Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa010279 Carpinus fangiana HOM05D004791 ORTHO05D005637 2.9e-140 501.9 255 100.0
CiPaw.13G121900 Carya illinoinensis HOM05D004791 ORTHO05D005637 3.6e-98 362.1 334 63.2
GSVIVG01037421001 Vitis vinifera HOM05D004791 ORTHO05D005637 8.0e-98 360.9 257 72.4
Eucgr.B03774 Eucalyptus grandis HOM05D004791 ORTHO05D005637 4.8e-95 351.7 257 69.3
Manes.05G196500 Manihot esculenta HOM05D004791 ORTHO05D005637 8.2e-95 350.9 261 70.1
MD02G1268200 Malus domestica HOM05D004791 ORTHO05D005637 2.0e-93 346.3 253 70.0
Potri.001G222300 Populus trichocarpa HOM05D004791 ORTHO05D005637 3.5e-93 345.5 258 71.3
Lalb_Chr04g0249541 Lupinus albus HOM05D004791 ORTHO05D005637 4.5e-93 345.1 256 72.3
TAR633G0334 Trochodendron aralioides HOM05D004791 ORTHO05D005637 5.9e-93 344.7 290 64.8
Lsat_1_v5_gn_5_176000 Lactuca sativa HOM05D004791 ORTHO05D005637 7.7e-93 344.4 257 66.5
FvH4_3g27591 Fragaria vesca HOM05D004791 ORTHO05D005637 1.0e-92 344.0 251 70.9
Lalb_Chr04g0249551 Lupinus albus HOM05D004791 ORTHO05D005637 1.3e-92 343.6 256 72.3
Glyma.14G040400 Glycine max HOM05D004791 ORTHO05D005637 5.0e-92 341.7 256 70.3
Ca_06167_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 8.5e-92 340.9 250 70.8
Ca_06184_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 8.5e-92 340.9 250 70.8
ClCG02G024120 Citrullus lanatus HOM05D004791 ORTHO05D005637 1.1e-91 340.5 252 70.6
MD07G1051600 Malus domestica HOM05D004791 ORTHO05D005637 1.1e-91 340.5 250 70.8
FAN16G2039 Fragaria x ananassa HOM05D004791 ORTHO05D005637 1.5e-91 340.1 250 71.2
HanXRQChr01g0013701 Helianthus annuus HOM05D004791 ORTHO05D005637 1.5e-91 340.1 255 68.6
LjContig00564g0026958 Lotus japonicus HOM05D004791 ORTHO05D005637 1.5e-91 340.1 255 70.6
RcHm_v2.0_Chr5g0050091 Rosa chinensis HOM05D004791 ORTHO05D005637 1.2e-90 337.0 253 70.0
Glyma.02G275700 Glycine max HOM05D004791 ORTHO05D005637 1.6e-90 336.7 258 70.2
PGR102G1910 Punica granatum HOM05D004791 ORTHO05D005637 2.7e-90 335.9 260 69.2
CSS0048448 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 4.7e-90 335.1 257 68.5
Nitab4.5_0000539g0030 Nicotiana tabacum HOM05D004791 ORTHO05D005637 6.1e-90 334.7 252 69.0
VMungo0647G0403 Vigna mungo HOM05D004791 ORTHO05D005637 1.4e-89 333.6 257 68.9
CsaV3_4G023210 Cucumis sativus L. HOM05D004791 ORTHO05D005637 1.8e-89 333.2 252 69.4
SalBow6G3468 Salvia bowleyana HOM05D004791 ORTHO05D005637 6.8e-89 331.3 259 68.0
arahy.Tifrunner.gnm1.ann1.7GTL8A Arachis hypogaea HOM05D004791 ORTHO05D005637 8.8e-89 330.9 279 64.9
Aqoxy2G04139 Aquilegia oxysepala HOM05D004791 ORTHO05D005637 1.5e-88 330.1 257 67.7
Medtr5g088337 Medicago truncatula HOM05D004791 ORTHO05D005637 2.6e-88 329.3 254 65.7
Sed0001715 Sechium edule HOM05D004791 ORTHO05D005637 3.4e-88 328.9 249 68.3
arahy.Tifrunner.gnm1.ann1.FGXA9Q Arachis hypogaea HOM05D004791 ORTHO05D005637 4.4e-88 328.6 276 63.8
Thecc.09G339600 Theobroma cacao HOM05D004791 ORTHO05D005637 7.5e-88 327.8 257 67.3
CSS0048046 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 9.7e-88 327.4 257 67.3
Gohir.A13G230300 Gossypium hirsutum HOM05D004791 ORTHO05D005637 9.7e-88 327.4 256 64.8
Gorai.004G001600 Gossypium raimondii HOM05D004791 ORTHO05D005637 9.7e-88 327.4 255 68.2
MELO3C014695.2 Cucumis melo HOM05D004791 ORTHO05D005637 1.3e-87 327.0 249 69.5
CSS0026131 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 2.8e-87 325.9 258 65.9
Gohir.D08G008400 Gossypium hirsutum HOM05D004791 ORTHO05D005637 2.8e-87 325.9 255 67.8
Gorai.013G266500 Gossypium raimondii HOM05D004791 ORTHO05D005637 2.8e-87 325.9 257 65.8
vmacro02852 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 2.8e-87 325.9 273 62.6
Hma1.2p1_1631F.1_g294630 Hydrangea macrophylla HOM05D004791 ORTHO05D005637 4.8e-87 325.1 258 66.7
CSS0033533 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 6.3e-87 324.7 258 65.5
Gohir.A08G000072 Gossypium hirsutum HOM05D004791 ORTHO05D005637 1.4e-86 323.6 255 67.8
Peaxi162Scf00390g00128 Petunia axillaris HOM05D004791 ORTHO05D005637 1.4e-86 323.6 256 66.0
Hund25111 Selenicereus undatus HOM05D004791 ORTHO05D005637 3.1e-86 322.4 253 68.4
Gohir.D13G235800 Gossypium hirsutum HOM05D004791 ORTHO05D005637 5.3e-86 321.6 255 64.7
Nitab4.5_0004383g0040 Nicotiana tabacum HOM05D004791 ORTHO05D005637 7.0e-86 321.2 239 68.2
PSO732G0764 Papaver somniferum HOM05D004791 ORTHO05D005637 9.1e-86 320.9 253 65.2
SGA_v2.0_scaffold8G04482 Striga asiatica HOM05D004791 ORTHO05D005637 1.2e-85 320.5 256 64.1
ECA248G0040 Erigeron canadensis HOM05D004791 ORTHO05D005637 2.0e-85 319.7 255 65.5
TWI79G1652 Tripterygium wilfordii HOM05D004791 ORTHO05D005637 2.0e-85 319.7 277 62.8
Atru.chr3.2946 Acer truncatum HOM05D004791 ORTHO05D005637 2.7e-85 319.3 255 65.9
Nitab4.5_0008751g0050 Nicotiana tabacum HOM05D004791 ORTHO05D005637 2.7e-85 319.3 257 64.6
Migut.D00780 Erythranthe guttata HOM05D004791 ORTHO05D005637 3.5e-85 318.9 257 63.0
Ciclev10016367m.g Citrus clementina HOM05D004791 ORTHO05D005637 4.5e-85 318.5 252 65.1
Dinv28770 Davidia involucrata HOM05D004791 ORTHO05D005637 1.0e-84 317.4 216 74.1
PSO675G0111 Papaver somniferum HOM05D004791 ORTHO05D005637 2.9e-84 315.8 258 64.3
THA.LOC104800478 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 3.8e-84 315.5 260 65.0
AUR62007743 Chenopodium quinoa HOM05D004791 ORTHO05D005637 5.0e-84 315.1 255 65.5
CAN.G874.52 Capsicum annuum HOM05D004791 ORTHO05D005637 6.5e-84 314.7 255 64.3
AUR62002934 Chenopodium quinoa HOM05D004791 ORTHO05D005637 6.5e-84 314.7 254 65.7
Sc15g0007330 Simmondsia chinensis HOM05D004791 ORTHO05D005637 2.5e-83 312.8 254 64.6
THA.LOC104816959 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 2.5e-83 312.8 258 64.3
PGSC0003DMG400027664 Solanum tuberosum HOM05D004791 ORTHO05D005637 7.2e-83 311.2 255 63.9
SGA_v2.0_scaffold158G37484 Striga asiatica HOM05D004791 ORTHO05D005637 7.2e-83 311.2 257 63.4
Sopen06g034170 Solanum pennellii HOM05D004791 ORTHO05D005637 1.2e-82 310.5 255 63.9
Solyc06g082810.3 Solanum lycopersicum HOM05D004791 ORTHO05D005637 2.7e-82 309.3 255 63.5
Nitab4.5_0001348g0240 Nicotiana tabacum HOM05D004791 ORTHO05D005637 3.6e-82 308.9 257 63.0
unitig_0.g222 Utricularia gibba HOM05D006455 ORTHO05D008098 6.1e-82 308.1 253 62.5
Sp4g08380 Schrenkiella parvula HOM05D004791 ORTHO05D005637 8.0e-82 307.8 255 61.2
Sopen09g012370 Solanum pennellii HOM05D004791 ORTHO05D005637 3.0e-81 305.8 270 60.7
Aa31LG5G8380 Aethionema arabicum HOM05D004791 ORTHO05D005637 4.0e-81 305.4 254 62.2
DCAR_018598 Daucus carota HOM05D004791 ORTHO05D005637 8.8e-81 304.3 256 63.3
Lsat_1_v5_gn_9_15660 Lactuca sativa HOM05D004791 ORTHO05D005637 8.8e-81 304.3 255 63.9
Thhalv10002092m.g Eutrema salsugineum HOM05D004791 ORTHO05D005637 1.2e-80 303.9 255 62.7
vmacro14664 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 3.4e-80 302.4 275 61.1
Carub.0004s0745 Capsella rubella HOM05D004791 ORTHO05D005637 9.8e-80 300.8 255 60.4
Migut.N00694 Erythranthe guttata HOM05D004791 ORTHO05D005637 1.3e-79 300.4 255 61.2
AL4G20260 Arabidopsis lyrata HOM05D004791 ORTHO05D005637 8.3e-79 297.7 251 61.4
CDE08G0165 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 8.3e-79 297.7 255 62.0
BcaB01g01998 Brassica carinata HOM05D004791 ORTHO05D005637 2.4e-78 296.2 252 61.5
BraA09t35872Z Brassica rapa HOM05D004791 ORTHO05D005637 5.4e-78 295.0 252 61.1
BcaC04g24019 Brassica carinata HOM05D004791 ORTHO05D005637 1.6e-77 293.5 252 61.1
A09p02230 Brassica napus HOM05D004791 ORTHO05D005637 1.6e-77 293.5 252 60.7
C09p02320 Brassica napus HOM05D004791 ORTHO05D005637 1.6e-77 293.5 250 61.2
CARHR119150 Cardamine hirsuta HOM05D004791 ORTHO05D005637 1.6e-77 293.5 254 59.8
Cc01_g15680 Coffea canephora HOM05D004791 ORTHO05D005637 2.0e-77 293.1 174 79.9
CDE09G0384 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 7.7e-77 291.2 255 61.2
Nitab4.5_0000105g0450 Nicotiana tabacum HOM05D004791 ORTHO05D005637 1.7e-76 290.0 275 57.8
EL10Ac6g14521 Beta vulgaris HOM05D004791 ORTHO05D005637 3.8e-76 288.9 251 61.0
BolC9t53160H Brassica oleracea HOM05D004791 ORTHO05D005637 5.0e-76 288.5 254 60.6
AT2G26970 Arabidopsis thaliana HOM05D004791 ORTHO05D005637 4.2e-75 285.4 251 59.0
Prupe.2G053500 Prunus persica HOM05D004791 ORTHO05D005637 4.2e-75 285.4 215 71.6
Prupe.2G051000 Prunus persica HOM05D004791 ORTHO05D005637 9.5e-75 284.3 169 82.2
Zm00001eb240820 Zea mays HOM05D004791 ORTHO05D005637 2.2e-71 273.1 262 56.5
Phvul.008G205900 Phaseolus vulgaris HOM05D004791 ORTHO05D005637 1.8e-70 270.0 215 66.0
Lj2A1108T30 Lonicera japonica HOM05D004791 ORTHO05D005637 3.2e-70 269.2 348 47.7
Os02g0465500 Oryza sativa ssp. japonica HOM05D004791 ORTHO05D005637 1.6e-69 266.9 257 55.6
SEGI_38815 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 4.5e-69 265.4 252 54.8
ATR0661G342 Amborella trichopoda HOM05D004791 ORTHO05D005637 1.3e-68 263.8 229 58.5
Haze_23696 Corylus avellana HOM05D004791 ORTHO05D005637 1.3e-68 263.8 188 76.6
COL.COLO4_18343 Corchorus olitorius HOM05D004791 ORTHO05D005637 5.0e-68 261.9 253 56.5
HanXRQChr08g0230971 Helianthus annuus HOM05D004791 ORTHO05D005637 7.3e-67 258.1 188 70.2
ECA247G3547 Erigeron canadensis HOM05D004791 ORTHO05D005637 9.5e-67 257.7 215 63.7
HanXRQChr08g0230941 Helianthus annuus HOM05D004791 ORTHO05D005637 3.6e-66 255.8 200 65.5
Peaxi162Scf00293g00320 Petunia axillaris HOM05D004791 ORTHO05D005637 1.8e-65 253.4 148 83.1
SEGI_08759 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 1.3e-63 247.3 180 66.7
Duzib168G2260 Durio zibethinus HOM05D004791 ORTHO05D005637 1.7e-63 246.9 171 73.1
Mapoly0089s0044 Marchantia polymorpha HOM05D004791 ORTHO05D005637 2.2e-63 246.5 248 53.6
Rhsim11G0123600 Rhododendron simsii HOM05D004791 ORTHO05D005637 6.6e-60 235.0 263 53.2
Pp3c15_14440 Physcomitrium patens HOM05D004791 ORTHO05D005637 1.5e-59 233.8 251 48.6
SMO361G0388 Selaginella moellendorffii HOM05D004791 ORTHO05D005637 1.5e-59 233.8 177 65.5
MBI06_g07515_MAGBIO Magnolia biondii HOM05D004791 ORTHO05D005637 3.3e-59 232.6 184 64.1
HPP92_004836 Vanilla planifolia HOM05D004791 ORTHO05D005637 5.6e-59 231.9 173 66.5
CANSAT54G2396 Cannabis sativa HOM05D004791 ORTHO05D005637 6.2e-58 228.4 190 64.2
QL01p007413 Quercus lobata HOM05D004791 ORTHO05D005637 6.2e-58 228.4 217 60.8
Psat2g021120 Pisum sativum HOM05D004791 ORTHO05D005637 8.9e-57 224.6 184 65.2
Pp3c9_12520 Physcomitrium patens HOM05D004791 ORTHO05D005637 6.4e-55 218.4 179 57.0
HPP92_004833 Vanilla planifolia HOM05D004791 ORTHO05D005637 2.4e-54 216.5 164 65.2
Rhsim13G0056300 Rhododendron simsii HOM05D004791 ORTHO05D005637 3.5e-53 212.6 190 61.6
Duzib170G0202 Durio zibethinus HOM05D004791 ORTHO05D005637 6.0e-53 211.8 185 62.7
Cre10.g425800 Chlamydomonas reinhardtii HOM05D004791 ORTHO05D005637 4.1e-46 189.1 250 40.8
Lalb_Chr04g0249561 Lupinus albus HOM05D004791 ORTHO05D005637 1.0e-44 184.5 120 80.8
TPR.G27619 Trifolium pratense HOM05D004791 ORTHO05D005637 1.7e-44 183.7 157 61.8
PRCOL_00004118 Prasinoderma coloniale HOM05D004791 ORTHO05D005637 3.9e-44 182.6 182 50.5
Dinv00703 Davidia involucrata HOM05D004791 ORTHO05D005637 7.3e-43 178.3 205 52.7
Dinv18272 Davidia involucrata HOM05D004791 ORTHO05D005637 9.6e-43 177.9 155 61.9
Nn7g38012 Nelumbo nucifera HOM05D004791 ORTHO05D005637 5.8e-40 168.7 164 54.9
Solyc09g018780.4 Solanum lycopersicum HOM05D004791 ORTHO05D005637 5.8e-40 168.7 103 81.6
FAN11G2354 Fragaria x ananassa HOM05D004791 ORTHO05D005637 1.4e-38 164.1 181 52.5
TPR.G11322 Trifolium pratense HOM05D004791 ORTHO05D005637 1.7e-36 157.1 96 77.1
BolC9t53165H Brassica oleracea HOM05D004791 ORTHO05D005637 4.8e-34 149.1 129 58.1
Solyc09g018760.2 Solanum lycopersicum HOM05D004791 ORTHO05D005637 6.2e-34 148.7 154 51.3
MSTRG.18521 Avicennia marina HOM05D004791 ORTHO05D005637 1.4e-33 147.5 133 58.6
Cfa021416 Carpinus fangiana HOM05D004791 ORTHO05D005637 3.8e-31 139.4 193 42.5
C09p02340 Brassica napus HOM05D004791 ORTHO05D005637 4.9e-31 139.0 121 59.5
BcaC04g24021 Brassica carinata HOM05D004791 ORTHO05D005637 3.2e-30 136.3 120 57.5
C03p32150 Brassica napus HOM05D004791 ORTHO05D005637 4.8e-26 122.5 136 49.3
BolC3t15557H Brassica oleracea HOM05D004791 ORTHO05D005637 4.8e-26 122.5 136 49.3
MBI06_g07516_MAGBIO Magnolia biondii HOM05D004791 ORTHO05D005637 1.8e-25 120.6 83 73.5
HanXRQChr08g0230891 Helianthus annuus HOM05D004791 ORTHO05D005637 2.9e-23 113.2 220 34.1
HanXRQChr08g0230961 Helianthus annuus HOM05D004791 ORTHO05D005637 2.7e-21 106.7 72 66.7
AL1G12420 Arabidopsis lyrata HOM05D004791 ORTHO05D005637 2.5e-19 100.1 65 70.8
HanXRQChr08g0230951 Helianthus annuus HOM05D004791 ORTHO05D005637 4.3e-19 99.4 70 68.6
DCAR_012715 Daucus carota HOM05D004791 ORTHO05D005637 1.2e-16 91.3 62 69.4
Peaxi162Scf01280g00024 Petunia axillaris HOM05D004791 ORTHO05D005637 8.4e-15 85.1 122 46.7
Gohir.D04G099150 Gossypium hirsutum HOM05D004791 ORTHO05D005637 1.2e-13 81.3 100 49.0
Os04g0303950 Oryza sativa ssp. japonica HOM05D004791 ORTHO05D005637 6.0e-13 79.0 107 45.8
DCAR_012716 Daucus carota HOM05D004791 ORTHO05D005637 5.1e-12 75.9 52 69.2
Gorai.013G056800 Gossypium raimondii HOM05D004791 ORTHO05D005637 8.7e-12 75.1 100 46.0
Nitab4.5_0005144g0040 Nicotiana tabacum HOM05D004019 ORTHO05D005136 1.7e-07 60.8 38 76.3
Cpa.g.sc34.213 Carica papaya HOM05D004791 ORTHO05D005637 3.2e-06 56.6 34 76.5


User provided reference genes

Program Settings