Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa010224 Carpinus fangiana HOM05D007375 ORTHO05D009293 8.5e-126 453.8 240 100.0
CiPaw.13G125500 Carya illinoinensis HOM05D007375 ORTHO05D009293 9.9e-42 174.5 100 85.0
Haze_23611 Corylus avellana HOM05D007375 ORTHO05D009293 1.6e-39 167.2 109 91.7
Hma1.2p1_1811F.1_g303540 Hydrangea macrophylla HOM05D007375 ORTHO05D009293 3.5e-39 166.0 131 67.9
Thecc.09G269700 Theobroma cacao HOM05D007375 ORTHO05D009293 7.4e-37 158.3 101 78.2
GSVIVG01037526001 Vitis vinifera HOM05D007375 ORTHO05D009293 8.2e-36 154.8 96 75.0
Actinidia22459 Actinidia chinensis HOM05D007375 ORTHO05D009293 1.4e-35 154.1 100 74.0
MD11G1177000 Malus domestica HOM05D007375 ORTHO05D009293 1.4e-35 154.1 111 70.3
Gohir.A07G113900 Gossypium hirsutum HOM05D007375 ORTHO05D009293 1.8e-35 153.7 83 88.0
FAN16G0622 Fragaria x ananassa HOM05D007375 ORTHO05D009293 3.1e-35 152.9 105 76.2
vmacro14306 Vaccinium macrocarpon HOM05D007375 ORTHO05D009293 3.1e-35 152.9 100 75.0
FAN21G2595 Fragaria x ananassa HOM05D007375 ORTHO05D009293 4.0e-35 152.5 105 75.2
MD03G1161000 Malus domestica HOM05D007375 ORTHO05D009293 5.3e-35 152.1 111 68.5
Duzib168G1424 Durio zibethinus HOM05D007375 ORTHO05D009293 6.9e-35 151.8 101 75.2
Gohir.D07G117600 Gossypium hirsutum HOM05D007375 ORTHO05D009293 6.9e-35 151.8 83 86.7
Gorai.001G126500 Gossypium raimondii HOM05D007375 ORTHO05D009293 6.9e-35 151.8 83 86.7
FvH4_3g26920 Fragaria vesca HOM05D007375 ORTHO05D009293 9.0e-35 151.4 105 75.2
FAN11G1199 Fragaria x ananassa HOM05D007375 ORTHO05D009293 9.0e-35 151.4 105 75.2
FAN25G3479 Fragaria x ananassa HOM05D000507 ORTHO05D000416 9.0e-35 151.4 116 71.6
Atru.chr3.3047 Acer truncatum HOM05D007375 ORTHO05D009293 2.0e-34 150.2 104 71.2
Atru.chr3.3056 Acer truncatum HOM05D007375 ORTHO05D009293 2.0e-34 150.2 104 71.2
CANSAT54G0888 Cannabis sativa HOM05D007375 ORTHO05D009293 3.4e-34 149.4 101 72.3
Rhsim01G0198300 Rhododendron simsii HOM05D007375 ORTHO05D009293 3.4e-34 149.4 115 65.2
CSS0023504 Camellia sinensis var. sinensis HOM05D007375 ORTHO05D009293 4.5e-34 149.1 105 73.3
Duzib170G0509 Durio zibethinus HOM05D007375 ORTHO05D009293 1.0e-33 147.9 84 82.1
RcHm_v2.0_Chr5g0049271 Rosa chinensis HOM05D007375 ORTHO05D009293 2.2e-33 146.7 97 79.4
TAR623G0701 Trochodendron aralioides HOM05D007375 ORTHO05D009293 2.9e-33 146.4 98 74.5
Nitab4.5_0002498g0050 Nicotiana tabacum HOM05D007375 ORTHO05D009293 6.5e-33 145.2 101 72.3
PSO339G5659 Papaver somniferum HOM05D007375 ORTHO05D009293 8.4e-33 144.8 91 72.5
Peaxi162Scf00259g00119 Petunia axillaris HOM05D007375 ORTHO05D009293 1.1e-32 144.4 109 67.9
CsaV3_1G004520 Cucumis sativus L. HOM05D007375 ORTHO05D009293 1.4e-32 144.1 111 63.1
PSO384G3190 Papaver somniferum HOM05D007375 ORTHO05D009293 1.9e-32 143.7 86 74.4
Manes.04G063400 Manihot esculenta HOM05D007375 ORTHO05D009293 2.5e-32 143.3 98 71.4
MELO3C017379.2 Cucumis melo HOM05D007375 ORTHO05D009293 3.2e-32 142.9 111 62.2
Nn6g33246 Nelumbo nucifera HOM05D007375 ORTHO05D009293 9.3e-32 141.4 81 79.0
ClCG06G014160 Citrullus lanatus HOM05D007375 ORTHO05D009293 2.1e-31 140.2 86 76.7
Nitab4.5_0007815g0030 Nicotiana tabacum HOM05D007375 ORTHO05D009293 2.1e-31 140.2 101 70.3
Cc01_g08020 Coffea canephora HOM05D007375 ORTHO05D009293 3.0e-30 136.3 100 69.0
CAN.G742.2 Capsicum annuum HOM05D007375 ORTHO05D009293 3.9e-30 136.0 99 72.7
QL01p018876 Quercus lobata HOM05D007375 ORTHO05D009293 3.9e-30 136.0 94 76.6
Solyc11g071710.2 Solanum lycopersicum HOM05D007375 ORTHO05D009293 3.9e-30 136.0 75 86.7
Sopen11g029380 Solanum pennellii HOM05D007375 ORTHO05D009293 3.9e-30 136.0 75 86.7
Sed0019994 Sechium edule HOM05D007375 ORTHO05D009293 5.1e-30 135.6 131 51.9
Psat2g023920 Pisum sativum HOM05D007375 ORTHO05D009293 8.7e-30 134.8 118 61.0
Lsat_1_v5_gn_6_49101 Lactuca sativa HOM05D007375 ORTHO05D009293 1.1e-29 134.4 96 69.8
Lj2E833T0 Lonicera japonica HOM05D007375 ORTHO05D009293 1.1e-29 134.4 103 63.1
LjContig00564g0003226 Lotus japonicus HOM05D007375 ORTHO05D009293 1.5e-29 134.0 92 73.9
HanXRQChr13g0404191 Helianthus annuus HOM05D007375 ORTHO05D009293 3.3e-29 132.9 93 68.8
Migut.N02430 Erythranthe guttata HOM05D007375 ORTHO05D009293 9.7e-29 131.3 79 78.5
MSTRG.18802 Avicennia marina HOM05D007375 ORTHO05D009293 1.3e-28 131.0 78 79.5
Lalb_Chr10g0105741 Lupinus albus HOM05D007375 ORTHO05D009293 2.8e-28 129.8 90 71.1
Potri.009G155700 Populus trichocarpa HOM05D007375 ORTHO05D009293 2.8e-28 129.8 83 75.9
PGSC0003DMG401003010 Solanum tuberosum HOM05D007375 ORTHO05D009293 2.8e-28 129.8 75 84.0
EL10Ac7g16260 Beta vulgaris HOM05D007375 ORTHO05D009293 3.7e-28 129.4 94 67.0
Sabra09G0122000 Salix brachista HOM05D007375 ORTHO05D009293 6.3e-28 128.6 83 75.9
Glyma.02G271400 Glycine max HOM05D007375 ORTHO05D009293 8.2e-28 128.3 112 61.6
Phvul.008G210600 Phaseolus vulgaris HOM05D007375 ORTHO05D009293 1.8e-27 127.1 109 60.6
CDE07G1152 Ceratophyllum demersum HOM05D007375 ORTHO05D009293 4.1e-27 125.9 92 62.0
VMungo0647G0066 Vigna mungo HOM05D007375 ORTHO05D009293 4.1e-27 125.9 90 68.9
ECA233G1923 Erigeron canadensis HOM05D000870 ORTHO05D000715 5.3e-27 125.6 93 67.7
Sc21g0006670 Simmondsia chinensis HOM05D007375 ORTHO05D009293 5.3e-27 125.6 92 65.2
ATR0697G291 Amborella trichopoda HOM05D007375 ORTHO05D009293 1.2e-26 124.4 80 71.2
Medtr5g086670 Medicago truncatula HOM05D007375 ORTHO05D009293 1.2e-26 124.4 117 54.7
Hund18815 Selenicereus undatus HOM05D007375 ORTHO05D009293 3.4e-26 122.9 187 44.4
Ciclev10029424m.g Citrus clementina HOM05D007375 ORTHO05D009293 1.0e-25 121.3 130 56.9
CARHR152710 Cardamine hirsuta HOM05D007375 ORTHO05D009293 3.8e-25 119.4 85 69.4
Aa31LG2G17160 Aethionema arabicum HOM05D007375 ORTHO05D009293 1.9e-24 117.1 85 67.1
AUR62020198 Chenopodium quinoa HOM05D007375 ORTHO05D009293 1.9e-24 117.1 71 78.9
AL5G22060 Arabidopsis lyrata HOM05D007375 ORTHO05D009293 1.2e-23 114.4 85 64.7
AT3G44020 Arabidopsis thaliana HOM05D007375 ORTHO05D009293 2.1e-23 113.6 84 65.5
Sp5g17280 Schrenkiella parvula HOM05D007375 ORTHO05D009293 2.1e-23 113.6 83 65.1
BcaC01g02084 Brassica carinata HOM05D007375 ORTHO05D009293 2.7e-23 113.2 82 67.1
A06p22290 Brassica napus HOM05D007375 ORTHO05D009293 2.7e-23 113.2 82 67.1
C03p68750 Brassica napus HOM05D007375 ORTHO05D009293 2.7e-23 113.2 82 67.1
BolC3t19129H Brassica oleracea HOM05D007375 ORTHO05D009293 2.7e-23 113.2 82 67.1
BraA06t25313Z Brassica rapa HOM05D007375 ORTHO05D009293 2.7e-23 113.2 82 67.1
Thhalv10021645m.g Eutrema salsugineum HOM05D007375 ORTHO05D009293 2.7e-23 113.2 86 61.6
arahy.Tifrunner.gnm1.ann1.MUTN5S Arachis hypogaea HOM05D007375 ORTHO05D009293 4.6e-23 112.5 76 71.1
arahy.Tifrunner.gnm1.ann1.R1KXAM Arachis hypogaea HOM05D007375 ORTHO05D009293 4.6e-23 112.5 76 71.1
BcaB01g01208 Brassica carinata HOM05D007375 ORTHO05D009293 7.9e-23 111.7 82 65.9
HPP92_000979 Vanilla planifolia HOM05D007375 ORTHO05D009293 1.3e-22 110.9 70 72.9
Os01g0930000 Oryza sativa ssp. japonica HOM05D007375 ORTHO05D009293 1.8e-22 110.5 70 70.0
Mapoly0036s0048 Marchantia polymorpha HOM05D007375 ORTHO05D009293 8.7e-22 108.2 105 54.3
Zm00001eb370040 Zea mays HOM05D007375 ORTHO05D009293 8.7e-22 108.2 70 67.1
Actinidia06350 Actinidia chinensis HOM05D007375 ORTHO05D009293 5.7e-21 105.5 67 74.6
Carub.0005s0977 Capsella rubella HOM05D007375 ORTHO05D009293 5.7e-21 105.5 85 61.2
Prupe.6G149200 Prunus persica HOM05D007375 ORTHO05D009293 1.3e-20 104.4 101 63.4
SEGI_05685 Sequoiadendron giganteum HOM05D007375 ORTHO05D009293 2.8e-20 103.2 92 56.5
AagrBONN_evm.TU.Sc2ySwM_362.1659 Anthoceros agrestis HOM05D007375 ORTHO05D009293 1.7e-17 94.0 70 61.4
SGA_v2.0_scaffold7G04014 Striga asiatica HOM05D007375 ORTHO05D009293 5.0e-17 92.4 78 65.4
Pp3c7_23060 Physcomitrium patens HOM05D007375 ORTHO05D009293 9.4e-16 88.2 65 63.1
Pp3c11_5080 Physcomitrium patens HOM05D007375 ORTHO05D009293 1.2e-15 87.8 65 63.1
Eucgr.J00596 Eucalyptus grandis HOM05D007375 ORTHO05D009293 2.7e-15 86.7 52 67.3
unitig_22.g6168 Utricularia gibba HOM05D007375 ORTHO05D009293 4.7e-15 85.9 120 46.7
Oeu048815.1 Olea europaea HOM05D007375 ORTHO05D009293 4.4e-13 79.3 84 60.7
Aa31LG4G13610 Aethionema arabicum HOM05D007375 ORTHO05D009293 4.1e-11 72.8 58 65.5
Glyma.14G019800 Glycine max HOM05D007375 ORTHO05D009293 4.5e-10 69.3 52 67.3
PGR119G2080 Punica granatum HOM05D007375 ORTHO05D009293 3.2e-08 63.2 91 47.3
Dinv18872 Davidia involucrata HOM05D007375 ORTHO05D009293 1.6e-07 60.8 36 86.1
COL.COLO4_25390 Corchorus olitorius HOM05D007375 ORTHO05D009293 6.1e-07 58.9 30 80.0
DCAR_012259 Daucus carota HOM05D007375 ORTHO05D009293 1.0e-06 58.2 67 58.2
TPR.G22173 Trifolium pratense HOM05D007375 ORTHO05D009293 1.8e-06 57.4 105 45.7


User provided reference genes

Program Settings