Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa010203 Carpinus fangiana HOM05D007233 ORTHO05D009043 5.7e-86 320.9 160 100.0
Haze_23472 Corylus avellana HOM05D007233 ORTHO05D009043 7.1e-44 181.0 131 73.3
Haze_23491 Corylus avellana HOM05D007233 ORTHO05D009043 1.0e-42 177.2 131 73.3
Haze_23494 Corylus avellana HOM05D007233 ORTHO05D009043 6.6e-42 174.5 98 86.7
Cfa020420 Carpinus fangiana HOM05D007233 ORTHO05D009043 1.2e-40 170.2 105 78.1
Haze_23479 Corylus avellana HOM05D007233 ORTHO05D009043 1.3e-37 160.2 93 84.9
CiPaw.14G104900 Carya illinoinensis HOM05D007233 ORTHO05D009043 1.1e-36 157.1 98 79.6
QL01p014111 Quercus lobata HOM05D007233 ORTHO05D009043 1.9e-28 129.8 93 72.0
Lalb_Chr03g0027851 Lupinus albus HOM05D007233 ORTHO05D009043 1.2e-27 127.1 98 67.3
Sabra04G0127900 Salix brachista HOM05D007233 ORTHO05D009043 7.9e-27 124.4 101 68.3
Lj3g0012043 Lotus japonicus HOM05D007233 ORTHO05D009043 1.3e-26 123.6 98 66.3
Potri.004G190200 Populus trichocarpa HOM05D007233 ORTHO05D009043 1.3e-26 123.6 101 67.3
Manes.04G010800 Manihot esculenta HOM05D007233 ORTHO05D009043 1.8e-26 123.2 101 65.3
PGR119G2223 Punica granatum HOM05D007233 ORTHO05D009043 2.3e-26 122.9 97 67.0
Atru.chr3.3421 Acer truncatum HOM05D007233 ORTHO05D009043 3.0e-26 122.5 101 63.4
Gohir.A13G223500 Gossypium hirsutum HOM05D007233 ORTHO05D009043 3.0e-26 122.5 101 66.3
Medtr4g056300 Medicago truncatula HOM05D007233 ORTHO05D009043 3.0e-26 122.5 102 66.7
TPR.G32017 Trifolium pratense HOM05D007233 ORTHO05D009043 3.0e-26 122.5 102 66.7
Thecc.09G294400 Theobroma cacao HOM05D007233 ORTHO05D009043 3.9e-26 122.1 101 65.3
Eucgr.F03331 Eucalyptus grandis HOM05D007233 ORTHO05D009043 5.1e-26 121.7 98 65.3
Ca_10766_v3 Cicer arietinum L. HOM05D007233 ORTHO05D009043 8.7e-26 120.9 101 64.4
Gohir.D13G228300 Gossypium hirsutum HOM05D007233 ORTHO05D009043 1.1e-25 120.6 101 66.3
MSTRG.17742 Avicennia marina HOM05D007233 ORTHO05D009043 1.9e-25 119.8 100 66.0
Glyma.11G190700 Glycine max HOM05D007233 ORTHO05D009043 3.3e-25 119.0 102 63.7
VMungo1127G1048 Vigna mungo HOM05D007233 ORTHO05D009043 7.4e-25 117.9 98 62.2
Phvul.011G088600 Phaseolus vulgaris HOM05D007233 ORTHO05D009043 9.6e-25 117.5 98 62.2
COL.COLO4_31139 Corchorus olitorius HOM05D007233 ORTHO05D009043 2.1e-24 116.3 98 64.3
EL10Ac9g21047 Beta vulgaris HOM05D007233 ORTHO05D009043 4.8e-24 115.2 99 61.6
ClCG01G013980 Citrullus lanatus HOM05D007233 ORTHO05D009043 4.8e-24 115.2 98 62.2
CSS0019792 Camellia sinensis var. sinensis HOM05D007233 ORTHO05D009043 6.2e-24 114.8 98 61.2
CANSAT78G0435 Cannabis sativa HOM05D007233 ORTHO05D009043 6.2e-24 114.8 101 61.4
GSVIVG01031420001 Vitis vinifera HOM05D007233 ORTHO05D009043 6.2e-24 114.8 98 62.2
TAR369G0714 Trochodendron aralioides HOM05D007233 ORTHO05D009043 8.1e-24 114.4 98 60.2
Migut.N02527 Erythranthe guttata HOM05D007233 ORTHO05D009043 1.1e-23 114.0 99 61.6
Sed0016181 Sechium edule HOM05D007233 ORTHO05D009043 1.8e-23 113.2 98 61.2
THA.LOC104826400 Tarenaya hassleriana HOM05D007233 ORTHO05D009043 1.8e-23 113.2 98 61.2
SalBow3G1176 Salvia bowleyana HOM05D007233 ORTHO05D009043 2.4e-23 112.8 99 60.6
Aa31LG1G6480 Aethionema arabicum HOM05D007233 ORTHO05D009043 3.1e-23 112.5 98 59.2
FvH4_3g30010 Fragaria vesca HOM05D007233 ORTHO05D009043 3.1e-23 112.5 99 58.6
Ciclev10030019m.g Citrus clementina HOM05D007233 ORTHO05D009043 5.3e-23 111.7 102 61.8
SHI05395 Sapria himalayana HOM05D007233 ORTHO05D009043 6.9e-23 111.3 101 62.4
Cc01_g10010 Coffea canephora HOM05D007233 ORTHO05D009043 9.0e-23 110.9 97 59.8
FAN25G1956 Fragaria x ananassa HOM05D007233 ORTHO05D009043 9.0e-23 110.9 99 57.6
Peaxi162Scf00150g00710 Petunia axillaris HOM05D007233 ORTHO05D009043 1.2e-22 110.5 98 58.2
Carub.0001s0774 Capsella rubella HOM05D007233 ORTHO05D009043 1.5e-22 110.2 98 60.2
CARHR008260 Cardamine hirsuta HOM05D007233 ORTHO05D009043 2.6e-22 109.4 98 58.2
MELO3C004843.2 Cucumis melo HOM05D007233 ORTHO05D009043 4.5e-22 108.6 101 58.4
RcHm_v2.0_Chr5g0055931 Rosa chinensis HOM05D007233 ORTHO05D009043 4.5e-22 108.6 99 55.6
Aqoxy1G01014 Aquilegia oxysepala HOM05D007233 ORTHO05D009043 5.8e-22 108.2 93 57.0
Nn6g35132 Nelumbo nucifera HOM05D007233 ORTHO05D009043 5.8e-22 108.2 128 47.7
A06p05410 Brassica napus HOM05D007233 ORTHO05D009043 7.6e-22 107.8 98 59.2
BraA06t23750Z Brassica rapa HOM05D007233 ORTHO05D009043 7.6e-22 107.8 98 59.2
AUR62031769 Chenopodium quinoa HOM05D007233 ORTHO05D009043 7.6e-22 107.8 102 55.9
MD11G1153700 Malus domestica HOM05D007233 ORTHO05D009043 7.6e-22 107.8 97 58.8
BcaB07g34087 Brassica carinata HOM05D007233 ORTHO05D009043 9.9e-22 107.5 98 58.2
C05p06530 Brassica napus HOM05D007233 ORTHO05D009043 9.9e-22 107.5 98 58.2
BolC5t29413H Brassica oleracea HOM05D007233 ORTHO05D009043 9.9e-22 107.5 98 58.2
FAN21G0394 Fragaria x ananassa HOM05D007233 ORTHO05D009043 9.9e-22 107.5 99 56.6
AL1G18800 Arabidopsis lyrata HOM05D007233 ORTHO05D009043 1.7e-21 106.7 82 64.6
Ah.01g016160 Amaranthus hybridus HOM05D007233 ORTHO05D009043 2.2e-21 106.3 105 52.4
Sp1g07040 Schrenkiella parvula HOM05D007233 ORTHO05D009043 2.2e-21 106.3 101 56.4
Hund07722 Selenicereus undatus HOM05D007233 ORTHO05D009043 4.9e-21 105.1 98 54.1
AT1G08390 Arabidopsis thaliana HOM05D007233 ORTHO05D009043 6.4e-21 104.8 82 62.2
CsaV3_1G014310 Cucumis sativus L. HOM05D007233 ORTHO05D009043 6.4e-21 104.8 101 57.4
HanXRQChr11g0345871 Helianthus annuus HOM05D007233 ORTHO05D009043 6.4e-21 104.8 98 58.2
Prupe.6G116400 Prunus persica HOM05D007233 ORTHO05D009043 6.4e-21 104.8 85 63.5
vmacro03232 Vaccinium macrocarpon HOM05D007233 ORTHO05D009043 6.4e-21 104.8 92 58.7
ATR0665G357 Amborella trichopoda HOM05D007233 ORTHO05D009043 8.4e-21 104.4 92 58.7
SGA_v2.0_scaffold93G28323 Striga asiatica HOM05D007233 ORTHO05D009043 1.1e-20 104.0 101 53.5
Lsat_1_v5_gn_1_61521 Lactuca sativa HOM05D007233 ORTHO05D009043 1.4e-20 103.6 98 58.2
PGSC0003DMG400000464 Solanum tuberosum HOM05D007233 ORTHO05D009043 1.4e-20 103.6 98 55.1
Dinv29405 Davidia involucrata HOM05D007233 ORTHO05D009043 3.2e-20 102.4 104 54.8
MBI04_g22192_MAGBIO Magnolia biondii HOM05D007233 ORTHO05D009043 4.2e-20 102.1 98 56.1
Solyc11g066690.2 Solanum lycopersicum HOM05D007233 ORTHO05D009043 4.2e-20 102.1 98 55.1
Sopen11g026420 Solanum pennellii HOM05D007233 ORTHO05D009043 4.2e-20 102.1 98 55.1
arahy.Tifrunner.gnm1.ann1.5NF9YD Arachis hypogaea HOM05D007233 ORTHO05D009043 5.5e-20 101.7 108 51.9
Nitab4.5_0000442g0180 Nicotiana tabacum HOM05D007233 ORTHO05D009043 7.1e-20 101.3 94 57.4
Thhalv10009077m.g Eutrema salsugineum HOM05D007233 ORTHO05D009043 9.3e-20 100.9 82 61.0
unitig_699.g19183 Utricularia gibba HOM05D007233 ORTHO05D009043 1.2e-19 100.5 92 54.3
PSO063G0378 Papaver somniferum HOM05D007233 ORTHO05D009043 2.1e-19 99.8 80 63.8
Rhsim13G0103700 Rhododendron simsii HOM05D007233 ORTHO05D009043 2.1e-19 99.8 92 56.5
CAN.G644.46 Capsicum annuum HOM05D007233 ORTHO05D009043 3.5e-19 99.0 98 56.1
Duzib170G0414 Durio zibethinus HOM05D007233 ORTHO05D009043 3.5e-19 99.0 101 58.4
Haze_23488 Corylus avellana HOM05D007233 ORTHO05D009043 1.0e-18 97.4 91 61.5
PSO339G4613 Papaver somniferum HOM05D007233 ORTHO05D009043 1.0e-18 97.4 80 61.2
DCAR_015489 Daucus carota HOM05D007233 ORTHO05D009043 8.7e-18 94.4 98 50.0
ECA248G0451 Erigeron canadensis HOM05D007233 ORTHO05D009043 2.5e-17 92.8 97 51.5
Os03g0684300 Oryza sativa ssp. japonica HOM05D007233 ORTHO05D009043 3.7e-16 89.0 116 44.8
Zm00001eb053200 Zea mays HOM05D007233 ORTHO05D009043 1.5e-14 83.6 93 48.4
Pp3c26_4940 Physcomitrium patens HOM05D007233 ORTHO05D009043 4.9e-13 78.6 96 44.8
Pp3c26_4950 Physcomitrium patens HOM05D007233 ORTHO05D009043 4.9e-13 78.6 96 44.8
Mapoly0016s0182 Marchantia polymorpha HOM05D007233 ORTHO05D009043 6.5e-13 78.2 96 44.8
Gorai.013G259000 Gossypium raimondii HOM05D007233 ORTHO05D009043 1.1e-07 60.8 63 58.7
ClCG08G000500 Citrullus lanatus HOM05D007233 ORTHO05D009043 3.1e-07 59.3 64 51.6
Cpa.g.sc47.40 Carica papaya HOM05D007233 ORTHO05D009043 4.1e-07 58.9 64 51.6
Oeu000616.2 Olea europaea HOM05D007233 ORTHO05D009043 1.0e-05 54.3 69 46.4


User provided reference genes

Program Settings