Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa010280 Carpinus fangiana HOM05D006958 ORTHO05D008814 4.1e-130 468.0 225 100.0
Cfa005665 Carpinus fangiana HOM05D020682 ORTHO05D020353 3.8e-43 179.1 99 88.9
Cfa013775 Carpinus fangiana HOM05D006958 ORTHO05D008814 1.3e-38 164.1 93 88.2
Haze_22433 Corylus avellana HOM05D006958 ORTHO05D008814 5.3e-37 158.7 93 84.9
CiPaw.07G174600 Carya illinoinensis HOM05D006958 ORTHO05D008814 1.0e-35 154.5 93 80.6
QL12p038133 Quercus lobata HOM05D006958 ORTHO05D008814 3.2e-34 149.4 93 77.4
Manes.18G046700 Manihot esculenta HOM05D006958 ORTHO05D008814 7.4e-31 138.3 93 71.0
Cpa.g.sc142.28 Carica papaya HOM05D006958 ORTHO05D008814 1.3e-30 137.5 114 58.8
CANSAT25G3409 Cannabis sativa HOM05D006958 ORTHO05D008814 2.8e-30 136.3 93 69.9
Ciclev10001733m.g Citrus clementina HOM05D006958 ORTHO05D008814 3.7e-30 136.0 93 74.2
RcHm_v2.0_Chr6g0309651 Rosa chinensis HOM05D006958 ORTHO05D008814 4.8e-30 135.6 93 71.0
TAR376G0445 Trochodendron aralioides HOM05D006958 ORTHO05D008814 2.4e-29 133.3 93 66.7
Prupe.1G422600 Prunus persica HOM05D006958 ORTHO05D008814 4.1e-29 132.5 93 69.9
Thecc.08G088500 Theobroma cacao HOM05D006958 ORTHO05D008814 5.3e-29 132.1 93 69.9
ClCG08G016520 Citrullus lanatus HOM05D006958 ORTHO05D008814 6.9e-29 131.7 91 70.3
FAN15G0662 Fragaria x ananassa HOM05D006958 ORTHO05D008814 1.5e-28 130.6 88 70.5
FAN27G0228 Fragaria x ananassa HOM05D006958 ORTHO05D008814 1.5e-28 130.6 88 70.5
Gorai.009G220300 Gossypium raimondii HOM05D006958 ORTHO05D008814 1.5e-28 130.6 93 71.0
Duzib093G1923 Durio zibethinus HOM05D006958 ORTHO05D008814 2.6e-28 129.8 93 69.9
Rhsim06G0062400 Rhododendron simsii HOM05D006958 ORTHO05D008814 2.6e-28 129.8 93 67.7
Atru.chr13.835 Acer truncatum HOM05D006958 ORTHO05D008814 3.4e-28 129.4 93 69.9
Cc10_g05800 Coffea canephora HOM05D006958 ORTHO05D008814 4.5e-28 129.0 91 69.2
Sed0002112 Sechium edule HOM05D006958 ORTHO05D008814 4.5e-28 129.0 91 68.1
SGA_v2.0_scaffold28G11833 Striga asiatica HOM05D006958 ORTHO05D008814 4.5e-28 129.0 115 59.1
THA.LOC104816754 Tarenaya hassleriana HOM05D006958 ORTHO05D008814 5.9e-28 128.6 93 66.7
Aa31LG2G10550 Aethionema arabicum HOM05D006958 ORTHO05D008814 1.0e-27 127.9 93 66.7
COL.COLO4_28503 Corchorus olitorius HOM05D006958 ORTHO05D008814 1.0e-27 127.9 88 71.6
Gohir.A05G210300 Gossypium hirsutum HOM05D006958 ORTHO05D008814 1.0e-27 127.9 93 69.9
Gohir.D05G213600 Gossypium hirsutum HOM05D006958 ORTHO05D008814 1.0e-27 127.9 93 69.9
MD15G1069100 Malus domestica HOM05D006958 ORTHO05D008814 1.3e-27 127.5 94 72.3
CsaV3_2G026090 Cucumis sativus L. HOM05D006958 ORTHO05D008814 1.7e-27 127.1 91 68.1
Dinv39219 Davidia involucrata HOM05D006958 ORTHO05D008814 1.7e-27 127.1 93 66.7
GSVIVG01009341001 Vitis vinifera HOM05D006958 ORTHO05D008814 1.7e-27 127.1 95 66.3
Potri.002G118300 Populus trichocarpa HOM05D006958 ORTHO05D008814 3.8e-27 125.9 93 64.5
Actinidia22696 Actinidia chinensis HOM05D006958 ORTHO05D008814 5.0e-27 125.6 114 56.1
TWI12G1073 Tripterygium wilfordii HOM05D006958 ORTHO05D008814 5.0e-27 125.6 88 67.0
MELO3C010802.2 Cucumis melo HOM05D006958 ORTHO05D008814 6.5e-27 125.2 91 65.9
Actinidia10201 Actinidia chinensis HOM05D006958 ORTHO05D008814 8.5e-27 124.8 114 56.1
FvH4_2g33060 Fragaria vesca HOM05D006958 ORTHO05D008814 1.9e-26 123.6 93 66.7
Lalb_Chr14g0368181 Lupinus albus HOM05D006958 ORTHO05D008814 1.9e-26 123.6 93 65.6
MSTRG.24376 Avicennia marina HOM05D006958 ORTHO05D008814 3.2e-26 122.9 91 68.1
Eucgr.F02250 Eucalyptus grandis HOM05D006958 ORTHO05D008814 3.2e-26 122.9 88 67.0
FAN24G2490 Fragaria x ananassa HOM05D006958 ORTHO05D008814 3.2e-26 122.9 88 68.2
Migut.N02783 Erythranthe guttata HOM05D006958 ORTHO05D008814 9.4e-26 121.3 91 63.7
Carub.0002s0585 Capsella rubella HOM05D006958 ORTHO05D008814 1.2e-25 120.9 93 66.7
AT1G59600 Arabidopsis thaliana HOM05D006958 ORTHO05D008814 1.6e-25 120.6 93 65.6
arahy.Tifrunner.gnm1.ann1.JFD9T8 Arachis hypogaea HOM05D006958 ORTHO05D008814 1.6e-25 120.6 93 64.5
FAN20G1263 Fragaria x ananassa HOM05D006958 ORTHO05D008814 1.6e-25 120.6 88 67.0
AL2G17470 Arabidopsis lyrata HOM05D006958 ORTHO05D008814 2.1e-25 120.2 93 64.5
arahy.Tifrunner.gnm1.ann1.8TQ0W2 Arachis hypogaea HOM05D006958 ORTHO05D008814 4.6e-25 119.0 88 65.9
PGR031G1511 Punica granatum HOM05D006958 ORTHO05D008814 4.6e-25 119.0 94 62.8
Solyc04g077820.4 Solanum lycopersicum HOM05D006958 ORTHO05D008814 6.1e-25 118.6 93 61.3
CARHR283790 Cardamine hirsuta HOM05D006958 ORTHO05D008814 1.4e-24 117.5 93 63.4
CSS0020437 Camellia sinensis var. sinensis HOM05D006958 ORTHO05D008814 1.8e-24 117.1 114 54.4
Nitab4.5_0002484g0050 Nicotiana tabacum HOM05D006958 ORTHO05D008814 2.3e-24 116.7 93 61.3
Nitab4.5_0004654g0020 Nicotiana tabacum HOM05D006958 ORTHO05D008814 2.3e-24 116.7 93 61.3
Thhalv10023590m.g Eutrema salsugineum HOM05D006958 ORTHO05D008814 3.0e-24 116.3 93 63.4
Sopen04g031420 Solanum pennellii HOM05D006958 ORTHO05D008814 3.9e-24 115.9 93 60.2
Aqoxy6G02602 Aquilegia oxysepala HOM05D006958 ORTHO05D008814 5.1e-24 115.5 83 65.1
BcaB04g20216 Brassica carinata HOM05D006958 ORTHO05D008814 6.7e-24 115.2 91 61.5
Sc02g0007890 Simmondsia chinensis HOM05D006958 ORTHO05D008814 6.7e-24 115.2 95 60.0
Cfa019900 Carpinus fangiana HOM05D020682 ORTHO05D020353 1.1e-23 114.4 65 87.7
Lsat_1_v5_gn_6_110920 Lactuca sativa HOM05D006958 ORTHO05D008814 1.1e-23 114.4 95 62.1
PGSC0003DMG400010608 Solanum tuberosum HOM05D006958 ORTHO05D008814 1.1e-23 114.4 93 59.1
DCAR_020049 Daucus carota HOM05D006958 ORTHO05D008814 1.5e-23 114.0 91 56.0
ECA246G2880 Erigeron canadensis HOM05D006958 ORTHO05D008814 2.5e-23 113.2 117 54.7
EL10Ac1g02379 Beta vulgaris HOM05D006958 ORTHO05D008814 3.3e-23 112.8 93 59.1
MBI16_g23890_MAGBIO Magnolia biondii HOM05D006958 ORTHO05D008814 4.3e-23 112.5 94 60.6
Lj5g0000926 Lotus japonicus HOM05D006958 ORTHO05D008814 5.7e-23 112.1 93 61.3
BraA01t03033Z Brassica rapa HOM05D006958 ORTHO05D008814 7.4e-23 111.7 88 62.5
CAN.G724.27 Capsicum annuum HOM05D006958 ORTHO05D008814 9.7e-23 111.3 93 59.1
A01p28700 Brassica napus HOM05D006958 ORTHO05D008814 1.7e-22 110.5 88 61.4
Medtr1g018000 Medicago truncatula HOM05D006958 ORTHO05D008814 1.7e-22 110.5 93 60.2
TPR.G37796 Trifolium pratense HOM05D006958 ORTHO05D008814 1.7e-22 110.5 93 59.1
Sp2g04980 Schrenkiella parvula HOM05D006958 ORTHO05D008814 2.2e-22 110.2 88 61.4
ATR0739G011 Amborella trichopoda HOM05D006958 ORTHO05D008814 4.8e-22 109.0 115 52.2
PSO675G0096 Papaver somniferum HOM05D006958 ORTHO05D008814 6.3e-22 108.6 114 50.0
C01p36350 Brassica napus HOM05D006958 ORTHO05D008814 8.2e-22 108.2 88 60.2
Ca_13215_v3 Cicer arietinum L. HOM05D006958 ORTHO05D008814 1.4e-21 107.5 93 59.1
HanXRQChr08g0229631 Helianthus annuus HOM05D006958 ORTHO05D008814 1.4e-21 107.5 98 58.2
CSS0026693 Camellia sinensis var. sinensis HOM05D006958 ORTHO05D008814 9.1e-21 104.8 93 59.1
PSO541G2153 Papaver somniferum HOM05D006958 ORTHO05D008814 9.1e-21 104.8 114 49.1
unitig_744.g24127 Utricularia gibba HOM05D006958 ORTHO05D008814 1.5e-20 104.0 91 54.9
BolC1t03593H Brassica oleracea HOM05D006958 ORTHO05D008814 2.0e-20 103.6 89 59.6
PSO541G3524 Papaver somniferum HOM05D006958 ORTHO05D008814 1.0e-19 101.3 92 54.3
VMungo0647G0836 Vigna mungo HOM05D006958 ORTHO05D008814 2.2e-19 100.1 93 59.1
Hund05299 Selenicereus undatus HOM05D006958 ORTHO05D008814 2.9e-19 99.8 91 54.9
Glyma.14G089018 Glycine max HOM05D006958 ORTHO05D008814 5.0e-19 99.0 93 54.8
Zm00001eb325900 Zea mays HOM05D006958 ORTHO05D008814 1.1e-18 97.8 94 53.2
CDE04G0359 Ceratophyllum demersum HOM05D006958 ORTHO05D008814 1.4e-18 97.4 113 48.7
Cfa007134 Carpinus fangiana HOM05D020682 ORTHO05D020353 1.9e-18 97.1 54 87.0
HPP92_009523 Vanilla planifolia HOM05D006958 ORTHO05D008814 3.2e-18 96.3 95 51.6
Phvul.001G028000 Phaseolus vulgaris HOM05D006958 ORTHO05D008814 1.2e-17 94.4 93 53.8
Cfa017753 Carpinus fangiana HOM05D020682 ORTHO05D020353 4.7e-17 92.4 55 85.5
Os01g0593100 Oryza sativa ssp. japonica HOM05D006958 ORTHO05D008814 6.7e-16 88.6 82 54.9
Lj4A758G77 Lonicera japonica HOM05D006958 ORTHO05D008814 7.0e-13 78.6 50 70.0
Pp3c12_1620 Physcomitrium patens HOM05D006958 ORTHO05D008814 7.0e-13 78.6 93 45.2
HPP92_009559 Vanilla planifolia HOM05D006958 ORTHO05D008814 2.0e-12 77.0 67 55.2
Peaxi162Scf00081g02114 Petunia axillaris HOM05D006958 ORTHO05D008814 2.6e-12 76.6 91 47.3
CBR_g51257 Chara braunii HOM05D006958 ORTHO05D008814 1.3e-11 74.3 91 44.0
TWI53G0470 Tripterygium wilfordii HOM05D001309 ORTHO05D000385 3.8e-11 72.8 120 35.8
TWI15G0427 Tripterygium wilfordii HOM05D001309 ORTHO05D000385 6.5e-11 72.0 99 39.4
SMO334G0101 Selaginella moellendorffii HOM05D006958 ORTHO05D008814 1.5e-10 70.9 91 39.6
CSS0031187 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 9.4e-10 68.2 96 38.5
Rhsim03G0023700 Rhododendron simsii HOM05D001309 ORTHO05D020353 2.1e-09 67.0 96 38.5
CiPaw.09G181600 Carya illinoinensis HOM05D001309 ORTHO05D000385 2.7e-09 66.6 99 35.4
CiPaw.10G087600 Carya illinoinensis HOM05D001309 ORTHO05D000385 3.6e-09 66.2 131 29.8
CiPaw.16G105200 Carya illinoinensis HOM05D001309 ORTHO05D000385 3.6e-09 66.2 131 29.8
CiPaw.16G058400 Carya illinoinensis HOM05D001309 ORTHO05D000385 2.3e-08 63.5 131 29.0
Haze_01557 Corylus avellana HOM05D020682 ORTHO05D020353 8.8e-08 61.6 32 87.5
TAR365G0123 Trochodendron aralioides HOM05D001309 ORTHO05D000385 1.7e-06 57.4 134 30.6
TAR369G0367 Trochodendron aralioides HOM05D001309 ORTHO05D000385 1.7e-06 57.4 134 30.6
TAR622G0651 Trochodendron aralioides HOM05D000141 ORTHO05D000385 1.7e-06 57.4 134 30.6
Psat0s3396g0160 Pisum sativum HOM05D006958 ORTHO05D008814 2.2e-06 57.0 40 65.0
TAR365G0205 Trochodendron aralioides HOM05D000141 ORTHO05D000385 2.2e-06 57.0 120 30.8
BolC4t24190H Brassica oleracea HOM05D006958 ORTHO05D008814 2.8e-06 56.6 67 49.3
TWI75G0500 Tripterygium wilfordii HOM05D001309 ORTHO05D000385 2.8e-06 56.6 97 34.0
MBI19_g00865_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 3.7e-06 56.2 85 38.8
TAR375G0312 Trochodendron aralioides HOM05D001309 ORTHO05D000385 3.7e-06 56.2 134 29.9


User provided reference genes

Program Settings