Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa010180 Carpinus fangiana HOM05D004212 ORTHO05D005128 1.1e-170 603.2 300 100.0
Haze_20882 Corylus avellana HOM05D004212 ORTHO05D005128 5.8e-140 501.1 334 80.8
Haze_20891 Corylus avellana HOM05D004212 ORTHO05D005128 1.7e-139 499.6 334 80.5
CiPaw.09G201200 Carya illinoinensis HOM05D004212 ORTHO05D005128 1.7e-131 473.0 303 79.2
Thecc.05G029300 Theobroma cacao HOM05D004212 ORTHO05D005128 2.5e-114 416.0 305 71.5
GSVIVG01034068001 Vitis vinifera HOM05D004212 ORTHO05D005128 3.0e-112 409.1 300 70.0
Prupe.6G264400 Prunus persica HOM05D004212 ORTHO05D005128 4.1e-109 398.7 317 69.4
Manes.09G098300 Manihot esculenta HOM05D004212 ORTHO05D005128 3.4e-108 395.6 311 67.5
CANSAT35G0035 Cannabis sativa HOM05D004212 ORTHO05D005128 8.4e-107 391.0 307 69.1
TAR633G1640 Trochodendron aralioides HOM05D004212 ORTHO05D005128 1.9e-106 389.8 306 66.0
FAN12G3486 Fragaria x ananassa HOM05D004212 ORTHO05D005128 3.2e-106 389.0 302 70.2
Gohir.D01G209900 Gossypium hirsutum HOM05D004212 ORTHO05D005128 3.2e-106 389.0 304 66.8
Gorai.002G255500 Gossypium raimondii HOM05D004212 ORTHO05D005128 3.2e-106 389.0 304 66.8
FAN12G2442 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.2e-105 387.1 302 69.9
Lalb_Chr03g0042691 Lupinus albus HOM05D004212 ORTHO05D005128 7.9e-105 384.4 306 65.4
RcHm_v2.0_Chr4g0406841 Rosa chinensis HOM05D004212 ORTHO05D005128 5.1e-104 381.7 302 69.2
Gohir.A01G221000 Gossypium hirsutum HOM05D004212 ORTHO05D005128 6.7e-104 381.3 304 65.8
FAN07G0792 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.1e-103 380.6 302 68.5
Eucgr.K03043 Eucalyptus grandis HOM05D004212 ORTHO05D005128 9.7e-103 377.5 300 67.0
ClCG04G007620 Citrullus lanatus HOM05D004212 ORTHO05D005128 2.8e-102 375.9 320 62.8
Ca_07566_v3 Cicer arietinum L. HOM05D004212 ORTHO05D005128 1.8e-101 373.2 307 63.2
Lalb_Chr19g0125041 Lupinus albus HOM05D004212 ORTHO05D005128 1.8e-101 373.2 306 65.0
MSTRG.10244 Avicennia marina HOM05D004212 ORTHO05D005128 9.0e-101 370.9 306 64.4
MELO3C003185.2 Cucumis melo HOM05D004212 ORTHO05D005128 1.2e-100 370.5 322 61.5
CsaV3_4G025590 Cucumis sativus L. HOM05D004212 ORTHO05D005128 2.6e-100 369.4 322 61.2
Atru.chr8.2089 Acer truncatum HOM05D004212 ORTHO05D005128 1.0e-99 367.5 306 65.7
MD12G1154600 Malus domestica HOM05D004212 ORTHO05D005128 1.3e-99 367.1 321 63.9
Psat3g133560 Pisum sativum HOM05D004212 ORTHO05D005128 1.7e-99 366.7 305 63.6
TWI53G1663 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 1.7e-99 366.7 321 63.6
Ciclev10021036m.g Citrus clementina HOM05D004212 ORTHO05D005128 6.5e-99 364.8 306 67.6
TPR.G34923 Trifolium pratense HOM05D004212 ORTHO05D005128 8.5e-99 364.4 310 63.2
Phvul.006G149300 Phaseolus vulgaris HOM05D004212 ORTHO05D005128 1.9e-98 363.2 308 62.7
Oeu001834.1 Olea europaea HOM05D004212 ORTHO05D005128 3.2e-98 362.5 306 63.1
Glyma.09G059100 Glycine max HOM05D004212 ORTHO05D005128 2.1e-97 359.8 310 63.9
VMungo0540G1009 Vigna mungo HOM05D004212 ORTHO05D005128 3.6e-97 359.0 305 63.3
COL.COLO4_14697 Corchorus olitorius HOM05D004212 ORTHO05D005128 1.0e-96 357.5 306 64.1
TWI74G0733 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 1.0e-96 357.5 321 63.9
Glyma.15G165200 Glycine max HOM05D004212 ORTHO05D005128 1.4e-96 357.1 304 63.8
Peaxi162Scf00975g00132 Petunia axillaris HOM05D004212 ORTHO05D005128 2.3e-96 356.3 309 61.8
Solyc09g011450.4 Solanum lycopersicum HOM05D004212 ORTHO05D005128 3.0e-96 355.9 305 63.3
MD04G1138800 Malus domestica HOM05D004212 ORTHO05D005128 3.9e-96 355.5 311 63.3
Sopen09g006170 Solanum pennellii HOM05D004212 ORTHO05D005128 8.8e-96 354.4 305 62.3
Sed0021611 Sechium edule HOM05D004212 ORTHO05D005128 2.5e-95 352.8 315 60.3
arahy.Tifrunner.gnm1.ann1.PUF7HK Arachis hypogaea HOM05D004212 ORTHO05D005128 7.4e-95 351.3 307 62.2
arahy.Tifrunner.gnm1.ann1.59HWIF Arachis hypogaea HOM05D004212 ORTHO05D005128 1.3e-94 350.5 308 61.7
Sc22g0004390 Simmondsia chinensis HOM05D004212 ORTHO05D005128 2.8e-94 349.4 300 62.3
Lj1g0008590 Lotus japonicus HOM05D004212 ORTHO05D005128 4.8e-94 348.6 316 62.7
arahy.Tifrunner.gnm1.ann1.MS11WY Arachis hypogaea HOM05D004212 ORTHO05D005128 6.3e-94 348.2 307 61.9
Cc06_g02090 Coffea canephora HOM05D004212 ORTHO05D005128 6.3e-94 348.2 309 60.5
Aa31LG10G8930 Aethionema arabicum HOM05D004212 ORTHO05D005128 8.2e-94 347.8 305 65.2
arahy.Tifrunner.gnm1.ann1.77ZQ01 Arachis hypogaea HOM05D004212 ORTHO05D005128 8.2e-94 347.8 308 61.7
THA.LOC104806541 Tarenaya hassleriana HOM05D004212 ORTHO05D005128 8.2e-94 347.8 308 64.0
Hund00715 Selenicereus undatus HOM05D004212 ORTHO05D005128 1.8e-93 346.7 316 61.4
Nitab4.5_0008116g0030 Nicotiana tabacum HOM05D004212 ORTHO05D005128 6.9e-93 344.7 304 61.2
SalBow7G2619 Salvia bowleyana HOM05D004212 ORTHO05D005128 4.5e-92 342.0 304 59.9
Sabra16G0103700 Salix brachista HOM05D004212 ORTHO05D005128 6.5e-91 338.2 308 60.4
Ciclev10012365m.g Citrus clementina HOM05D004212 ORTHO05D005128 8.5e-91 337.8 304 61.8
Potri.016G103800 Populus trichocarpa HOM05D004212 ORTHO05D005128 8.5e-91 337.8 308 60.1
CSS0007767 Camellia sinensis var. sinensis HOM05D004212 ORTHO05D005128 4.2e-90 335.5 304 60.2
AT3G53970 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 9.4e-90 334.3 307 61.6
Medtr7g065120 Medicago truncatula HOM05D004212 ORTHO05D005128 2.1e-89 333.2 311 59.8
PGSC0003DMG400024265 Solanum tuberosum HOM05D004212 ORTHO05D005128 2.7e-89 332.8 322 58.1
QL07p028338 Quercus lobata HOM05D004212 ORTHO05D005128 3.6e-89 332.4 293 64.2
CARHR163870 Cardamine hirsuta HOM05D004212 ORTHO05D005128 6.1e-89 331.6 312 61.5
AL5G34970 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 1.8e-88 330.1 307 61.2
Nn2g11289 Nelumbo nucifera HOM05D004212 ORTHO05D005128 5.1e-88 328.6 309 58.6
Carub.0005s2056 Capsella rubella HOM05D004212 ORTHO05D005128 6.7e-88 328.2 313 61.7
unitig_62.g23469 Utricularia gibba HOM05D004212 ORTHO05D005128 1.1e-87 327.4 302 57.0
Duzib093G0395 Durio zibethinus HOM05D004212 ORTHO05D005128 1.5e-87 327.0 302 58.6
Lsat_1_v5_gn_8_84101 Lactuca sativa HOM05D004212 ORTHO05D005128 3.3e-87 325.9 311 56.3
PGR004G1844 Punica granatum HOM05D004212 ORTHO05D005128 1.3e-86 323.9 322 58.4
DCAR_028811 Daucus carota HOM05D004212 ORTHO05D005128 6.3e-86 321.6 305 56.4
ECA236G3305 Erigeron canadensis HOM05D004212 ORTHO05D005128 6.3e-86 321.6 304 55.9
Hma1.2p1_0671F.1_g200560 Hydrangea macrophylla HOM05D004212 ORTHO05D005128 3.1e-85 319.3 307 58.3
Migut.J00264 Erythranthe guttata HOM05D004212 ORTHO05D005128 5.3e-85 318.5 306 58.5
arahy.Tifrunner.gnm1.ann1.SP0BHI Arachis hypogaea HOM05D004212 ORTHO05D005128 1.6e-84 317.0 282 62.1
vmacro20195 Vaccinium macrocarpon HOM05D004212 ORTHO05D005128 3.5e-84 315.8 311 58.2
Dinv35542 Davidia involucrata HOM05D004212 ORTHO05D005128 1.3e-83 313.9 256 65.6
HanXRQChr04g0124481 Helianthus annuus HOM05D004212 ORTHO05D005128 2.2e-83 313.2 306 56.2
EL10Ac3g05638 Beta vulgaris HOM05D004212 ORTHO05D005128 1.5e-82 310.5 315 56.8
FvH4_4g10740 Fragaria vesca HOM05D004212 ORTHO05D005128 1.2e-81 307.4 246 68.3
AUR62021188 Chenopodium quinoa HOM05D004212 ORTHO05D005128 3.0e-80 302.8 315 57.1
Rhsim05G0199700 Rhododendron simsii HOM05D004212 ORTHO05D005128 1.3e-75 287.3 302 56.0
AUR62015980 Chenopodium quinoa HOM05D004212 ORTHO05D005128 2.2e-75 286.6 311 54.7
BcaB02g07758 Brassica carinata HOM05D004212 ORTHO05D005128 1.0e-72 277.7 313 57.2
Thhalv10010577m.g Eutrema salsugineum HOM05D004212 ORTHO05D005128 1.0e-72 277.7 321 54.2
FAN05G0076 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.8e-72 276.9 335 51.6
HPP92_005893 Vanilla planifolia HOM05D004212 ORTHO05D005128 1.8e-72 276.9 309 53.1
CDE02G2360 Ceratophyllum demersum HOM05D004212 ORTHO05D005128 2.2e-70 270.0 305 49.8
FvH4_6g12740 Fragaria vesca HOM05D004212 ORTHO05D005128 2.2e-70 270.0 320 53.1
FAN14G3630 Fragaria x ananassa HOM05D004212 ORTHO05D005128 4.8e-70 268.9 325 52.3
BraA07t29869Z Brassica rapa HOM05D004212 ORTHO05D005128 5.4e-69 265.4 312 56.7
BolC6t37364H Brassica oleracea HOM05D004212 ORTHO05D005128 9.1e-69 264.6 311 55.9
A07p21880 Brassica napus HOM05D004212 ORTHO05D005128 1.6e-68 263.8 312 56.4
BcaC08g44655 Brassica carinata HOM05D004212 ORTHO05D005128 2.7e-68 263.1 312 56.4
C06p21750 Brassica napus HOM05D004212 ORTHO05D005128 2.7e-68 263.1 312 56.4
Sp5g08430 Schrenkiella parvula HOM05D004212 ORTHO05D005128 1.7e-67 260.4 314 54.8
Oeu021128.1 Olea europaea HOM05D004212 ORTHO05D005128 2.2e-67 260.0 392 42.6
RcHm_v2.0_Chr3g0464661 Rosa chinensis HOM05D004212 ORTHO05D005128 2.2e-67 260.0 338 50.0
SGA_v2.0_scaffold673G53429 Striga asiatica HOM05D004212 ORTHO05D005128 1.6e-65 253.8 246 58.1
ATR1134G026 Amborella trichopoda HOM05D004212 ORTHO05D005128 4.0e-64 249.2 303 48.5
Aqoxy4G03223 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 4.0e-64 249.2 304 48.7
Actinidia29168 Actinidia chinensis HOM05D004212 ORTHO05D005128 1.2e-63 247.7 309 51.8
Aqoxy7G01126 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 1.5e-63 247.3 304 48.4
PSO384G5122 Papaver somniferum HOM05D004212 ORTHO05D005128 2.0e-63 246.9 313 48.6
PSO339G0401 Papaver somniferum HOM05D004212 ORTHO05D005128 5.7e-63 245.4 313 47.9
Lj2C86T9 Lonicera japonica HOM05D004212 ORTHO05D005128 9.8e-63 244.6 278 51.4
Zm00001eb323600 Zea mays HOM05D004212 ORTHO05D005128 5.4e-61 238.8 310 47.7
Mapoly0013s0005 Marchantia polymorpha HOM05D004212 ORTHO05D005128 6.6e-59 231.9 305 45.9
Nn2g13527 Nelumbo nucifera HOM05D004212 ORTHO05D005128 7.3e-58 228.4 263 51.3
Os07g0548900 Oryza sativa ssp. japonica HOM05D004212 ORTHO05D005128 1.7e-54 217.2 299 45.5
Pp3c12_26190 Physcomitrium patens HOM05D004212 ORTHO05D005128 8.6e-51 204.9 304 44.1
CAN.G697.3 Capsicum annuum HOM05D004212 ORTHO05D005128 3.4e-47 193.0 177 59.3
FAN09G1025 Fragaria x ananassa HOM05D004212 ORTHO05D005128 5.8e-47 192.2 144 66.7
Lj4g0027540 Lotus japonicus HOM05D004212 ORTHO05D005128 1.7e-46 190.7 290 48.3
RcHm_v2.0_Chr4g0419261 Rosa chinensis HOM05D004212 ORTHO05D005128 2.9e-46 189.9 225 55.6
Cfa009861 Carpinus fangiana HOM05D004212 ORTHO05D005128 2.4e-45 186.8 250 51.2
BraA09t40156Z Brassica rapa HOM05D004212 ORTHO05D005128 1.2e-44 184.5 320 44.4
BcaB01g00227 Brassica carinata HOM05D004212 ORTHO05D005128 1.0e-43 181.4 258 48.4
SMO115G0073 Selaginella moellendorffii HOM05D004212 ORTHO05D005128 1.7e-43 180.6 287 43.9
A09p46880 Brassica napus HOM05D004212 ORTHO05D005128 2.3e-43 180.3 300 45.0
CBR_g46706 Chara braunii HOM05D004212 ORTHO05D005128 7.3e-42 175.3 357 39.2
Carub.0003s2694 Capsella rubella HOM05D004212 ORTHO05D005128 3.7e-38 162.9 188 52.7
Prupe.6G304800 Prunus persica HOM05D004212 ORTHO05D005128 3.7e-38 162.9 148 58.8
Hma1.2p1_0097F.1_g048000 Hydrangea macrophylla HOM05D004212 ORTHO05D005128 1.0e-35 154.8 115 66.1
MD12G1200000 Malus domestica HOM05D004212 ORTHO05D005128 1.0e-35 154.8 216 49.5
AL3G43180 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 1.3e-35 154.5 184 50.5
BcaB02g08498 Brassica carinata HOM05D004212 ORTHO05D005128 1.3e-35 154.5 293 41.3
Lj3C960G5 Lonicera japonica HOM05D004212 ORTHO05D005128 1.5e-34 151.0 253 39.5
arahy.Tifrunner.gnm1.ann1.MGHR3Z Arachis hypogaea HOM05D004212 ORTHO05D005128 4.3e-34 149.4 115 63.5
AT1G48530 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 9.5e-34 148.3 163 52.8
AL3G43230 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 2.8e-33 146.7 184 49.5
MD17G1162600 Malus domestica HOM05D004212 ORTHO05D005128 3.6e-33 146.4 148 56.1
PSO104G0021 Papaver somniferum HOM05D004212 ORTHO05D005128 8.1e-33 145.2 159 50.9
CAN.G697.2 Capsicum annuum HOM05D004212 ORTHO05D005128 1.8e-32 144.1 110 68.2
PSO421G0231 Papaver somniferum HOM05D004212 ORTHO05D005128 3.1e-32 143.3 158 50.0
SEGI_17127 Sequoiadendron giganteum HOM05D004212 ORTHO05D005128 4.0e-32 142.9 107 68.2
Duzib106G0220 Durio zibethinus HOM05D004212 ORTHO05D005128 1.2e-31 141.4 107 65.4
C08p29190 Brassica napus HOM05D004212 ORTHO05D005128 3.4e-31 139.8 286 42.7
arahy.Tifrunner.gnm1.ann1.U24FMU Arachis hypogaea HOM05D004212 ORTHO05D005128 9.9e-31 138.3 103 67.0
BcaC07g39746 Brassica carinata HOM05D004212 ORTHO05D005128 9.9e-31 138.3 286 41.6
BolC8t50520H Brassica oleracea HOM05D004212 ORTHO05D005128 9.9e-31 138.3 286 42.3
SEGI_10222 Sequoiadendron giganteum HOM05D004212 ORTHO05D005128 1.3e-30 137.9 185 45.4
PSO104G0091 Papaver somniferum HOM05D004212 ORTHO05D005128 7.8e-28 128.6 173 46.2
PSO104G0005 Papaver somniferum HOM05D004212 ORTHO05D005128 1.0e-27 128.3 173 46.2
RcHm_v2.0_Chr4g0416021 Rosa chinensis HOM05D004212 ORTHO05D005128 1.7e-22 110.9 145 49.0
BolC6t39520H Brassica oleracea HOM05D004212 ORTHO05D005128 4.3e-18 96.3 103 53.4
FAN02G2124 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.4e-16 91.3 136 47.8
SGA_v2.0_scaffold96G28918 Striga asiatica HOM05D004212 ORTHO05D005128 1.5e-15 87.8 78 60.3
AagrBONN_evm.TU.Sc2ySwM_344.2315 Anthoceros agrestis HOM05D004212 ORTHO05D005128 4.5e-15 86.3 167 39.5
TAR633G2132 Trochodendron aralioides HOM05D004212 ORTHO05D005128 5.8e-15 85.9 269 29.4
BcaC02g09118 Brassica carinata HOM05D004212 ORTHO05D005128 1.0e-11 75.1 71 54.9
BcaC01g05774 Brassica carinata HOM05D004212 ORTHO05D005128 8.7e-11 72.0 55 61.8
Lalb_Chr18g0052541 Lupinus albus HOM05D004212 ORTHO05D005128 1.9e-10 70.9 56 60.7
Cre07.g331000 Chlamydomonas reinhardtii HOM05D004212 ORTHO05D005128 1.6e-09 67.8 175 29.7
DCAR_024051 Daucus carota HOM05D004212 ORTHO05D005128 2.6e-07 60.5 63 49.2
BcaC05g26039 Brassica carinata HOM05D004212 ORTHO05D032610 3.4e-07 60.1 69 52.2
C05p20210 Brassica napus HOM05D004212 ORTHO05D032610 3.4e-07 60.1 67 53.7
BolC5t30714H Brassica oleracea HOM05D004212 ORTHO05D032610 3.4e-07 60.1 67 53.7
CARHR164030 Cardamine hirsuta HOM05D004212 ORTHO05D005128 4.5e-07 59.7 57 54.4
TAR636G1337 Trochodendron aralioides HOM05D007866 ORTHO05D003871 2.9e-06 57.0 36 69.4
FAN07G2658 Fragaria x ananassa HOM05D004212 ORTHO05D005128 4.9e-06 56.2 38 73.7


User provided reference genes

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