Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa010164 Carpinus fangiana HOM05D005072 ORTHO05D006209 0.0e+00 1178.3 598 100.0
Haze_23549 Corylus avellana HOM05D005072 ORTHO05D006209 2.7e-306 1054.7 624 88.6
Dinv24604 Davidia involucrata HOM05D005072 ORTHO05D006209 1.9e-275 952.2 598 80.9
TWI79G0414 Tripterygium wilfordii HOM05D005072 ORTHO05D006209 5.0e-268 927.5 590 78.8
Hma1.2p1_1843F.1_g305080 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 1.5e-264 916.0 588 78.4
Ciclev10014694m.g Citrus clementina HOM05D005072 ORTHO05D006209 1.7e-260 902.5 596 77.2
Prupe.4G269200 Prunus persica HOM05D005072 ORTHO05D006209 2.2e-260 902.1 590 77.1
QL01p016041 Quercus lobata HOM05D005072 ORTHO05D006209 3.0e-257 891.7 789 62.7
Thecc.09G251600 Theobroma cacao HOM05D005072 ORTHO05D006209 1.5e-256 889.4 599 75.3
MD03G1163400 Malus domestica HOM05D005072 ORTHO05D006209 1.4e-254 882.9 601 74.7
TAR623G1264 Trochodendron aralioides HOM05D005072 ORTHO05D006209 9.1e-254 880.2 592 76.0
CiPaw.14G108700 Carya illinoinensis HOM05D005072 ORTHO05D006209 1.6e-253 879.4 520 84.6
Atru.chr3.2833 Acer truncatum HOM05D005072 ORTHO05D006209 8.6e-252 873.6 589 74.4
GSVIVG01037391001 Vitis vinifera HOM05D005072 ORTHO05D006209 4.4e-248 861.3 619 71.7
Gohir.D08G019500 Gossypium hirsutum HOM05D005072 ORTHO05D006209 3.2e-246 855.1 598 71.9
COL.COLO4_33262 Corchorus olitorius HOM05D005072 ORTHO05D006209 2.7e-245 852.0 598 71.4
Gorai.004G014000 Gossypium raimondii HOM05D005072 ORTHO05D006209 2.7e-245 852.0 598 71.4
Duzib170G0952 Durio zibethinus HOM05D005072 ORTHO05D006209 4.6e-245 851.3 598 72.1
Gohir.A08G009400 Gossypium hirsutum HOM05D005072 ORTHO05D006209 5.9e-245 850.9 598 71.4
vmacro14280 Vaccinium macrocarpon HOM05D005072 ORTHO05D006209 2.3e-244 849.0 590 72.2
Potri.009G022200 Populus trichocarpa HOM05D005072 ORTHO05D006209 8.6e-244 847.0 587 73.6
Ca_06178_v3 Cicer arietinum L. HOM05D005072 ORTHO05D006209 3.4e-240 835.1 598 69.9
RcHm_v2.0_Chr7g0190441 Rosa chinensis HOM05D005072 ORTHO05D006209 1.1e-238 830.1 602 71.1
Cpa.g.sc34.205 Carica papaya HOM05D005072 ORTHO05D006209 1.4e-238 829.7 591 71.9
PSO675G4775 Papaver somniferum HOM05D005072 ORTHO05D006209 2.7e-237 825.5 590 69.8
Aqoxy2G00052 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 1.7e-236 822.8 593 70.0
Manes.02G135100 Manihot esculenta HOM05D005072 ORTHO05D006209 6.6e-236 820.8 522 79.1
CANSAT54G0197 Cannabis sativa HOM05D005072 ORTHO05D006209 1.1e-235 820.1 590 70.5
Lalb_Chr10g0106071 Lupinus albus HOM05D005072 ORTHO05D006209 1.9e-235 819.3 594 69.7
FAN18G1184 Fragaria x ananassa HOM05D005072 ORTHO05D006209 1.2e-234 816.6 595 70.3
TPR.G16394 Trifolium pratense HOM05D005072 ORTHO05D006209 6.2e-234 814.3 598 69.1
PSO541G4749 Papaver somniferum HOM05D005072 ORTHO05D006209 2.3e-233 812.4 590 68.5
FvH4_5g07960 Fragaria vesca HOM05D005072 ORTHO05D006209 1.2e-232 810.1 595 69.7
Medtr5g088780 Medicago truncatula HOM05D005072 ORTHO05D006209 1.9e-230 802.7 595 67.6
SGA_v2.0_scaffold16G07591 Striga asiatica HOM05D005072 ORTHO05D006209 9.2e-230 800.4 607 67.7
PGR102G1516 Punica granatum HOM05D005072 ORTHO05D006209 2.7e-229 798.9 588 69.4
Eucgr.B03761 Eucalyptus grandis HOM05D005072 ORTHO05D006209 3.5e-229 798.5 594 68.2
Oeu032059.1 Olea europaea HOM05D005072 ORTHO05D006209 6.6e-228 794.3 594 69.2
Glyma.02G277200 Glycine max HOM05D005072 ORTHO05D006209 2.5e-227 792.3 594 67.8
Lj1C290G6 Lonicera japonica HOM05D005072 ORTHO05D006209 3.3e-227 792.0 598 68.7
FAN13G0840 Fragaria x ananassa HOM05D005072 ORTHO05D006209 4.3e-227 791.6 595 68.9
Glyma.14G038000 Glycine max HOM05D005072 ORTHO05D006209 7.3e-227 790.8 596 67.6
Cc01_g07180 Coffea canephora HOM05D005072 ORTHO05D006209 2.1e-226 789.3 605 67.4
Migut.N02404 Erythranthe guttata HOM05D005072 ORTHO05D006209 2.1e-226 789.3 595 68.7
FAN04G1678 Fragaria x ananassa HOM05D005072 ORTHO05D006209 2.1e-226 789.3 595 68.6
CAN.G651.4 Capsicum annuum HOM05D005072 ORTHO05D006209 6.2e-226 787.7 600 68.0
ClCG02G022550 Citrullus lanatus HOM05D005072 ORTHO05D006209 8.1e-226 787.3 608 66.8
HanXRQChr05g0144311 Helianthus annuus HOM05D005072 ORTHO05D006209 3.1e-225 785.4 587 67.1
Psat0s680g0080 Pisum sativum HOM05D005072 ORTHO05D006209 2.6e-224 782.3 598 65.9
Sopen01g004520 Solanum pennellii HOM05D005072 ORTHO05D006209 5.8e-224 781.2 591 67.9
FAN08G0571 Fragaria x ananassa HOM05D005072 ORTHO05D006209 7.6e-224 780.8 595 68.1
CSS0034993 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 9.9e-224 780.4 588 69.6
Solyc01g009030.4 Solanum lycopersicum HOM05D005072 ORTHO05D006209 6.4e-223 777.7 599 67.1
arahy.Tifrunner.gnm1.ann1.BCWF2K Arachis hypogaea HOM05D005072 ORTHO05D006209 3.2e-222 775.4 584 66.3
ECA238G1118 Erigeron canadensis HOM05D005072 ORTHO05D006209 3.2e-222 775.4 596 66.4
MSTRG.12421 Avicennia marina HOM05D005072 ORTHO05D006209 1.2e-221 773.5 605 66.6
CsaV3_6G038680 Cucumis sativus L. HOM05D005072 ORTHO05D006209 2.1e-221 772.7 605 66.0
Nitab4.5_0002300g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 7.8e-221 770.8 606 65.8
Phvul.008G203700 Phaseolus vulgaris HOM05D005072 ORTHO05D006209 1.0e-220 770.4 599 65.8
Hund21956 Selenicereus undatus HOM05D005072 ORTHO05D006209 1.7e-220 769.6 591 65.1
MELO3C014531.2 Cucumis melo HOM05D005072 ORTHO05D006209 3.9e-220 768.5 605 65.5
CARHR200820 Cardamine hirsuta HOM05D005072 ORTHO05D006209 5.6e-219 764.6 583 65.2
DCAR_023860 Daucus carota HOM05D005072 ORTHO05D006209 7.3e-219 764.2 516 72.3
THA.LOC104799144 Tarenaya hassleriana HOM05D005072 ORTHO05D006209 1.4e-217 760.0 603 63.8
A02p01460 Brassica napus HOM05D005072 ORTHO05D006209 3.1e-217 758.8 592 63.9
MBI13_g20755_MAGBIO Magnolia biondii HOM05D005072 ORTHO05D006209 3.1e-217 758.8 649 62.6
arahy.Tifrunner.gnm1.ann1.2SU3A5 Arachis hypogaea HOM05D005072 ORTHO05D006209 4.0e-217 758.4 616 62.7
C02p05680 Brassica napus HOM05D005072 ORTHO05D006209 1.5e-216 756.5 592 63.7
LjContig00564g0010958 Lotus japonicus HOM05D005072 ORTHO05D006209 2.6e-216 755.7 599 65.9
BraA02t05125Z Brassica rapa HOM05D005072 ORTHO05D006209 4.4e-216 755.0 600 63.0
Sp6g31350 Schrenkiella parvula HOM05D005072 ORTHO05D006209 4.4e-216 755.0 583 64.7
AL6G23090 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 7.6e-216 754.2 586 64.2
BolC2t06512H Brassica oleracea HOM05D005072 ORTHO05D006209 2.2e-215 752.7 600 62.8
Carub.0006s1080 Capsella rubella HOM05D005072 ORTHO05D006209 4.9e-215 751.5 586 63.8
Thhalv10013024m.g Eutrema salsugineum HOM05D005072 ORTHO05D006209 1.6e-213 746.5 592 63.0
Aa31LG3G14940 Aethionema arabicum HOM05D005072 ORTHO05D006209 4.6e-213 745.0 605 62.6
EL10Ac4g10071 Beta vulgaris HOM05D005072 ORTHO05D006209 1.9e-211 739.6 589 64.2
Nitab4.5_0000428g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 1.9e-211 739.6 586 65.5
A03p05510 Brassica napus HOM05D005072 ORTHO05D006209 1.3e-210 736.9 577 63.8
Lsat_1_v5_gn_2_36161 Lactuca sativa HOM05D005072 ORTHO05D006209 1.4e-209 733.4 577 65.7
C03p06430 Brassica napus HOM05D005072 ORTHO05D006209 1.9e-206 723.0 575 63.1
BolC3t13149H Brassica oleracea HOM05D005072 ORTHO05D006209 9.3e-206 720.7 576 62.8
CSS0024863 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 1.4e-201 706.8 549 68.1
BraA03t09889Z Brassica rapa HOM05D005072 ORTHO05D006209 2.0e-200 703.0 524 65.5
Sed0004908 Sechium edule HOM05D005072 ORTHO05D006209 2.7e-197 692.6 562 63.3
Peaxi162Scf00050g02225 Petunia axillaris HOM05D005072 ORTHO05D006209 6.0e-197 691.4 580 62.4
Ah.04g159570 Amaranthus hybridus HOM05D005072 ORTHO05D006209 2.6e-192 676.0 594 59.1
SalBow3G4478 Salvia bowleyana HOM05D005072 ORTHO05D006209 3.4e-192 675.6 609 59.8
AUR62006578 Chenopodium quinoa HOM05D005072 ORTHO05D006209 9.3e-190 667.5 589 57.7
Sc06g0004780 Simmondsia chinensis HOM05D005072 ORTHO05D006209 1.4e-185 653.7 489 67.3
AT5G12290 Arabidopsis thaliana HOM05D005072 ORTHO05D006209 2.4e-185 652.9 512 64.5
AUR62000232 Chenopodium quinoa HOM05D005072 ORTHO05D006209 5.3e-185 651.7 614 56.0
BcaB01g05412 Brassica carinata HOM05D005072 ORTHO05D006209 2.2e-183 646.4 595 56.6
ATR0307G105 Amborella trichopoda HOM05D005072 ORTHO05D006209 1.5e-168 597.0 469 65.9
Actinidia38495 Actinidia chinensis HOM05D005072 ORTHO05D006209 1.8e-164 583.6 356 80.6
Zm00001eb017230 Zea mays HOM05D005072 ORTHO05D006209 1.3e-162 577.4 577 51.5
unitig_27.g25017 Utricularia gibba HOM05D005072 ORTHO05D006209 5.9e-152 542.0 612 51.1
Duzib168G1271 Durio zibethinus HOM05D005072 ORTHO05D006209 1.8e-140 503.8 383 65.0
Os03g0377500 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 1.4e-124 451.1 447 52.1
SMO147G0386 Selaginella moellendorffii HOM05D005072 ORTHO05D006209 1.1e-121 441.4 508 45.3
Pp3c22_1870 Physcomitrium patens HOM05D005072 ORTHO05D006209 5.4e-121 439.1 549 45.0
HPP92_015601 Vanilla planifolia HOM05D005072 ORTHO05D006209 5.6e-118 429.1 304 70.7
Lj1C297T8 Lonicera japonica HOM05D005072 ORTHO05D006209 6.8e-116 422.2 335 64.8
Mapoly0034s0093 Marchantia polymorpha HOM05D005072 ORTHO05D006209 1.2e-115 421.4 562 43.2
Pp3c3_6740 Physcomitrium patens HOM05D005072 ORTHO05D006209 1.1e-113 414.8 552 42.2
Actinidia29952 Actinidia chinensis HOM05D005072 ORTHO05D006209 3.1e-108 396.7 276 73.6
Nn7g36972 Nelumbo nucifera HOM05D005072 ORTHO05D006209 4.0e-92 343.2 404 48.0
Aqoxy279s001 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 5.8e-91 339.3 287 61.3
CDE07G0611 Ceratophyllum demersum HOM05D005072 ORTHO05D006209 2.7e-88 330.5 216 76.4
Glyma.14G037400 Glycine max HOM05D005072 ORTHO05D006209 9.9e-83 312.0 216 74.5
CBR_g51661 Chara braunii HOM05D005072 ORTHO05D006209 1.3e-74 285.0 583 31.2
Os03g0377300 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 9.3e-73 278.9 316 43.7
PGSC0003DMG403022702 Solanum tuberosum HOM05D005072 ORTHO05D006209 3.0e-71 273.9 181 76.8
AagrBONN_evm.TU.Sc2ySwM_117.924 Anthoceros agrestis HOM05D005072 ORTHO05D006209 1.9e-70 271.2 363 38.6
Actinidia27132 Actinidia chinensis HOM05D005072 ORTHO05D006209 4.5e-67 260.0 172 76.7
Lj1A297G59 Lonicera japonica HOM05D005072 ORTHO05D006209 4.4e-46 190.3 112 79.5
SEGI_25760 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 1.9e-41 174.9 123 65.9
SEGI_30846 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 4.8e-37 160.2 122 68.9
Hma1.2p1_2592F.1_g325060 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 2.0e-35 154.8 152 58.6
Hma1.2p1_2592F.1_g325070 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 3.2e-33 147.5 112 67.9
ECA233G6112 Erigeron canadensis HOM05D005072 ORTHO05D006209 1.5e-30 138.7 269 37.9
AL340U10010 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 3.5e-27 127.5 98 55.1
Nn001s41348 Nelumbo nucifera HOM05D005072 ORTHO05D006209 2.3e-26 124.8 75 78.7
Lsat_1_v5_gn_4_59101 Lactuca sativa HOM05D005072 ORTHO05D006209 3.8e-26 124.0 102 59.8
Os03g0356470 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 3.8e-26 124.0 176 40.3
Cre14.g610351 Chlamydomonas reinhardtii HOM05D005072 ORTHO05D006209 2.5e-25 121.3 380 28.4
SEGI_31829 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 5.5e-25 120.2 129 48.8
Lsat_1_v5_gn_5_119240 Lactuca sativa HOM05D005072 ORTHO05D006209 3.6e-24 117.5 128 48.4
MCO07G292 Micromonas commoda HOM05D005072 ORTHO05D006209 1.4e-23 115.5 568 22.4
VMungo1245G0001 Vigna mungo HOM05D005072 ORTHO05D006209 2.4e-20 104.8 84 61.9
VMungo1127G1498 Vigna mungo HOM05D005072 ORTHO05D006209 5.4e-20 103.6 82 61.0
VMungo1215G1729 Vigna mungo HOM05D005072 ORTHO05D006209 5.4e-20 103.6 79 63.3
Oeu032057.1 Olea europaea HOM05D005072 ORTHO05D006209 6.6e-18 96.7 173 39.3
ECA248G3958 Erigeron canadensis HOM05D005072 ORTHO05D006209 8.0e-16 89.7 106 46.2
Lsat_1_v5_gn_8_119321 Lactuca sativa HOM05D005072 ORTHO05D006209 1.5e-14 85.5 61 62.3
arahy.Tifrunner.gnm1.ann1.ELE64U Arachis hypogaea HOM05D005072 ORTHO05D006209 2.0e-14 85.1 228 29.4
CiPaw.14G108200 Carya illinoinensis HOM05D005072 ORTHO05D006209 2.0e-14 85.1 76 63.2
Lsat_1_v5_gn_4_56401 Lactuca sativa HOM05D005072 ORTHO05D006209 1.3e-13 82.4 54 68.5
arahy.Tifrunner.gnm1.ann1.N4LM1Q Arachis hypogaea HOM05D005072 ORTHO05D007788 2.4e-12 78.2 58 69.0
Cfa026272 Carpinus fangiana HOM05D005072 ORTHO05D126095 1.3e-10 72.4 243 27.6
Glyma.09G128251 Glycine max HOM05D005072 ORTHO05D006209 8.6e-10 69.7 82 50.0
SMO025G0001 Selaginella moellendorffii HOM05D012532 ORTHO05D006209 5.6e-09 67.0 137 34.3
Lsat_1_v5_gn_2_76440 Lactuca sativa HOM05D000807 ORTHO05D000662 1.1e-07 62.8 35 77.1
arahy.Tifrunner.gnm1.ann1.BVT45G Arachis hypogaea HOM05D005549 ORTHO05D006771 3.4e-06 57.8 47 55.3


User provided reference genes

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