Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa010227 Carpinus fangiana HOM05D001765 ORTHO05D003527 1.0e-47 193.0 93 100.0
Haze_03845 Corylus avellana HOM05D001765 ORTHO05D003527 6.2e-24 114.0 56 98.2
Cfa006911 Carpinus fangiana HOM05D001765 ORTHO05D003527 8.9e-23 110.2 56 96.4
Cfa010228 Carpinus fangiana HOM05D001765 ORTHO05D003527 2.6e-22 108.6 56 96.4
CiPaw.08G138100 Carya illinoinensis HOM05D001765 ORTHO05D003527 1.3e-21 106.3 56 91.1
CsaV3_4G005440 Cucumis sativus L. HOM05D001765 ORTHO05D003527 1.7e-21 105.9 56 87.5
Prupe.7G161600 Prunus persica HOM05D001765 ORTHO05D003527 4.9e-21 104.4 56 85.7
QL06p035070 Quercus lobata HOM05D001765 ORTHO05D003527 4.9e-21 104.4 56 89.3
MELO3C016404.2 Cucumis melo HOM05D001765 ORTHO05D003527 1.1e-20 103.2 56 87.5
PGR119G0836 Punica granatum HOM05D001765 ORTHO05D003527 1.1e-20 103.2 56 85.7
Actinidia19217 Actinidia chinensis HOM05D001765 ORTHO05D003527 1.9e-20 102.4 56 87.5
Dinv05607 Davidia involucrata HOM05D001765 ORTHO05D003527 2.4e-20 102.1 56 87.5
Dinv10225 Davidia involucrata HOM05D001765 ORTHO05D003527 2.4e-20 102.1 56 87.5
MD02G1139500 Malus domestica HOM05D001765 ORTHO05D003527 2.4e-20 102.1 56 83.9
MD15G1252600 Malus domestica HOM05D001765 ORTHO05D003527 2.4e-20 102.1 56 83.9
CANSAT01G1346 Cannabis sativa HOM05D001765 ORTHO05D003527 3.2e-20 101.7 56 85.7
Peaxi162Scf01385g00023 Petunia axillaris HOM05D001765 ORTHO05D003527 7.1e-20 100.5 56 83.9
HPP92_011573 Vanilla planifolia HOM05D001765 ORTHO05D003527 7.1e-20 100.5 76 63.2
FvH4_1g12530 Fragaria vesca HOM05D001765 ORTHO05D003527 1.6e-19 99.4 56 82.1
FAN19G2967 Fragaria x ananassa HOM05D001765 ORTHO05D003527 1.6e-19 99.4 56 82.1
FAN28G1354 Fragaria x ananassa HOM05D001765 ORTHO05D003527 1.6e-19 99.4 56 82.1
vmacro17720 Vaccinium macrocarpon HOM05D001765 ORTHO05D003527 1.6e-19 99.4 56 83.9
vmacro22958 Vaccinium macrocarpon HOM05D001765 ORTHO05D003527 1.6e-19 99.4 56 83.9
DCAR_025478 Daucus carota HOM05D001765 ORTHO05D003527 2.1e-19 99.0 56 82.1
Nitab4.5_0000136g0160 Nicotiana tabacum HOM05D001765 ORTHO05D003527 2.1e-19 99.0 56 82.1
Nitab4.5_0009648g0050 Nicotiana tabacum HOM05D001765 ORTHO05D003527 2.1e-19 99.0 56 82.1
Peaxi162Scf00207g01134 Petunia axillaris HOM05D001765 ORTHO05D003527 2.1e-19 99.0 56 82.1
Eucgr.A00850 Eucalyptus grandis HOM05D001765 ORTHO05D003527 3.5e-19 98.2 56 82.1
RcHm_v2.0_Chr2g0100461 Rosa chinensis HOM05D001765 ORTHO05D003527 3.5e-19 98.2 56 82.1
Solyc02g062530.3 Solanum lycopersicum HOM05D001765 ORTHO05D003527 3.5e-19 98.2 56 82.1
Sopen02g013530 Solanum pennellii HOM05D001765 ORTHO05D003527 3.5e-19 98.2 56 82.1
vmacro22966 Vaccinium macrocarpon HOM05D001765 ORTHO05D003527 6.0e-19 97.4 76 63.2
Migut.H02511 Erythranthe guttata HOM05D001765 ORTHO05D003527 7.8e-19 97.1 56 80.4
Oeu002033.1 Olea europaea HOM05D001765 ORTHO05D003527 7.8e-19 97.1 56 80.4
Cc07_g11660 Coffea canephora HOM05D001765 ORTHO05D003527 1.0e-18 96.7 56 76.8
Peaxi162Scf00207g01135 Petunia axillaris HOM05D001765 ORTHO05D003527 1.0e-18 96.7 58 77.6
Rhsim08G0122600 Rhododendron simsii HOM05D001765 ORTHO05D003527 1.0e-18 96.7 76 64.5
Thecc.04G047100 Theobroma cacao HOM05D001765 ORTHO05D003527 1.0e-18 96.7 56 78.6
Aqoxy5G01550 Aquilegia oxysepala HOM05D001765 ORTHO05D003527 1.3e-18 96.3 56 80.4
VMungo0647G1062 Vigna mungo HOM05D001765 ORTHO05D003527 1.3e-18 96.3 56 73.2
SalBow8G1820 Salvia bowleyana HOM05D001765 ORTHO05D003527 2.3e-18 95.5 76 64.5
GSVIVG01018876001 Vitis vinifera HOM05D001765 ORTHO05D003527 2.3e-18 95.5 56 78.6
Dinv40028 Davidia involucrata HOM05D001765 ORTHO05D003527 3.0e-18 95.1 56 80.4
Glyma.14G008500 Glycine max HOM05D001765 ORTHO05D003527 3.0e-18 95.1 56 73.2
THA.LOC104826037 Tarenaya hassleriana HOM05D001765 ORTHO05D003527 3.0e-18 95.1 56 80.4
CSS0038408 Camellia sinensis var. sinensis HOM05D001765 ORTHO05D003527 3.9e-18 94.7 56 76.8
Cc08_g04490 Coffea canephora HOM05D001765 ORTHO05D003527 3.9e-18 94.7 56 75.0
SGA_v2.0_scaffold7G03543 Striga asiatica HOM05D006805 ORTHO05D003527 3.9e-18 94.7 56 76.8
unitig_899.g14639 Utricularia gibba HOM05D001765 ORTHO05D003527 3.9e-18 94.7 76 64.5
Aa31LG11G8000 Aethionema arabicum HOM05D001765 ORTHO05D003527 6.6e-18 94.0 56 80.4
BolC2t11799H Brassica oleracea HOM05D001765 ORTHO05D003527 6.6e-18 94.0 56 82.1
Duzib147G0794 Durio zibethinus HOM05D001765 ORTHO05D003527 6.6e-18 94.0 56 76.8
Lalb_Chr08g0235841 Lupinus albus HOM05D001765 ORTHO05D003527 6.6e-18 94.0 56 78.6
BcaC03g17719 Brassica carinata HOM05D001765 ORTHO05D005876 8.6e-18 93.6 54 85.2
A02p38130 Brassica napus HOM05D001765 ORTHO05D003527 8.6e-18 93.6 54 85.2
C02p57300 Brassica napus HOM05D001765 ORTHO05D003527 8.6e-18 93.6 54 85.2
CDE04G0335 Ceratophyllum demersum HOM05D001765 ORTHO05D003527 1.1e-17 93.2 76 61.8
Thhalv10005097m.g Eutrema salsugineum HOM05D001765 ORTHO05D003527 1.1e-17 93.2 54 83.3
MBI18_g05082_MAGBIO Magnolia biondii HOM05D001765 ORTHO05D003527 1.1e-17 93.2 50 84.0
Potri.005G118900 Populus trichocarpa HOM05D001765 ORTHO05D003527 1.1e-17 93.2 56 78.6
Sabra05G0098000 Salix brachista HOM05D001765 ORTHO05D003527 1.1e-17 93.2 56 78.6
Sp2g19750 Schrenkiella parvula HOM05D001765 ORTHO05D003527 1.1e-17 93.2 54 83.3
SpUn0021_0100 Schrenkiella parvula HOM05D001765 ORTHO05D003527 1.1e-17 93.2 54 83.3
Phvul.008G284700 Phaseolus vulgaris HOM05D001765 ORTHO05D003527 1.5e-17 92.8 56 71.4
BcaB07g34155 Brassica carinata HOM05D001765 ORTHO05D003527 1.9e-17 92.4 54 83.3
CDE07G0806 Ceratophyllum demersum HOM05D001765 ORTHO05D003527 1.9e-17 92.4 76 61.8
Sed0024924 Sechium edule HOM05D001765 ORTHO05D003527 2.5e-17 92.0 54 77.8
Carub.0008s0929 Capsella rubella HOM05D001765 ORTHO05D003527 3.3e-17 91.7 54 81.5
Gohir.D03G000300 Gossypium hirsutum HOM05D001765 ORTHO05D003527 3.3e-17 91.7 56 75.0
Gorai.003G000600 Gossypium raimondii HOM05D001765 ORTHO05D003527 3.3e-17 91.7 56 75.0
Gorai.009G456300 Gossypium raimondii HOM05D001765 ORTHO05D003527 3.3e-17 91.7 57 73.7
MBI10_g00746_MAGBIO Magnolia biondii HOM05D001765 ORTHO05D003527 3.3e-17 91.7 81 58.0
Gohir.A07G233400 Gossypium hirsutum HOM05D001765 ORTHO05D003527 5.6e-17 90.9 76 57.9
Manes.02G222800 Manihot esculenta HOM05D001765 ORTHO05D003527 7.3e-17 90.5 56 75.0
AL8G23120 Arabidopsis lyrata HOM05D001765 ORTHO05D003527 9.6e-17 90.1 54 79.6
AT5G49410 Arabidopsis thaliana HOM05D001765 ORTHO05D003527 9.6e-17 90.1 54 79.6
arahy.Tifrunner.gnm1.ann1.86P1YE Arachis hypogaea HOM05D001765 ORTHO05D003527 9.6e-17 90.1 56 75.0
arahy.Tifrunner.gnm1.ann1.CUK8Y6 Arachis hypogaea HOM05D001765 ORTHO05D003527 9.6e-17 90.1 56 75.0
arahy.Tifrunner.gnm1.ann1.IX6XHP Arachis hypogaea HOM05D001765 ORTHO05D003527 9.6e-17 90.1 56 75.0
Gohir.A05G416501 Gossypium hirsutum HOM05D001765 ORTHO05D003527 9.6e-17 90.1 56 73.2
Gohir.A05G416901 Gossypium hirsutum HOM05D001765 ORTHO05D003527 9.6e-17 90.1 56 73.2
Gorai.004G000500 Gossypium raimondii HOM05D001765 ORTHO05D003527 9.6e-17 90.1 56 73.2
Gorai.012G000100 Gossypium raimondii HOM05D001765 ORTHO05D003527 9.6e-17 90.1 56 73.2
Gohir.D12G000200 Gossypium hirsutum HOM05D001765 ORTHO05D003527 1.2e-16 89.7 56 73.2
Lj1g0003490 Lotus japonicus HOM05D001765 ORTHO05D003527 1.2e-16 89.7 56 71.4
CARHR182120 Cardamine hirsuta HOM05D001765 ORTHO05D003527 1.6e-16 89.4 54 79.6
ATR1125G025 Amborella trichopoda HOM05D001765 ORTHO05D003527 2.1e-16 89.0 48 85.4
ClCG07G008720 Citrullus lanatus HOM05D001765 ORTHO05D003527 2.1e-16 89.0 60 76.7
Gorai.010G246100 Gossypium raimondii HOM05D001765 ORTHO05D003527 2.8e-16 88.6 56 73.2
Gohir.A10G243200 Gossypium hirsutum HOM05D001765 ORTHO05D003527 4.7e-16 87.8 56 73.2
arahy.Tifrunner.gnm1.ann1.WC8DZD Arachis hypogaea HOM05D001765 ORTHO05D003527 2.4e-15 85.5 56 66.1
Atru.chr3.680 Acer truncatum HOM05D001765 ORTHO05D003527 3.1e-15 85.1 51 76.5
Atru.chr3.726 Acer truncatum HOM05D001765 ORTHO05D003527 3.1e-15 85.1 51 76.5
Gorai.N017600 Gossypium raimondii HOM05D003958 ORTHO05D004864 4.0e-15 84.7 58 69.0
TPR.G1302 Trifolium pratense HOM05D001765 ORTHO05D003527 4.0e-15 84.7 56 69.6
TWI09G0332 Tripterygium wilfordii HOM05D001765 ORTHO05D003527 4.0e-15 84.7 57 73.7
Gohir.A01G232040 Gossypium hirsutum HOM05D001765 ORTHO05D003527 5.2e-15 84.3 56 69.6
Gohir.A08G000008 Gossypium hirsutum HOM05D001765 ORTHO05D003527 5.2e-15 84.3 56 69.6
Gorai.007G380100 Gossypium raimondii HOM05D001765 ORTHO05D003527 5.2e-15 84.3 56 69.6
TWI73G1042 Tripterygium wilfordii HOM05D001765 ORTHO05D003527 8.9e-15 83.6 57 71.9
arahy.Tifrunner.gnm1.ann1.EZ0MZE Arachis hypogaea HOM05D001765 ORTHO05D003527 1.2e-14 83.2 56 66.1
arahy.Tifrunner.gnm1.ann1.M20B87 Arachis hypogaea HOM05D001765 ORTHO05D003527 1.2e-14 83.2 56 66.1
EL10Ac1g02248 Beta vulgaris HOM05D001765 ORTHO05D003527 1.2e-14 83.2 58 74.1
Gohir.D10G000101 Gossypium hirsutum HOM05D001765 ORTHO05D003527 1.2e-14 83.2 56 67.9
Ca_06451_v3 Cicer arietinum L. HOM05D001765 ORTHO05D003527 2.6e-14 82.0 56 67.9
Gorai.006G275100 Gossypium raimondii HOM05D001765 ORTHO05D003527 2.6e-14 82.0 56 66.1
Hund05221 Selenicereus undatus HOM05D001765 ORTHO05D003527 2.6e-14 82.0 54 72.2
Psat2g004640 Pisum sativum HOM05D001765 ORTHO05D003527 3.4e-14 81.6 56 67.9
Medtr5g097230 Medicago truncatula HOM05D001765 ORTHO05D003527 7.6e-14 80.5 56 66.1
Zm00001eb314680 Zea mays HOM05D001765 ORTHO05D003527 7.6e-14 80.5 56 66.1
Gohir.D04G192700 Gossypium hirsutum HOM05D001765 ORTHO05D003527 1.3e-13 79.7 56 66.1
Os08g0360000 Oryza sativa ssp. japonica HOM05D001765 ORTHO05D003527 2.9e-13 78.6 56 67.9
Ah.00g000090 Amaranthus hybridus HOM05D001765 ORTHO05D003527 3.8e-13 78.2 58 69.0
Cpa.g.sc6.177 Carica papaya HOM05D001765 ORTHO05D003527 1.9e-12 75.9 40 85.0
PGSC0003DMG400015496 Solanum tuberosum HOM05D001765 ORTHO05D003527 1.9e-12 75.9 40 87.5
SEGI_06712 Sequoiadendron giganteum HOM05D001765 ORTHO05D003527 4.2e-12 74.7 56 62.5
ECA232G4044 Erigeron canadensis HOM05D001765 ORTHO05D003527 2.1e-11 72.4 76 43.4
Actinidia26093 Actinidia chinensis HOM05D001765 ORTHO05D003527 2.7e-11 72.0 40 80.0
HanXRQChr09g0261241 Helianthus annuus HOM05D001765 ORTHO05D003527 4.6e-11 71.2 56 55.4
Lsat_1_v5_gn_4_151821 Lactuca sativa HOM05D001765 ORTHO05D003527 4.6e-11 71.2 56 55.4
SEGI_00799 Sequoiadendron giganteum HOM05D001765 ORTHO05D003527 1.1e-07 60.1 60 41.7


User provided reference genes

Program Settings