Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa010081 Carpinus fangiana HOM05D003745 ORTHO05D004215 1.2e-43 179.5 91 100.0
Haze_23447 Corylus avellana HOM05D003745 ORTHO05D004215 1.3e-34 149.4 91 86.8
QL01p013692 Quercus lobata HOM05D003745 ORTHO05D004215 4.9e-26 120.9 91 67.0
CiPaw.14G103500 Carya illinoinensis HOM05D003745 ORTHO05D004215 1.9e-25 119.0 94 64.9
Dinv29425 Davidia involucrata HOM05D003745 ORTHO05D004215 4.6e-24 114.4 93 64.5
vmacro03277 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 4.3e-22 107.8 96 59.4
vmacro23109 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 4.3e-22 107.8 96 59.4
CiPaw.13G141100 Carya illinoinensis HOM05D003745 ORTHO05D004215 5.7e-22 107.5 92 66.3
Thecc.09G291500 Theobroma cacao HOM05D003745 ORTHO05D004215 3.1e-20 101.7 88 60.2
Ciclev10003706m.g Citrus clementina HOM05D003745 ORTHO05D004215 5.3e-20 100.9 93 59.1
Gohir.D07G111300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 5.3e-20 100.9 88 61.4
GSVIVG01031398001 Vitis vinifera HOM05D003745 ORTHO05D004215 5.3e-20 100.9 95 58.9
CSS0050359 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 9.0e-20 100.1 94 54.3
Gohir.A07G107300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.2e-19 99.8 88 61.4
Gorai.001G119600 Gossypium raimondii HOM05D003745 ORTHO05D004215 2.6e-19 98.6 88 60.2
Duzib150G0771 Durio zibethinus HOM05D003745 ORTHO05D004215 5.9e-19 97.4 88 56.8
Manes.11G157100 Manihot esculenta HOM05D003745 ORTHO05D004215 5.9e-19 97.4 90 57.8
Actinidia35448 Actinidia chinensis HOM05D003745 ORTHO05D004215 7.6e-19 97.1 94 58.5
Potri.004G188200 Populus trichocarpa HOM05D003745 ORTHO05D004215 1.0e-18 96.7 94 55.3
Rhsim13G0105100 Rhododendron simsii HOM05D003745 ORTHO05D004215 1.0e-18 96.7 96 59.4
RcHm_v2.0_Chr5g0055241 Rosa chinensis HOM05D003745 ORTHO05D004215 1.0e-18 96.7 92 53.3
COL.COLO4_19298 Corchorus olitorius HOM05D003745 ORTHO05D004215 1.3e-18 96.3 89 60.7
FAN21G0140 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.3e-18 96.3 91 56.0
Gorai.006G109700 Gossypium raimondii HOM05D003745 ORTHO05D004215 1.3e-18 96.3 88 59.1
FAN11G3796 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.7e-18 95.9 91 56.0
FvH4_3g29900 Fragaria vesca HOM05D003745 ORTHO05D004215 3.8e-18 94.7 91 56.0
Glyma.12G181700 Glycine max HOM05D003745 ORTHO05D004215 6.5e-18 94.0 87 57.5
Actinidia37099 Actinidia chinensis HOM05D003745 ORTHO05D004215 8.5e-18 93.6 95 55.8
Potri.009G148900 Populus trichocarpa HOM05D003745 ORTHO05D004215 8.5e-18 93.6 83 63.9
Gohir.D09G093000 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.1e-17 93.2 88 56.8
Actinidia24179 Actinidia chinensis HOM05D003745 ORTHO05D004215 1.4e-17 92.8 91 56.0
Duzib168G0884 Durio zibethinus HOM05D003745 ORTHO05D004215 1.4e-17 92.8 89 57.3
Gohir.A09G093200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.4e-17 92.8 88 56.8
FAN16G1639 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.9e-17 92.4 91 53.8
TWI75G0377 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 1.9e-17 92.4 94 58.5
CSS0049961 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 3.2e-17 91.7 94 53.2
Ciclev10029683m.g Citrus clementina HOM05D003745 ORTHO05D004215 5.5e-17 90.9 93 54.8
Glyma.13G319200 Glycine max HOM05D003745 ORTHO05D004215 7.2e-17 90.5 86 55.8
Sabra04G0127200 Salix brachista HOM05D003745 ORTHO05D004215 7.2e-17 90.5 94 52.1
Phvul.005G127200 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 9.3e-17 90.1 85 57.6
Actinidia07207 Actinidia chinensis HOM05D003745 ORTHO05D004215 1.2e-16 89.7 85 57.6
MD11G1157500 Malus domestica HOM05D003745 ORTHO05D004215 3.6e-16 88.2 95 49.5
TAR636G1780 Trochodendron aralioides HOM05D003745 ORTHO05D004215 7.9e-16 87.0 68 67.6
Thecc.05G081300 Theobroma cacao HOM05D003745 ORTHO05D004215 3.0e-15 85.1 92 47.8
CiPaw.09G008800 Carya illinoinensis HOM05D003745 ORTHO05D004215 5.1e-15 84.3 95 48.4
DCAR_006146 Daucus carota HOM05D003745 ORTHO05D004215 5.1e-15 84.3 87 57.5
CSS0006810 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 6.7e-15 84.0 96 49.0
TWI79G1201 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 8.8e-15 83.6 93 53.8
QL07p040518 Quercus lobata HOM05D003745 ORTHO05D004215 1.1e-14 83.2 80 55.0
TAR633G1338 Trochodendron aralioides HOM05D003745 ORTHO05D004215 1.9e-14 82.4 65 63.1
Cc01_g09790 Coffea canephora HOM05D003745 ORTHO05D004215 7.4e-14 80.5 96 45.8
Nn2g14004 Nelumbo nucifera HOM05D003745 ORTHO05D004215 7.4e-14 80.5 94 52.1
SalBow6G4256 Salvia bowleyana HOM05D003745 ORTHO05D004215 7.4e-14 80.5 89 52.8
C01p34270 Brassica napus HOM05D003745 ORTHO05D004215 1.3e-13 79.7 82 48.8
BolC1t03395H Brassica oleracea HOM05D003745 ORTHO05D004215 1.3e-13 79.7 82 48.8
Sc12g0004160 Simmondsia chinensis HOM05D003745 ORTHO05D004215 1.3e-13 79.7 87 49.4
Dinv21253 Davidia involucrata HOM05D003745 ORTHO05D004215 1.7e-13 79.3 88 46.6
Dinv19830 Davidia involucrata HOM05D003745 ORTHO05D004215 2.2e-13 79.0 94 48.9
Sabra09G0117500 Salix brachista HOM05D003745 ORTHO05D004215 2.2e-13 79.0 58 62.1
Cpa.g.sc5.75 Carica papaya HOM05D003745 ORTHO05D004215 8.2e-13 77.0 82 48.8
TPR.G5649 Trifolium pratense HOM05D003745 ORTHO05D004215 8.2e-13 77.0 84 51.2
Atru.chr3.3378 Acer truncatum HOM05D003745 ORTHO05D004215 1.1e-12 76.6 65 60.0
AT3G44735 Arabidopsis thaliana HOM05D003745 ORTHO05D004215 1.4e-12 76.3 81 46.9
TAR369G1123 Trochodendron aralioides HOM05D003745 ORTHO05D004215 1.4e-12 76.3 96 50.0
Duzib093G0672 Durio zibethinus HOM05D003745 ORTHO05D004215 2.4e-12 75.5 80 53.8
Carub.0005s1042 Capsella rubella HOM05D003745 ORTHO05D004215 3.1e-12 75.1 82 50.0
Carub.0015s0003 Capsella rubella HOM05D003745 ORTHO05D004215 3.1e-12 75.1 82 50.0
Cc06_g05290 Coffea canephora HOM05D003745 ORTHO05D004215 3.1e-12 75.1 87 49.4
HanXRQChr13g0396991 Helianthus annuus HOM05D003745 ORTHO05D004215 3.1e-12 75.1 83 54.2
Lj3g0011252 Lotus japonicus HOM05D003745 ORTHO05D004215 3.1e-12 75.1 93 50.5
Psat7g007360 Pisum sativum HOM05D003745 ORTHO05D004215 3.1e-12 75.1 85 49.4
AL5G22960 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 5.3e-12 74.3 76 50.0
MSTRG.21061 Avicennia marina HOM05D003745 ORTHO05D004215 5.3e-12 74.3 86 47.7
CANSAT54G1542 Cannabis sativa HOM05D003745 ORTHO05D004215 5.3e-12 74.3 71 62.0
CARHR151430 Cardamine hirsuta HOM05D003745 ORTHO05D004215 5.3e-12 74.3 76 53.9
GSVIVG01033785001 Vitis vinifera HOM05D003745 ORTHO05D004215 5.3e-12 74.3 92 50.0
MD03G1134700 Malus domestica HOM05D003745 ORTHO05D004215 6.9e-12 73.9 85 47.1
Sp5g16440 Schrenkiella parvula HOM05D003745 ORTHO05D004215 9.1e-12 73.6 87 43.7
Duzib106G0171 Durio zibethinus HOM05D003745 ORTHO05D004215 1.2e-11 73.2 89 47.2
Oeu001652.1 Olea europaea HOM05D003745 ORTHO05D004215 1.2e-11 73.2 95 48.4
Peaxi162Scf00789g00618 Petunia axillaris HOM05D003745 ORTHO05D004215 1.2e-11 73.2 90 42.2
Atru.chr8.1631 Acer truncatum HOM05D003745 ORTHO05D004215 1.5e-11 72.8 89 47.2
Ciclev10013197m.g Citrus clementina HOM05D003745 ORTHO05D004215 1.5e-11 72.8 97 48.5
Duzib128G0603 Durio zibethinus HOM05D003745 ORTHO05D004215 1.5e-11 72.8 90 48.9
Rhsim03G0081200 Rhododendron simsii HOM05D003745 ORTHO05D004215 1.5e-11 72.8 85 45.9
Duzib106G0076 Durio zibethinus HOM05D003745 ORTHO05D004215 2.0e-11 72.4 87 47.1
ECA233G0462 Erigeron canadensis HOM05D003745 ORTHO05D004215 2.0e-11 72.4 87 46.0
Eucgr.B03895 Eucalyptus grandis HOM05D003745 ORTHO05D004215 2.0e-11 72.4 91 46.2
Glyma.10G066400 Glycine max HOM05D003745 ORTHO05D004215 2.0e-11 72.4 87 48.3
MSTRG.17729 Avicennia marina HOM05D003745 ORTHO05D004215 2.6e-11 72.0 101 41.6
arahy.Tifrunner.gnm1.ann1.T88YYN Arachis hypogaea HOM05D003745 ORTHO05D004215 4.5e-11 71.2 96 45.8
EL10Ac9g21084 Beta vulgaris HOM05D003745 ORTHO05D004215 4.5e-11 71.2 98 46.9
Nn6g35042 Nelumbo nucifera HOM05D003745 ORTHO05D004215 4.5e-11 71.2 62 54.8
PSO339G5919 Papaver somniferum HOM05D003745 ORTHO05D004215 4.5e-11 71.2 96 44.8
Hund00782 Selenicereus undatus HOM05D003745 ORTHO05D004215 4.5e-11 71.2 104 44.2
BraA01t02615Z Brassica rapa HOM05D003745 ORTHO05D004215 5.9e-11 70.9 82 47.6
PGSC0003DMG400002682 Solanum tuberosum HOM05D003745 ORTHO05D004215 5.9e-11 70.9 83 50.6
vmacro23105 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 5.9e-11 70.9 64 59.4
THA.LOC104799535 Tarenaya hassleriana HOM05D003745 ORTHO05D004215 7.7e-11 70.5 90 47.8
MD14G1016200 Malus domestica HOM05D003745 ORTHO05D004215 1.0e-10 70.1 89 47.2
TWI77G0164 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 1.0e-10 70.1 84 48.8
Aqoxy2G01397 Aquilegia oxysepala HOM05D003745 ORTHO05D004215 2.2e-10 68.9 103 42.7
arahy.Tifrunner.gnm1.ann1.X8LT49 Arachis hypogaea HOM05D003745 ORTHO05D004215 2.2e-10 68.9 96 44.8
Lsat_1_v5_gn_6_41120 Lactuca sativa HOM05D003745 ORTHO05D004215 2.2e-10 68.9 42 66.7
Nitab4.5_0000663g0130 Nicotiana tabacum HOM05D003745 ORTHO05D004215 2.2e-10 68.9 78 50.0
Rhsim01G0208400 Rhododendron simsii HOM05D003745 ORTHO05D004215 2.2e-10 68.9 44 70.5
Lalb_Chr02g0155181 Lupinus albus HOM05D003745 ORTHO05D004215 2.9e-10 68.6 86 46.5
PSO384G0932 Papaver somniferum HOM05D003745 ORTHO05D004215 2.9e-10 68.6 96 44.8
SalBow3G0913 Salvia bowleyana HOM05D003745 ORTHO05D004215 3.8e-10 68.2 82 45.1
Gohir.A01G209100 Gossypium hirsutum HOM05D003745 ORTHO05D004215 5.0e-10 67.8 84 46.4
Lalb_Chr14g0374201 Lupinus albus HOM05D003745 ORTHO05D004215 5.0e-10 67.8 88 44.3
Manes.09G058940 Manihot esculenta HOM05D003745 ORTHO05D004215 5.0e-10 67.8 92 47.8
MD12G1018200 Malus domestica HOM05D003745 ORTHO05D004215 6.5e-10 67.4 92 43.5
Medtr1g061120 Medicago truncatula HOM05D003745 ORTHO05D004215 6.5e-10 67.4 89 46.1
TPR.G32386 Trifolium pratense HOM05D003745 ORTHO05D004215 6.5e-10 67.4 90 46.7
vmacro07360 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 6.5e-10 67.4 86 45.3
FAN02G0871 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.1e-09 66.6 37 78.4
CiPaw.10G005500 Carya illinoinensis HOM05D003745 ORTHO05D004215 1.9e-09 65.9 83 43.4
Oeu050182.1 Olea europaea HOM05D003745 ORTHO05D004215 1.9e-09 65.9 95 43.2
Thhalv10002908m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 2.5e-09 65.5 50 60.0
FvH4_6g17920 Fragaria vesca HOM05D003745 ORTHO05D004215 2.5e-09 65.5 91 44.0
FAN05G2107 Fragaria x ananassa HOM05D003745 ORTHO05D004215 2.5e-09 65.5 91 46.2
FAN05G2814 Fragaria x ananassa HOM05D003745 ORTHO05D004215 2.5e-09 65.5 91 46.2
FAN14G5394 Fragaria x ananassa HOM05D003745 ORTHO05D004215 2.5e-09 65.5 91 44.0
Medtr2g084855 Medicago truncatula HOM05D003745 ORTHO05D004215 2.5e-09 65.5 91 45.1
Actinidia11335 Actinidia chinensis HOM05D003745 ORTHO05D004215 3.2e-09 65.1 83 45.8
Gohir.D01G198200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 3.2e-09 65.1 88 44.3
Gorai.002G242400 Gossypium raimondii HOM05D003745 ORTHO05D004215 3.2e-09 65.1 88 44.3
Peaxi162Scf00433g00025 Petunia axillaris HOM05D003745 ORTHO05D004215 4.2e-09 64.7 79 48.1
TWI74G0799 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 4.2e-09 64.7 92 40.2
Gohir.A04G066114 Gossypium hirsutum HOM05D003745 ORTHO05D004215 5.5e-09 64.3 81 43.2
Phvul.007G223101 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 5.5e-09 64.3 87 46.0
RcHm_v2.0_Chr3g0472171 Rosa chinensis HOM05D003745 ORTHO05D004215 5.5e-09 64.3 91 44.0
Sopen06g031010 Solanum pennellii HOM05D003745 ORTHO05D004215 5.5e-09 64.3 57 54.4
Sopen09g003840 Solanum pennellii HOM05D003745 ORTHO05D004215 5.5e-09 64.3 76 47.4
Manes.08G021100 Manihot esculenta HOM05D003745 ORTHO05D004215 7.2e-09 63.9 49 61.2
Oeu040536.1 Olea europaea HOM05D003745 ORTHO05D004215 9.4e-09 63.5 83 44.6
Peaxi162Scf00157g00066 Petunia axillaris HOM05D003745 ORTHO05D004215 1.2e-08 63.2 92 43.5
Migut.N02515 Erythranthe guttata HOM05D003745 ORTHO05D004215 1.6e-08 62.8 93 38.7
Gohir.D01G198300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.6e-08 62.8 94 39.4
Nitab4.5_0006360g0020 Nicotiana tabacum HOM05D003745 ORTHO05D004215 2.1e-08 62.4 79 48.1
Prupe.7G116900 Prunus persica HOM05D003745 ORTHO05D004215 2.1e-08 62.4 36 72.2
Lj5g0022060 Lotus japonicus HOM05D003745 ORTHO05D004215 2.7e-08 62.0 88 42.0
Lalb_Chr22g0350641 Lupinus albus HOM05D003745 ORTHO05D004215 2.7e-08 62.0 87 44.8
arahy.Tifrunner.gnm1.ann1.AP4865 Arachis hypogaea HOM05D003745 ORTHO05D004215 3.6e-08 61.6 91 45.1
arahy.Tifrunner.gnm1.ann1.NCX3KP Arachis hypogaea HOM05D003745 ORTHO05D004215 3.6e-08 61.6 91 45.1
Nitab4.5_0010833g0010 Nicotiana tabacum HOM05D003745 ORTHO05D004215 3.6e-08 61.6 82 43.9
Solyc06g074540.4 Solanum lycopersicum HOM05D003745 ORTHO05D004215 3.6e-08 61.6 57 52.6
PGSC0003DMG400026535 Solanum tuberosum HOM05D003745 ORTHO05D004215 3.6e-08 61.6 97 41.2
Gohir.A01G209200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 4.7e-08 61.2 92 39.1
C09p73210 Brassica napus HOM05D003745 ORTHO05D004215 6.1e-08 60.8 90 40.0
BolC9t60056H Brassica oleracea HOM05D003745 ORTHO05D004215 6.1e-08 60.8 90 40.0
Eucgr.A01541 Eucalyptus grandis HOM05D003745 ORTHO05D004215 6.1e-08 60.8 87 46.0
Glyma.13G151500 Glycine max HOM05D003745 ORTHO05D004215 6.1e-08 60.8 79 43.0
Nitab4.5_0000132g0150 Nicotiana tabacum HOM05D003745 ORTHO05D004215 6.1e-08 60.8 52 53.8
PSO063G0377 Papaver somniferum HOM05D003745 ORTHO05D004215 6.1e-08 60.8 105 42.9
Sc12g0004180 Simmondsia chinensis HOM05D003745 ORTHO05D004215 6.1e-08 60.8 62 48.4
A10p32390 Brassica napus HOM05D003745 ORTHO05D004215 7.9e-08 60.5 92 40.2
BraA10t45279Z Brassica rapa HOM05D003745 ORTHO05D004215 7.9e-08 60.5 92 40.2
SalBow3G0501 Salvia bowleyana HOM05D003745 ORTHO05D004215 7.9e-08 60.5 42 61.9
Solyc11g066880.2 Solanum lycopersicum HOM05D003745 ORTHO05D004215 1.0e-07 60.1 96 40.6
PGSC0003DMG400028173 Solanum tuberosum HOM05D003745 ORTHO05D004215 1.4e-07 59.7 81 45.7
CANSAT80G1673 Cannabis sativa HOM05D003745 ORTHO05D004215 1.8e-07 59.3 105 37.1
CAN.G919.7 Capsicum annuum HOM05D003745 ORTHO05D004215 1.8e-07 59.3 100 38.0
PGR102G0577 Punica granatum HOM05D003745 ORTHO05D004215 3.9e-07 58.2 96 43.8
Sopen11g026590 Solanum pennellii HOM05D003745 ORTHO05D004215 3.9e-07 58.2 80 41.2
PGSC0003DMG400007123 Solanum tuberosum HOM05D003745 ORTHO05D004215 3.9e-07 58.2 86 41.9
AL6G13230 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 6.7e-07 57.4 86 43.0
A01p26850 Brassica napus HOM05D003745 ORTHO05D004215 8.8e-07 57.0 35 68.6
Carub.0006s0262 Capsella rubella HOM05D003745 ORTHO05D004215 8.8e-07 57.0 43 60.5
CAN.G644.31 Capsicum annuum HOM05D003745 ORTHO05D004215 8.8e-07 57.0 96 35.4
Thhalv10015130m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 8.8e-07 57.0 86 41.9
CARHR209590 Cardamine hirsuta HOM05D003745 ORTHO05D004215 1.5e-06 56.2 42 59.5
FAN09G1254 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.5e-06 56.2 91 40.7
ATR0820G192 Amborella trichopoda HOM05D003745 ORTHO05D004215 2.0e-06 55.8 88 42.0
PSO339G1716 Papaver somniferum HOM05D003745 ORTHO05D004215 2.0e-06 55.8 105 38.1
Cfa004702 Carpinus fangiana HOM05D001756 ORTHO05D001581 2.6e-06 55.5 85 45.9
PGR004G1125 Punica granatum HOM05D003745 ORTHO05D004215 2.6e-06 55.5 32 68.8
Sp6g39010 Schrenkiella parvula HOM05D003745 ORTHO05D004215 2.6e-06 55.5 86 40.7
Gorai.002G242500 Gossypium raimondii HOM05D003745 ORTHO05D004215 3.3e-06 55.1 95 37.9
Haze_10304 Corylus avellana HOM05D001756 ORTHO05D001581 4.4e-06 54.7 85 45.9
Solyc10g083580.2 Solanum lycopersicum HOM05D003745 ORTHO05D004215 4.4e-06 54.7 83 42.2


User provided reference genes

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