Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa010162 Carpinus fangiana HOM05D009680 ORTHO05D000653 2.1e-57 225.3 104 100.0
Cfa005539 Carpinus fangiana HOM05D001004 ORTHO05D000653 1.6e-33 146.0 104 61.5
COL.COLO4_35913 Corchorus olitorius HOM05D001004 ORTHO05D000653 1.0e-27 126.7 89 58.4
Duzib114G0002 Durio zibethinus HOM05D001004 ORTHO05D000653 3.0e-27 125.2 86 58.1
Gorai.009G297300 Gossypium raimondii HOM05D001004 ORTHO05D000653 4.8e-25 117.9 86 53.5
COL.COLO4_20741 Corchorus olitorius HOM05D001004 ORTHO05D000653 8.2e-25 117.1 89 55.1
Gohir.A05G281700 Gossypium hirsutum HOM05D001004 ORTHO05D000653 1.1e-24 116.7 86 52.3
Gohir.A05G281800 Gossypium hirsutum HOM05D001004 ORTHO05D000653 1.8e-24 115.9 86 52.3
Gohir.D05G283088 Gossypium hirsutum HOM05D001004 ORTHO05D000653 2.4e-24 115.5 86 51.2
Gorai.009G297200 Gossypium raimondii HOM05D001004 ORTHO05D000653 2.4e-24 115.5 86 51.2
Gorai.009G297400 Gossypium raimondii HOM05D001004 ORTHO05D000653 2.4e-24 115.5 86 51.2
MD15G1392900 Malus domestica HOM05D001004 ORTHO05D000653 5.0e-22 107.8 87 51.7
Migut.L00816 Erythranthe guttata HOM05D001004 ORTHO05D000653 3.3e-18 95.1 85 51.8
Gohir.A05G281850 Gossypium hirsutum HOM05D001004 ORTHO05D000653 3.3e-18 95.1 78 48.7
Migut.H02350 Erythranthe guttata HOM05D009680 ORTHO05D000653 5.7e-18 94.4 91 48.4
Oeu017850.1 Olea europaea HOM05D001004 ORTHO05D000653 9.7e-18 93.6 84 47.6
TAR376G0093 Trochodendron aralioides HOM05D001004 ORTHO05D000653 1.3e-17 93.2 88 44.3
Oeu017833.1 Olea europaea HOM05D001004 ORTHO05D000653 2.2e-17 92.4 84 46.4
Oeu017841.1 Olea europaea HOM05D001004 ORTHO05D000653 3.7e-17 91.7 84 45.2
Thhalv10011055m.g Eutrema salsugineum HOM05D001004 ORTHO05D000653 8.2e-17 90.5 83 44.6
ClCG02G012910 Citrullus lanatus HOM05D001004 ORTHO05D000653 1.1e-16 90.1 85 47.1
Haze_10651 Corylus avellana HOM05D001004 ORTHO05D000653 1.1e-16 90.1 61 62.3
MELO3C000685.2 Cucumis melo HOM05D001004 ORTHO05D000653 1.1e-16 90.1 84 42.9
BolC3t14835H Brassica oleracea HOM05D001004 ORTHO05D000653 1.8e-16 89.4 83 47.0
Oeu017848.1 Olea europaea HOM05D001004 ORTHO05D000653 1.8e-16 89.4 84 45.2
Migut.B00982 Erythranthe guttata HOM05D009680 ORTHO05D000653 3.1e-16 88.6 89 46.1
AT3G46860 Arabidopsis thaliana HOM05D001004 ORTHO05D000653 6.9e-16 87.4 83 45.8
Oeu030752.1 Olea europaea HOM05D008628 ORTHO05D000653 1.2e-15 86.7 84 42.9
Eucgr.H05147 Eucalyptus grandis HOM05D001004 ORTHO05D000653 1.5e-15 86.3 84 48.8
Carub.0003s2826 Capsella rubella HOM05D001004 ORTHO05D000653 2.0e-15 85.9 83 42.2
Eucgr.F00211 Eucalyptus grandis HOM05D001004 ORTHO05D000653 2.0e-15 85.9 78 52.6
Migut.C00655 Erythranthe guttata HOM05D009680 ORTHO05D000653 2.6e-15 85.5 91 41.8
TAR376G1036 Trochodendron aralioides HOM05D001004 ORTHO05D000653 2.6e-15 85.5 83 42.2
Migut.C00659 Erythranthe guttata HOM05D001004 ORTHO05D000653 3.4e-15 85.1 87 42.5
Migut.C00658 Erythranthe guttata HOM05D001004 ORTHO05D000653 1.3e-14 83.2 90 42.2
MELO3C034586.2 Cucumis melo HOM05D001004 ORTHO05D000653 1.7e-14 82.8 83 41.0
Oeu017852.1 Olea europaea HOM05D001004 ORTHO05D000653 1.7e-14 82.8 85 43.5
Eucgr.C02276 Eucalyptus grandis HOM05D001004 ORTHO05D000653 3.8e-14 81.6 85 45.9
CARHR155430 Cardamine hirsuta HOM05D001004 ORTHO05D000653 5.0e-14 81.3 85 40.0
Eucgr.B01872 Eucalyptus grandis HOM05D001004 ORTHO05D000653 5.0e-14 81.3 88 47.7
Eucgr.D01653 Eucalyptus grandis HOM05D001004 ORTHO05D000653 1.4e-13 79.7 83 47.0
Eucgr.F04168 Eucalyptus grandis HOM05D001004 ORTHO05D000653 2.5e-13 79.0 88 43.2
Migut.F00732 Erythranthe guttata HOM05D001004 ORTHO05D000653 3.2e-13 78.6 82 46.3
Actinidia05828 Actinidia chinensis HOM05D008628 ORTHO05D010443 5.5e-13 77.8 96 46.9
Cc07_g18340 Coffea canephora HOM05D001004 ORTHO05D000653 1.2e-12 76.6 85 42.4
Thhalv10011127m.g Eutrema salsugineum HOM05D001004 ORTHO05D000653 1.2e-12 76.6 68 45.6
SGA_v2.0_scaffold14G07008 Striga asiatica HOM05D000760 ORTHO05D000618 1.6e-12 76.3 74 47.3
Eucgr.B01966 Eucalyptus grandis HOM05D001004 ORTHO05D000653 2.1e-12 75.9 88 45.5
CAN.G630.2 Capsicum annuum HOM05D009680 ORTHO05D000653 3.6e-12 75.1 86 43.0
Nitab4.5_0009740g0010 Nicotiana tabacum HOM05D008628 ORTHO05D010443 3.6e-12 75.1 88 45.5
Haze_01631 Corylus avellana HOM05D001004 ORTHO05D000653 4.6e-12 74.7 97 40.2
Peaxi162Scf00690g00221 Petunia axillaris HOM05D009680 ORTHO05D010443 4.6e-12 74.7 85 42.4
Peaxi162Scf01517g00130 Petunia axillaris HOM05D009680 ORTHO05D010443 4.6e-12 74.7 87 43.7
RcHm_v2.0_Chr6g0294471 Rosa chinensis HOM05D001004 ORTHO05D000653 4.6e-12 74.7 85 43.5
Nitab4.5_0000014g0490 Nicotiana tabacum HOM05D009680 ORTHO05D010443 6.1e-12 74.3 84 41.7
Nitab4.5_0000881g0060 Nicotiana tabacum HOM05D008628 ORTHO05D010443 6.1e-12 74.3 88 45.5
Peaxi162Scf00620g00517 Petunia axillaris HOM05D009680 ORTHO05D010443 1.8e-11 72.8 86 43.0
Peaxi162Scf00897g00013 Petunia axillaris HOM05D008628 ORTHO05D010443 1.8e-11 72.8 88 43.2
Sopen11g002970 Solanum pennellii HOM05D009680 ORTHO05D000653 1.8e-11 72.8 84 44.0
CAN.G1513.6 Capsicum annuum HOM05D009680 ORTHO05D010443 3.0e-11 72.0 85 43.5
Nitab4.5_0006484g0030 Nicotiana tabacum HOM05D009680 ORTHO05D000653 3.0e-11 72.0 89 39.3
CARHR155530 Cardamine hirsuta HOM05D009680 ORTHO05D000653 3.9e-11 71.6 67 43.3
Solyc11g007050.1 Solanum lycopersicum HOM05D009680 ORTHO05D000653 6.7e-11 70.9 84 44.0
Hma1.2p1_2755F.1_g327950 Hydrangea macrophylla HOM05D008628 ORTHO05D010443 8.8e-11 70.5 89 42.7
Nn1g09270 Nelumbo nucifera HOM05D008628 ORTHO05D000653 8.8e-11 70.5 83 39.8
Eucgr.F00210 Eucalyptus grandis HOM05D001004 ORTHO05D000653 1.1e-10 70.1 69 43.5
PGSC0003DMG400005142 Solanum tuberosum HOM05D009680 ORTHO05D010443 1.5e-10 69.7 85 42.4
Peaxi162Scf00620g00054 Petunia axillaris HOM05D009680 ORTHO05D010443 2.5e-10 68.9 86 38.4
AUR62006912 Chenopodium quinoa HOM05D001004 ORTHO05D000653 3.3e-10 68.6 77 37.7
Eucgr.I00166 Eucalyptus grandis HOM05D001004 ORTHO05D000653 3.3e-10 68.6 64 48.4
Oeu032586.1 Olea europaea HOM05D001004 ORTHO05D000653 3.3e-10 68.6 64 43.8
Eucgr.I00167 Eucalyptus grandis HOM05D001004 ORTHO05D000653 4.3e-10 68.2 64 48.4
Aqoxy117s001 Aquilegia oxysepala HOM05D001004 ORTHO05D000653 5.7e-10 67.8 88 42.0
Aqoxy3G01749 Aquilegia oxysepala HOM05D001004 ORTHO05D000653 5.7e-10 67.8 88 42.0
FAN28G2625 Fragaria x ananassa HOM05D001004 ORTHO05D000653 7.4e-10 67.4 85 40.0
PGSC0003DMG400034659 Solanum tuberosum HOM05D009680 ORTHO05D010443 9.7e-10 67.0 92 37.0
Oeu002604.1 Olea europaea HOM05D001004 ORTHO05D000653 1.7e-09 66.2 64 43.8
AUR62006914 Chenopodium quinoa HOM05D008628 ORTHO05D010443 2.2e-09 65.9 72 41.7
RcHm_v2.0_Chr2g0105871 Rosa chinensis HOM05D001004 ORTHO05D000653 2.2e-09 65.9 87 41.4
MELO3C020883.2 Cucumis melo HOM05D001004 ORTHO05D000653 3.7e-09 65.1 63 47.6
Migut.D01298 Erythranthe guttata HOM05D009680 ORTHO05D000653 3.7e-09 65.1 86 43.0
PGSC0003DMG400026952 Solanum tuberosum HOM05D009680 ORTHO05D010443 4.8e-09 64.7 91 37.4
Migut.A00979 Erythranthe guttata HOM05D001004 ORTHO05D000653 6.3e-09 64.3 64 43.8
Nitab4.5_0000302g0080 Nicotiana tabacum HOM05D001004 ORTHO05D000653 6.3e-09 64.3 64 43.8
Dinv43524 Davidia involucrata HOM05D004910 ORTHO05D006864 8.2e-09 63.9 68 48.5
Peaxi162Scf00897g00113 Petunia axillaris HOM05D000048 ORTHO05D000207 8.2e-09 63.9 65 47.7
Peaxi162Scf79264g00001 Petunia axillaris HOM05D008628 ORTHO05D010443 8.2e-09 63.9 65 47.7
PSO170G3861 Papaver somniferum HOM05D001004 ORTHO05D000653 1.1e-08 63.5 85 36.5
PSO832G2150 Papaver somniferum HOM05D001004 ORTHO05D000653 1.8e-08 62.8 86 39.5
CsaV3_1G045190 Cucumis sativus L. HOM05D001004 ORTHO05D000653 2.4e-08 62.4 57 43.9
Nn3g18475 Nelumbo nucifera HOM05D001004 ORTHO05D000653 2.4e-08 62.4 64 46.9
CsaV3_2G017000 Cucumis sativus L. HOM05D001004 ORTHO05D000653 3.1e-08 62.0 66 40.9
Migut.A00975 Erythranthe guttata HOM05D001004 ORTHO05D000653 4.1e-08 61.6 64 43.8
FvH4_1g16190 Fragaria vesca HOM05D001004 ORTHO05D000653 5.3e-08 61.2 87 39.1
PGSC0003DMG400026953 Solanum tuberosum HOM05D009680 ORTHO05D010443 5.3e-08 61.2 86 38.4
CAN.G630.1 Capsicum annuum HOM05D009680 ORTHO05D010443 6.9e-08 60.8 86 34.9
FAN26G2526 Fragaria x ananassa HOM05D001004 ORTHO05D000653 6.9e-08 60.8 87 39.1
PGR102G1734 Punica granatum HOM05D001004 ORTHO05D000653 9.1e-08 60.5 85 34.1
CAN.G630.4 Capsicum annuum HOM05D009680 ORTHO05D010443 1.2e-07 60.1 85 35.3
CiPaw.01G189700 Carya illinoinensis HOM05D001004 ORTHO05D000653 1.2e-07 60.1 64 43.8
Eucgr.H05126 Eucalyptus grandis HOM05D001004 ORTHO05D000653 1.2e-07 60.1 65 41.5
A05p31090 Brassica napus HOM05D001004 ORTHO05D000653 1.5e-07 59.7 60 48.3
BraA05t21950Z Brassica rapa HOM05D001004 ORTHO05D000653 1.5e-07 59.7 60 48.3
Migut.A00977 Erythranthe guttata HOM05D001004 ORTHO05D000653 1.5e-07 59.7 64 39.1
Eucgr.H05137 Eucalyptus grandis HOM05D001004 ORTHO05D000653 1.5e-07 59.7 65 40.0
TPR.G31261 Trifolium pratense HOM05D001004 ORTHO05D000653 1.5e-07 59.7 64 43.8
Eucgr.H02107 Eucalyptus grandis HOM05D001004 ORTHO05D000653 2.0e-07 59.3 65 41.5
MD13G1208300 Malus domestica HOM05D001004 ORTHO05D000653 2.0e-07 59.3 64 40.6
Dinv43966 Davidia involucrata HOM05D008628 ORTHO05D010443 2.6e-07 58.9 66 45.5
CARHR176870 Cardamine hirsuta HOM05D008628 ORTHO05D010443 3.4e-07 58.5 88 38.6
Migut.A00978 Erythranthe guttata HOM05D001004 ORTHO05D000653 3.4e-07 58.5 64 39.1
Migut.L00983 Erythranthe guttata HOM05D001004 ORTHO05D000653 3.4e-07 58.5 64 50.0
CAN.G630.3 Capsicum annuum HOM05D009680 ORTHO05D010443 4.5e-07 58.2 86 34.9
CiPaw.01G189600 Carya illinoinensis HOM05D001004 ORTHO05D000653 4.5e-07 58.2 64 42.2
AUR62006913 Chenopodium quinoa HOM05D001004 ORTHO05D000653 4.5e-07 58.2 86 31.4
FAN12G2763 Fragaria x ananassa HOM05D001004 ORTHO05D000653 4.5e-07 58.2 67 37.3
Medtr1g075340 Medicago truncatula HOM05D001004 ORTHO05D000653 4.5e-07 58.2 64 42.2
Haze_10653 Corylus avellana HOM05D001004 ORTHO05D165179 5.9e-07 57.8 39 61.5
Medtr1g075410 Medicago truncatula HOM05D001004 ORTHO05D000653 5.9e-07 57.8 64 40.6
Nn4g26614 Nelumbo nucifera HOM05D008628 ORTHO05D010443 7.7e-07 57.4 86 37.2
TAR636G3448 Trochodendron aralioides HOM05D001004 ORTHO05D000653 7.7e-07 57.4 64 40.6
Nitab4.5_0006346g0020 Nicotiana tabacum HOM05D001004 ORTHO05D000653 1.0e-06 57.0 64 40.6
COL.COLO4_12159 Corchorus olitorius HOM05D001004 ORTHO05D000653 1.3e-06 56.6 64 42.2
RcHm_v2.0_Chr4g0390831 Rosa chinensis HOM05D001004 ORTHO05D000653 1.3e-06 56.6 64 40.6
Cc03_g04970 Coffea canephora HOM05D001004 ORTHO05D000653 1.7e-06 56.2 64 40.6
Haze_19482 Corylus avellana HOM05D001004 ORTHO05D000653 1.7e-06 56.2 64 39.1
Lalb_Chr21g0312251 Lupinus albus HOM05D001004 ORTHO05D000653 1.7e-06 56.2 64 39.1
Medtr5g090250 Medicago truncatula HOM05D001004 ORTHO05D000653 1.7e-06 56.2 64 40.6
Prupe.1G032100 Prunus persica HOM05D001004 ORTHO05D000653 1.7e-06 56.2 95 34.7
PGR102G1398 Punica granatum HOM05D001004 ORTHO05D000653 2.2e-06 55.8 85 34.1
Atru.chr4.2206 Acer truncatum HOM05D001004 ORTHO05D000653 2.9e-06 55.5 66 37.9
Migut.A00976 Erythranthe guttata HOM05D001004 ORTHO05D000653 2.9e-06 55.5 64 40.6
Hma1.2p1_0310F.1_g120940 Hydrangea macrophylla HOM05D001004 ORTHO05D000653 2.9e-06 55.5 64 39.1
ClCG09G008110 Citrullus lanatus HOM05D001004 ORTHO05D000653 3.8e-06 55.1 64 37.5
FvH4_4g02860 Fragaria vesca HOM05D001004 ORTHO05D000653 3.8e-06 55.1 67 35.8
Glyma.10G184700 Glycine max HOM05D001004 ORTHO05D000653 3.8e-06 55.1 64 39.1
Lsat_1_v5_gn_0_14240 Lactuca sativa HOM05D001004 ORTHO05D000653 3.8e-06 55.1 87 34.5
Lj5g0010722 Lotus japonicus HOM05D001004 ORTHO05D000653 3.8e-06 55.1 64 37.5
Peaxi162Scf00325g00711 Petunia axillaris HOM05D001004 ORTHO05D000653 3.8e-06 55.1 64 37.5
Dinv44644 Davidia involucrata HOM05D001004 ORTHO05D000653 5.0e-06 54.7 64 37.5
Glyma.20G205900 Glycine max HOM05D001004 ORTHO05D000653 5.0e-06 54.7 64 40.6
CSS0013364 Camellia sinensis var. sinensis HOM05D001004 ORTHO05D000653 6.5e-06 54.3 70 37.1
Carub.0005s1637 Capsella rubella HOM05D008628 ORTHO05D010443 6.5e-06 54.3 86 36.0
AUR62000561 Chenopodium quinoa HOM05D001004 ORTHO05D000653 6.5e-06 54.3 41 46.3
CsaV3_5G013330 Cucumis sativus L. HOM05D001004 ORTHO05D000653 6.5e-06 54.3 70 42.9
Gohir.D11G134200 Gossypium hirsutum HOM05D001004 ORTHO05D000653 6.5e-06 54.3 64 40.6
Gorai.007G143500 Gossypium raimondii HOM05D001004 ORTHO05D000653 6.5e-06 54.3 64 40.6
Thecc.10G077500 Theobroma cacao HOM05D001004 ORTHO05D000653 6.5e-06 54.3 64 40.6
Thecc.10G078200 Theobroma cacao HOM05D001004 ORTHO05D000653 6.5e-06 54.3 64 39.1
Thecc.10G155400 Theobroma cacao HOM05D000011 ORTHO05D000157 6.5e-06 54.3 45 51.1
AL8G13560 Arabidopsis lyrata HOM05D008628 ORTHO05D010443 8.5e-06 53.9 74 37.8
CsaV3_3G012540 Cucumis sativus L. HOM05D001004 ORTHO05D000653 8.5e-06 53.9 64 37.5
Hma1.2p1_0650F.1_g195520 Hydrangea macrophylla HOM05D001004 ORTHO05D000653 8.5e-06 53.9 62 37.1
Lsat_1_v5_gn_1_35961 Lactuca sativa HOM05D001004 ORTHO05D000653 8.5e-06 53.9 87 35.6
Manes.05G086328 Manihot esculenta HOM05D001004 ORTHO05D000653 8.5e-06 53.9 64 37.5
Nn3g18474 Nelumbo nucifera HOM05D001004 ORTHO05D000653 8.5e-06 53.9 64 39.1
Sabra10G0033600 Salix brachista HOM05D001004 ORTHO05D000653 8.5e-06 53.9 64 39.1


User provided reference genes

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