2.7e-77 292.4 195 81.0
Thecc.09G298300 Theobroma cacao HOM05D006252 ORTHO05D007909 3.5e-77 292.0 194 80.4
Nn6g35212 Nelumbo nucifera HOM05D006252 ORTHO05D007909 5.9e-77 291.2 197 80.7
MD03G1128600 Malus domestica HOM05D006252 ORTHO05D007909 3.8e-76 288.5 196 79.6
PGR102G1698 Punica granatum HOM05D006252 ORTHO05D007909 3.8e-76 288.5 197 78.7
Ciclev10029219m.g Citrus clementina HOM05D006252 ORTHO05D007909 5.0e-76 288.1 195 78.5
RcHm_v2.0_Chr5g0056671 Rosa chinensis HOM05D006252 ORTHO05D007909 6.5e-76 287.7 196 80.6
MD11G1148800 Malus domestica HOM05D006252 ORTHO05D007909 1.9e-75 286.2 196 79.1
CsaV3_1G013140 Cucumis sativus L. HOM05D006252 ORTHO05D007909 2.5e-75 285.8 199 76.9
Gorai.009G090100 Gossypium raimondii HOM05D006252 ORTHO05D007909 2.5e-75 285.8 195 77.9
Gohir.D05G088000 Gossypium hirsutum HOM05D006252 ORTHO05D007909 7.2e-75 284.3 195 77.4
Prupe.6G113200 Prunus persica HOM05D006252 ORTHO05D007909 9.5e-75 283.9 196 78.6
FAN16G0084 Fragaria x ananassa HOM05D006252 ORTHO05D007909 2.1e-74 282.7 196 78.6
Gohir.A05G086700 Gossypium hirsutum HOM05D006252 ORTHO05D007909 2.1e-74 282.7 195 76.9
Cc01_g10250 Coffea canephora HOM05D006252 ORTHO05D007909 2.8e-74 282.3 199 78.9
FAN21G1285 Fragaria x ananassa HOM05D006252 ORTHO05D007909 2.8e-74 282.3 196 78.6
ClCG03G002460 Citrullus lanatus HOM05D006252 ORTHO05D007909 3.6e-74 282.0 199 76.9
Cc08_g04460 Coffea canephora HOM05D006252 ORTHO05D007909 3.6e-74 282.0 199 78.4
FvH4_3g30600 Fragaria vesca HOM05D006252 ORTHO05D007909 3.6e-74 282.0 196 78.6
FAN11G0619 Fragaria x ananassa HOM05D006252 ORTHO05D007909 3.6e-74 282.0 196 78.6
COL.COLO4_19198 Corchorus olitorius HOM05D006252 ORTHO05D007909 4.7e-74 281.6 194 77.8
MELO3C004995.2 Cucumis melo HOM05D006252 ORTHO05D007909 4.7e-74 281.6 199 76.4
Sabra09G0002100 Salix brachista HOM05D006252 ORTHO05D007909 1.0e-73 280.4 195 76.9
FAN25G2218 Fragaria x ananassa HOM05D006252 ORTHO05D007909 1.4e-73 280.0 196 77.6
Sabra04G0147700 Salix brachista HOM05D006252 ORTHO05D007909 2.3e-73 279.3 192 77.6
Potri.004G217000 Populus trichocarpa HOM05D006252 ORTHO05D007909 3.0e-73 278.9 194 76.8
TWI79G1340 Tripterygium wilfordii HOM05D006252 ORTHO05D007909 7.5e-72 274.2 191 75.4
AL5G23350 Arabidopsis lyrata HOM05D006252 ORTHO05D007909 9.8e-72 273.9 196 73.5
Sed0008981 Sechium edule HOM05D006252 ORTHO05D007909 1.7e-71 273.1 199 73.9
Thhalv10002672m.g Eutrema salsugineum HOM05D006252 ORTHO05D007909 2.2e-71 272.7 196 74.0
PSO063G5667 Papaver somniferum HOM05D006252 ORTHO05D007909 3.7e-71 271.9 197 74.1
Aa31LG4G14200 Aethionema arabicum HOM05D006252 ORTHO05D007909 1.8e-70 269.6 196 71.9
PSO339G3106 Papaver somniferum HOM05D006252 ORTHO05D007909 1.8e-70 269.6 197 73.1
BcaB05g23061 Brassica carinata HOM05D006252 ORTHO05D007909 2.4e-70 269.2 197 74.1
BcaC09g49661 Brassica carinata HOM05D006252 ORTHO05D007909 2.4e-70 269.2 197 74.1
C01p34110 Brassica napus HOM05D006252 ORTHO05D007909 2.4e-70 269.2 197 74.1
BolC1t03381H Brassica oleracea HOM05D006252 ORTHO05D007909 2.4e-70 269.2 197 74.1
Aqoxy1G01090 Aquilegia oxysepala HOM05D006252 ORTHO05D007909 5.4e-70 268.1 196 73.5
Sp5g16320 Schrenkiella parvula HOM05D006252 ORTHO05D007909 5.4e-70 268.1 196 73.5
AT3G44890 Arabidopsis thaliana HOM05D006252 ORTHO05D007909 7.0e-70 267.7 196 70.9
MSTRG.18705 Avicennia marina HOM05D006252 ORTHO05D007909 7.0e-70 267.7 198 74.2
Migut.D02295 Erythranthe guttata HOM05D006252 ORTHO05D007909 7.0e-70 267.7 200 76.5
CARHR151120 Cardamine hirsuta HOM05D006252 ORTHO05D007909 9.2e-70 267.3 196 71.9
GSVIVG01031460001 Vitis vinifera HOM05D006252 ORTHO05D007909 9.2e-70 267.3 160 88.1
A01p26720 Brassica napus HOM05D006252 ORTHO05D007909 1.2e-69 266.9 197 73.6
BraA01t02602Z Brassica rapa HOM05D006252 ORTHO05D007909 1.2e-69 266.9 197 73.6
CDE08G0788 Ceratophyllum demersum HOM05D006252 ORTHO05D007909 1.6e-69 266.5 192 74.5
THA.LOC104810882 Tarenaya hassleriana HOM05D006252 ORTHO05D007909 1.6e-69 266.5 195 73.3
HanXRQChr02g0055341 Helianthus annuus HOM05D006252 ORTHO05D007909 2.0e-69 266.2 199 74.9
Peaxi162Scf00983g00015 Petunia axillaris HOM05D006252 ORTHO05D007909 2.0e-69 266.2 195 74.4
Actinidia07187 Actinidia chinensis HOM05D006252 ORTHO05D007909 5.9e-69 264.6 195 73.3
Solyc11g066410.2 Solanum lycopersicum HOM05D006252 ORTHO05D007909 5.9e-69 264.6 191 75.9
Glyma.12G081500 Glycine max HOM05D006252 ORTHO05D007909 7.8e-69 264.2 198 73.2
vmacro14388 Vaccinium macrocarpon HOM05D006252 ORTHO05D007909 1.0e-68 263.8 200 71.5
Glyma.11G192500 Glycine max HOM05D006252 ORTHO05D007909 1.7e-68 263.1 199 74.4
Sopen11g026160 Solanum pennellii HOM05D006252 ORTHO05D007909 1.7e-68 263.1 191 75.9
TWI75G0936 Tripterygium wilfordii HOM05D006252 ORTHO05D007909 1.7e-68 263.1 195 73.8
CDE02G0854 Ceratophyllum demersum HOM05D006252 ORTHO05D007909 2.9e-68 262.3 192 72.9
Lsat_1_v5_gn_6_43381 Lactuca sativa HOM05D006252 ORTHO05D007909 2.9e-68 262.3 192 74.5
AUR62014977 Chenopodium quinoa HOM05D006252 ORTHO05D007909 3.8e-68 261.9 198 72.7
PGSC0003DMG400000456 Solanum tuberosum HOM05D006252 ORTHO05D007909 5.0e-68 261.5 191 74.9
VMungo1127G0830 Vigna mungo HOM05D006252 ORTHO05D007909 5.0e-68 261.5 197 74.1
Nitab4.5_0005665g0020 Nicotiana tabacum HOM05D006252 ORTHO05D007909 1.1e-67 260.4 196 73.5
Carub.0005s1063 Capsella rubella HOM05D006252 ORTHO05D007909 1.5e-67 260.0 196 69.4
arahy.Tifrunner.gnm1.ann1.Q498P0 Arachis hypogaea HOM05D006252 ORTHO05D007909 1.9e-67 259.6 192 74.5
Lj2A1006G34 Lonicera japonica HOM05D006252 ORTHO05D007909 2.5e-67 259.2 200 72.0
Phvul.011G086500 Phaseolus vulgaris HOM05D006252 ORTHO05D007909 4.3e-67 258.5 197 72.6
AUR62029150 Chenopodium quinoa HOM05D006252 ORTHO05D007909 5.6e-67 258.1 198 71.2
arahy.Tifrunner.gnm1.ann1.4A8W5C Arachis hypogaea HOM05D006252 ORTHO05D007909 7.3e-67 257.7 192 74.5
SalBow6G6884 Salvia bowleyana HOM05D006252 ORTHO05D007909 7.3e-67 257.7 215 69.3
MBI02_g05768_MAGBIO Magnolia biondii HOM05D006252 ORTHO05D007909 9.5e-67 257.3 148 90.5
Rhsim01G0210400 Rhododendron simsii HOM05D006252 ORTHO05D007909 2.8e-66 255.8 197 71.6
EL10Ac9g22626 Beta vulgaris HOM05D006252 ORTHO05D007909 4.7e-66 255.0 197 70.6
unitig_746.g26615 Utricularia gibba HOM05D006252 ORTHO05D007909 4.7e-66 255.0 195 72.3
ATR0043G002 Amborella trichopoda HOM05D006252 ORTHO05D007909 8.0e-66 254.2 161 82.6
Ca_19323_v3 Cicer arietinum L. HOM05D006252 ORTHO05D007909 2.3e-65 252.7 197 68.0
Lj3g0021853 Lotus japonicus HOM05D006252 ORTHO05D007909 3.0e-65 252.3 191 72.8
SGA_v2.0_scaffold277G46698 Striga asiatica HOM05D006252 ORTHO05D007909 6.8e-65 251.1 199 71.4
Psat7g223760 Pisum sativum HOM05D006252 ORTHO05D007909 7.5e-64 247.7 194 67.5
HPP92_003365 Vanilla planifolia HOM05D006252 ORTHO05D007909 1.7e-63 246.5 193 69.9
Nitab4.5_0000173g0140 Nicotiana tabacum HOM05D006252 ORTHO05D007909 3.7e-63 245.4 187 72.2
ECA233G2302 Erigeron canadensis HOM05D006252 ORTHO05D007909 1.1e-62 243.8 202 68.8
Hund01525 Selenicereus undatus HOM05D006252 ORTHO05D007909 1.1e-62 243.8 191 70.7
TPR.G36832 Trifolium pratense HOM05D006252 ORTHO05D007909 2.4e-62 242.7 194 66.0
Lalb_Chr03g0027721 Lupinus albus HOM05D006252 ORTHO05D007909 3.2e-62 242.3 195 68.7
Medtr4g057210 Medicago truncatula HOM05D006252 ORTHO05D007909 3.2e-62 242.3 193 67.9
Lalb_Chr19g0136901 Lupinus albus HOM05D006252 ORTHO05D007909 9.2e-62 240.7 195 69.2
Dinv16227 Davidia involucrata HOM05D006252 ORTHO05D007909 4.3e-59 231.9 149 82.6
Zm00001eb258190 Zea mays HOM05D006252 ORTHO05D007909 2.2e-55 219.5 194 59.8
Mapoly0005s0034 Marchantia polymorpha HOM05D006252 ORTHO05D007909 2.6e-48 196.1 166 57.2
Haze_24363 Corylus avellana HOM05D006252 ORTHO05D007909 9.9e-48 194.1 105 98.1
AagrBONN_evm.TU.Sc2ySwM_362.2261 Anthoceros agrestis HOM05D006252 ORTHO05D007909 6.4e-47 191.4 176 54.0
Sc21g0000330 Simmondsia chinensis HOM05D006252 ORTHO05D007909 1.6e-42 176.8 142 70.4
CBR_g36656 Chara braunii HOM05D006252 ORTHO05D007909 5.2e-41 171.8 157 53.5
Haze_24362 Corylus avellana HOM05D006252 ORTHO05D007909 6.8e-41 171.4 91 98.9
Pp3c2_34110 Physcomitrium patens HOM05D006252 ORTHO05D007909 1.7e-39 166.8 167 52.7
Pp3c2_34120 Physcomitrium patens HOM05D006252 ORTHO05D007909 1.7e-39 166.8 167 52.7
Pp3c1_5300 Physcomitrium patens HOM05D006252 ORTHO05D007909 5.4e-38 161.8 158 52.5
Pp3c1_5320 Physcomitrium patens HOM05D006252 ORTHO05D007909 5.4e-38 161.8 158 52.5
SMO118G0111 Selaginella moellendorffii HOM05D006252 ORTHO05D007909 1.2e-37 160.6 161 49.7
Oeu007732.1 Olea europaea HOM05D006252 ORTHO05D007909 4.6e-37 158.7 94 87.2
arahy.Tifrunner.gnm1.ann1.151HRH Arachis hypogaea HOM05D006252 ORTHO05D007909 8.6e-36 154.5 103 78.6
Thhalv10023194m.g Eutrema salsugineum HOM05D006252 ORTHO05D007909 5.6e-35 151.8 102 77.5
arahy.Tifrunner.gnm1.ann1.RBN82M Arachis hypogaea HOM05D006252 ORTHO05D007909 1.2e-32 144.1 103 74.8
Actinidia24149 Actinidia chinensis HOM05D006252 ORTHO05D007909 7.1e-30 134.8 114 67.5
arahy.Tifrunner.gnm1.ann1.EI3IVH Arachis hypogaea HOM05D006252 ORTHO05D007909 7.3e-27 124.8 90 74.4
Cre12.g556050 Chlamydomonas reinhardtii HOM05D006252 ORTHO05D007909 1.4e-25 120.6 165 38.8
SEGI_37172 Sequoiadendron giganteum HOM05D006252 ORTHO05D007909 5.8e-24 115.2 85 65.9
arahy.Tifrunner.gnm1.ann1.8D185T Arachis hypogaea HOM05D006252 ORTHO05D005826 1.4e-22 110.5 71 80.3
Oeu007731.1 Olea europaea HOM05D006252 ORTHO05D007909 6.7e-20 101.7 95 66.3
MCO03G269 Micromonas commoda HOM05D006252 ORTHO05D007909 1.1e-19 100.9 167 33.5
PRCOL_00001763 Prasinoderma coloniale HOM05D006252 ORTHO05D007909 3.1e-17 92.8 182 30.8
arahy.Tifrunner.gnm1.ann1.KIT0HG Arachis hypogaea HOM05D006252 ORTHO05D007909 1.7e-15 87.0 88 56.8
SEGI_26717 Sequoiadendron giganteum HOM05D006252 ORTHO05D007909 4.9e-15 85.5 85 52.9
Ca_29226_v3 Cicer arietinum L. HOM05D006252 ORTHO05D008725 2.1e-13 80.1 159 34.6
MELO3C029084.2 Cucumis melo HOM05D006252 ORTHO05D007909 3.0e-12 76.3 120 44.2
arahy.Tifrunner.gnm1.ann1.TR51Z4 Arachis hypogaea HOM05D006252 ORTHO05D007909 4.0e-09 65.9 44 68.2
Zm00001eb258210 Zea mays HOM05D000274 ORTHO05D006772 5.8e-08 62.0 90 40.0
arahy.Tifrunner.gnm1.ann1.LGS4T1 Arachis hypogaea HOM05D006252 ORTHO05D007909 1.1e-06 57.8 48 64.6
SMO334G0054 Selaginella moellendorffii HOM05D005275 ORTHO05D006435 4.2e-06 55.8 157 30.6


User provided reference genes

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