Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa010136 Carpinus fangiana HOM05D001921 ORTHO05D001784 2.5e-30 134.8 70 100.0
Haze_01021 Corylus avellana HOM05D001921 ORTHO05D001784 9.4e-25 116.3 70 88.6
Cfa015526 Carpinus fangiana HOM05D001921 ORTHO05D001784 2.7e-24 114.8 68 88.2
Cfa017851 Carpinus fangiana HOM05D001921 ORTHO05D001784 2.7e-24 114.8 70 82.9
CiPaw.02G088800 Carya illinoinensis HOM05D001921 ORTHO05D001784 1.2e-19 99.4 70 77.1
QL06p006408 Quercus lobata HOM05D001921 ORTHO05D001784 1.0e-18 96.3 76 69.7
ClCG06G005610 Citrullus lanatus HOM05D001921 ORTHO05D001784 1.3e-18 95.9 68 75.0
Prupe.1G145900 Prunus persica HOM05D001921 ORTHO05D001784 1.9e-17 92.0 69 73.9
TAR365G0872 Trochodendron aralioides HOM05D001921 ORTHO05D001784 1.9e-17 92.0 71 70.4
CsaV3_6G005540 Cucumis sativus L. HOM05D001921 ORTHO05D001784 7.2e-17 90.1 67 74.6
MELO3C021383.2 Cucumis melo HOM05D001921 ORTHO05D001784 1.2e-16 89.4 67 71.6
CiPaw.01G156200 Carya illinoinensis HOM05D001921 ORTHO05D001784 1.6e-16 89.0 70 68.6
Manes.15G019800 Manihot esculenta HOM05D001921 ORTHO05D001784 1.6e-16 89.0 70 72.9
Potri.008G198000 Populus trichocarpa HOM05D001921 ORTHO05D001784 2.1e-16 88.6 69 75.4
Potri.010G027500 Populus trichocarpa HOM05D001921 ORTHO05D001784 2.7e-16 88.2 67 76.1
Thecc.04G273300 Theobroma cacao HOM05D001921 ORTHO05D001784 2.7e-16 88.2 70 70.0
Manes.03G188600 Manihot esculenta HOM05D001921 ORTHO05D001784 8.0e-16 86.7 70 71.4
Sabra08G0162400 Salix brachista HOM05D001921 ORTHO05D001784 8.0e-16 86.7 70 72.9
TAR362G1200 Trochodendron aralioides HOM05D001921 ORTHO05D001784 8.0e-16 86.7 70 67.1
Gohir.A10G105100 Gossypium hirsutum HOM05D001921 ORTHO05D001784 1.0e-15 86.3 70 71.4
Gohir.D10G163601 Gossypium hirsutum HOM05D001921 ORTHO05D001784 1.0e-15 86.3 70 71.4
Cpa.g.sc16.79 Carica papaya HOM05D001921 ORTHO05D001784 1.4e-15 85.9 70 70.0
Duzib212G0985 Durio zibethinus HOM05D001921 ORTHO05D001784 1.4e-15 85.9 70 71.4
CANSAT78G1722 Cannabis sativa HOM05D001921 ORTHO05D001784 3.0e-15 84.7 67 67.2
Sed0007577 Sechium edule HOM05D001921 ORTHO05D001784 3.0e-15 84.7 68 69.1
Gorai.011G182400 Gossypium raimondii HOM05D001921 ORTHO05D001784 5.2e-15 84.0 70 70.0
Duzib151G0850 Durio zibethinus HOM05D001921 ORTHO05D001784 1.1e-14 82.8 70 67.1
FvH4_4g16740 Fragaria vesca HOM05D001921 ORTHO05D001784 2.0e-14 82.0 68 69.1
FAN12G2234 Fragaria x ananassa HOM05D001921 ORTHO05D001784 2.0e-14 82.0 68 69.1
FAN12G3386 Fragaria x ananassa HOM05D001921 ORTHO05D001784 2.0e-14 82.0 68 69.1
FAN22G2319 Fragaria x ananassa HOM05D001921 ORTHO05D001784 2.0e-14 82.0 68 69.1
Gohir.D09G059900 Gossypium hirsutum HOM05D001921 ORTHO05D001784 2.0e-14 82.0 70 68.6
Gorai.006G074600 Gossypium raimondii HOM05D001921 ORTHO05D001784 2.0e-14 82.0 70 68.6
Gohir.A09G060900 Gossypium hirsutum HOM05D001921 ORTHO05D001784 3.3e-14 81.3 70 68.6
TAR636G3386 Trochodendron aralioides HOM05D001921 ORTHO05D001784 4.4e-14 80.9 70 62.9
PGR031G1199 Punica granatum HOM05D001921 ORTHO05D001784 5.7e-14 80.5 65 64.6
FAN17G2860 Fragaria x ananassa HOM05D001921 ORTHO05D001784 9.7e-14 79.7 68 67.6
PGR004G0777 Punica granatum HOM05D001921 ORTHO05D001784 9.7e-14 79.7 65 69.2
RcHm_v2.0_Chr4g0420321 Rosa chinensis HOM05D001921 ORTHO05D001784 9.7e-14 79.7 68 67.6
Sed0022941 Sechium edule HOM05D001921 ORTHO05D001784 4.8e-13 77.4 68 61.8
Ciclev10005894m.g Citrus clementina HOM05D001921 ORTHO05D001784 1.1e-12 76.3 69 62.3
TPR.G18029 Trifolium pratense HOM05D001921 ORTHO05D001784 1.1e-12 76.3 64 60.9
FAN07G0769 Fragaria x ananassa HOM05D001921 ORTHO05D001784 1.4e-12 75.9 64 68.8
Medtr2g020830 Medicago truncatula HOM05D001921 ORTHO05D001784 1.4e-12 75.9 67 61.2
VMungo0540G1436 Vigna mungo HOM05D001921 ORTHO05D001784 1.8e-12 75.5 66 62.1
Ca_21561_v3 Cicer arietinum L. HOM05D001921 ORTHO05D001784 2.4e-12 75.1 55 70.9
Lj6g0003156 Lotus japonicus HOM05D001921 ORTHO05D001784 2.4e-12 75.1 67 62.7
Lj6g0019677 Lotus japonicus HOM05D001921 ORTHO05D001784 2.4e-12 75.1 67 62.7
Ca_00585_v3 Cicer arietinum L. HOM05D001921 ORTHO05D001784 3.1e-12 74.7 66 59.1
ATR0580G129 Amborella trichopoda HOM05D001921 ORTHO05D001784 7.0e-12 73.6 68 55.9
MD03G1009700 Malus domestica HOM05D001921 ORTHO05D001784 1.2e-11 72.8 56 71.4
Sabra10G0013000 Salix brachista HOM05D001921 ORTHO05D001784 1.2e-11 72.8 67 65.7
Glyma.13G212500 Glycine max HOM05D001921 ORTHO05D001784 2.0e-11 72.0 67 62.7
Hma1.2p1_0643F.1_g194540 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 2.6e-11 71.6 71 62.0
Psat1g185920 Pisum sativum HOM05D001921 ORTHO05D001784 3.5e-11 71.2 67 56.7
Psat4g028640 Pisum sativum HOM05D001921 ORTHO05D001784 5.9e-11 70.5 55 67.3
Glyma.17G021000 Glycine max HOM05D001921 ORTHO05D001784 7.7e-11 70.1 50 70.0
Lalb_Chr12g0196391 Lupinus albus HOM05D001921 ORTHO05D001784 7.7e-11 70.1 55 67.3
VMungo1215G1281 Vigna mungo HOM05D001921 ORTHO05D001784 7.7e-11 70.1 50 68.0
arahy.Tifrunner.gnm1.ann1.288BMH Arachis hypogaea HOM05D001921 ORTHO05D001784 1.0e-10 69.7 73 56.2
arahy.Tifrunner.gnm1.ann1.XA6I97 Arachis hypogaea HOM05D001921 ORTHO05D001784 1.0e-10 69.7 73 56.2
Eucgr.H03650 Eucalyptus grandis HOM05D001921 ORTHO05D001784 1.7e-10 68.9 48 75.0
Glyma.07G253400 Glycine max HOM05D001921 ORTHO05D001784 1.7e-10 68.9 50 70.0
Phvul.006G158900 Phaseolus vulgaris HOM05D001921 ORTHO05D001784 1.7e-10 68.9 65 61.5
Lalb_Chr15g0087151 Lupinus albus HOM05D001921 ORTHO05D001784 2.9e-10 68.2 65 60.0
MBI18_g10965_MAGBIO Magnolia biondii HOM05D001921 ORTHO05D001784 2.9e-10 68.2 68 58.8
Glyma.15G100300 Glycine max HOM05D001921 ORTHO05D001784 5.0e-10 67.4 67 62.7
Medtr4g118490 Medicago truncatula HOM05D001921 ORTHO05D001784 5.0e-10 67.4 50 72.0
TPR.G28126 Trifolium pratense HOM05D001921 ORTHO05D001784 5.0e-10 67.4 54 64.8
Hma1.2p1_0511F.1_g169240 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 6.5e-10 67.0 58 67.2
Atru.chr4.2710 Acer truncatum HOM05D001921 ORTHO05D001784 1.5e-09 65.9 59 64.4
Phvul.003G098700 Phaseolus vulgaris HOM05D001921 ORTHO05D001784 1.9e-09 65.5 50 66.0
Oeu032694.1 Olea europaea HOM05D001921 ORTHO05D001784 5.5e-09 63.9 70 57.1
Rhsim02G0016000 Rhododendron simsii HOM05D001921 ORTHO05D001784 5.5e-09 63.9 73 49.3
Sc15g0003760 Simmondsia chinensis HOM05D001921 ORTHO05D001784 5.5e-09 63.9 50 70.0
Atru.chr7.2506 Acer truncatum HOM05D001921 ORTHO05D001784 2.1e-08 62.0 61 50.8
Lj4g0019196 Lotus japonicus HOM05D001921 ORTHO05D001784 2.1e-08 62.0 45 71.1
MBI19_g25275_MAGBIO Magnolia biondii HOM05D001921 ORTHO05D001784 2.7e-08 61.6 53 60.4
Actinidia32376 Actinidia chinensis HOM05D001921 ORTHO05D001784 3.6e-08 61.2 71 54.9
Nitab4.5_0009936g0010 Nicotiana tabacum HOM05D001921 ORTHO05D001784 3.6e-08 61.2 68 54.4
Oeu022233.1 Olea europaea HOM05D001921 ORTHO05D001784 3.6e-08 61.2 72 55.6
Aqoxy2G03179 Aquilegia oxysepala HOM05D001921 ORTHO05D001784 6.1e-08 60.5 67 52.2
Carub.0003s2161 Capsella rubella HOM05D001921 ORTHO05D001784 6.1e-08 60.5 62 61.3
DCAR_027127 Daucus carota HOM05D001921 ORTHO05D001784 6.1e-08 60.5 47 66.0
Nitab4.5_0003070g0060 Nicotiana tabacum HOM05D001921 ORTHO05D001784 8.0e-08 60.1 71 60.6
SGA_v2.0_scaffold142G35647 Striga asiatica HOM05D001921 ORTHO05D001784 8.0e-08 60.1 73 53.4
Thecc.09G018900 Theobroma cacao HOM05D001921 ORTHO05D001784 8.0e-08 60.1 67 44.8
Gohir.A06G100200 Gossypium hirsutum HOM05D001921 ORTHO05D001784 1.0e-07 59.7 69 47.8
Gohir.D06G102300 Gossypium hirsutum HOM05D001921 ORTHO05D001784 1.0e-07 59.7 69 47.8
Gorai.010G117300 Gossypium raimondii HOM05D001921 ORTHO05D001784 1.0e-07 59.7 69 47.8
Dinv03521 Davidia involucrata HOM05D001921 ORTHO05D001784 1.4e-07 59.3 67 49.3
Nitab4.5_0002295g0070 Nicotiana tabacum HOM05D001921 ORTHO05D001784 1.4e-07 59.3 68 52.9
AT3G21570 Arabidopsis thaliana HOM05D001921 ORTHO05D001784 1.8e-07 58.9 54 63.0
SalBow2G1161 Salvia bowleyana HOM05D001921 ORTHO05D001784 1.8e-07 58.9 72 55.6
MSTRG.3970 Avicennia marina HOM05D001921 ORTHO05D001784 2.3e-07 58.5 72 55.6
CARHR097520 Cardamine hirsuta HOM05D001921 ORTHO05D001784 2.3e-07 58.5 71 53.5
Nn3g21201 Nelumbo nucifera HOM05D001921 ORTHO05D001784 2.3e-07 58.5 48 62.5
Os01g0384800 Oryza sativa ssp. japonica HOM05D001921 ORTHO05D001784 2.3e-07 58.5 47 63.8
Gohir.A07G030700 Gossypium hirsutum HOM05D001921 ORTHO05D001784 3.0e-07 58.2 69 47.8
Gohir.D07G034600 Gossypium hirsutum HOM05D001921 ORTHO05D001784 3.0e-07 58.2 69 47.8
Gorai.001G036300 Gossypium raimondii HOM05D001921 ORTHO05D001784 3.0e-07 58.2 69 47.8
Aa31LG8G8240 Aethionema arabicum HOM05D001921 ORTHO05D001784 4.0e-07 57.8 53 64.2
AL3G35680 Arabidopsis lyrata HOM05D001921 ORTHO05D001784 4.0e-07 57.8 54 63.0
Lalb_Chr18g0055871 Lupinus albus HOM05D001921 ORTHO05D001784 4.0e-07 57.8 47 63.8
Nitab4.5_0000059g0260 Nicotiana tabacum HOM05D001921 ORTHO05D001784 4.0e-07 57.8 71 59.2
Nitab4.5_0002992g0090 Nicotiana tabacum HOM05D001921 ORTHO05D001784 4.0e-07 57.8 69 53.6
PSO782G1936 Papaver somniferum HOM05D001921 ORTHO05D001784 4.0e-07 57.8 54 59.3
CDE11G0807 Ceratophyllum demersum HOM05D001921 ORTHO05D001784 5.2e-07 57.4 53 58.5
Ciclev10009542m.g Citrus clementina HOM05D001921 ORTHO05D001784 6.7e-07 57.0 68 54.4
PGSC0003DMG400030765 Solanum tuberosum HOM05D001921 ORTHO05D001784 6.7e-07 57.0 67 53.7
THA.LOC104820224 Tarenaya hassleriana HOM05D001921 ORTHO05D001784 6.7e-07 57.0 51 66.7
BcaB04g20578 Brassica carinata HOM05D001921 ORTHO05D001784 8.8e-07 56.6 54 61.1
BcaC09g49094 Brassica carinata HOM05D001921 ORTHO05D001784 8.8e-07 56.6 54 63.0
A01p33350 Brassica napus HOM05D001921 ORTHO05D001784 8.8e-07 56.6 54 63.0
C01p42590 Brassica napus HOM05D001921 ORTHO05D001784 8.8e-07 56.6 54 63.0
BolC1t04216H Brassica oleracea HOM05D001921 ORTHO05D001784 8.8e-07 56.6 54 63.0
BraA01t03453Z Brassica rapa HOM05D001921 ORTHO05D001784 8.8e-07 56.6 54 63.0
DCAR_023282 Daucus carota HOM05D001921 ORTHO05D001784 8.8e-07 56.6 48 66.7
Hma1.2p1_0228F.1_g096620 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 8.8e-07 56.6 68 50.0
Sp3g19600 Schrenkiella parvula HOM05D001921 ORTHO05D001784 8.8e-07 56.6 54 63.0
Duzib187G0974 Durio zibethinus HOM05D001921 ORTHO05D001784 1.2e-06 56.2 69 44.9
Manes.16G126400 Manihot esculenta HOM05D001921 ORTHO05D001784 1.2e-06 56.2 70 47.1
Oeu037657.1 Olea europaea HOM05D001921 ORTHO05D001784 1.2e-06 56.2 72 47.2
Solyc01g080500.2 Solanum lycopersicum HOM05D001921 ORTHO05D001784 1.2e-06 56.2 72 54.2
Sopen01g032320 Solanum pennellii HOM05D001921 ORTHO05D001784 1.2e-06 56.2 72 54.2
TAR383G0606 Trochodendron aralioides HOM05D001921 ORTHO05D001784 1.2e-06 56.2 69 50.7
Nitab4.5_0009186g0010 Nicotiana tabacum HOM05D001921 ORTHO05D001784 1.5e-06 55.8 69 53.6
Aqoxy5G00575 Aquilegia oxysepala HOM05D001921 ORTHO05D001784 2.0e-06 55.5 49 59.2
COL.COLO4_18922 Corchorus olitorius HOM05D001921 ORTHO05D001784 2.6e-06 55.1 47 57.4
Sopen06g019540 Solanum pennellii HOM05D001921 ORTHO05D001784 2.6e-06 55.1 66 53.0
SGA_v2.0_scaffold57G20294 Striga asiatica HOM05D001921 ORTHO05D001784 2.6e-06 55.1 68 51.5
unitig_748.g8567 Utricularia gibba HOM05D001921 ORTHO05D001784 2.6e-06 55.1 65 56.9
Duzib168G1630 Durio zibethinus HOM05D001921 ORTHO05D001784 3.3e-06 54.7 47 57.4
Solyc06g054470.1 Solanum lycopersicum HOM05D001921 ORTHO05D001784 3.3e-06 54.7 46 63.0
CAN.G142.1 Capsicum annuum HOM05D001921 ORTHO05D001784 4.4e-06 54.3 69 52.2
CAN.G889.1 Capsicum annuum HOM05D001921 ORTHO05D001784 4.4e-06 54.3 74 51.4
DCAR_030578 Daucus carota HOM05D001921 ORTHO05D001784 4.4e-06 54.3 47 55.3
Actinidia00069 Actinidia chinensis HOM05D001921 ORTHO05D001784 5.7e-06 53.9 72 50.0
Dinv42904 Davidia involucrata HOM05D001921 ORTHO05D001784 5.7e-06 53.9 69 52.2
Dinv43197 Davidia involucrata HOM05D001921 ORTHO05D001784 5.7e-06 53.9 69 52.2
PGSC0003DMG400032113 Solanum tuberosum HOM05D001921 ORTHO05D001784 5.7e-06 53.9 73 52.1
CAN.G1045.40 Capsicum annuum HOM05D001921 ORTHO05D001784 7.5e-06 53.5 69 50.7
DCAR_002429 Daucus carota HOM05D001921 ORTHO05D001784 7.5e-06 53.5 48 60.4
Migut.G00240 Erythranthe guttata HOM05D001921 ORTHO05D001784 7.5e-06 53.5 68 50.0
unitig_32.g11745 Utricularia gibba HOM05D001921 ORTHO05D001784 7.5e-06 53.5 64 50.0
Aqoxy7G03512 Aquilegia oxysepala HOM05D001921 ORTHO05D001784 9.7e-06 53.1 69 46.4
Nn2g12262 Nelumbo nucifera HOM05D001921 ORTHO05D001784 9.7e-06 53.1 69 52.2


User provided reference genes

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