Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa010076 Carpinus fangiana HOM05D007994 ORTHO05D010092 5.9e-163 577.4 278 100.0
Haze_23442 Corylus avellana HOM05D007994 ORTHO05D010092 4.4e-134 481.5 246 93.9
CiPaw.13G140400 Carya illinoinensis HOM05D007994 ORTHO05D010092 3.8e-101 372.1 273 72.5
QL01p013577 Quercus lobata HOM05D007994 ORTHO05D010092 3.5e-99 365.5 218 79.4
Dinv12515 Davidia involucrata HOM05D007994 ORTHO05D010092 3.4e-86 322.4 271 62.0
Potri.009G148200 Populus trichocarpa HOM05D007994 ORTHO05D010092 5.5e-84 315.1 279 59.1
Thecc.09G290600 Theobroma cacao HOM05D007994 ORTHO05D010092 9.3e-84 314.3 276 61.6
TAR623G0693 Trochodendron aralioides HOM05D007994 ORTHO05D010092 7.9e-83 311.2 263 58.6
Sabra09G0116600 Salix brachista HOM05D007994 ORTHO05D010092 3.0e-82 309.3 277 57.4
COL.COLO4_19306 Corchorus olitorius HOM05D007994 ORTHO05D010092 5.1e-82 308.5 274 58.0
Duzib168G2077 Durio zibethinus HOM05D007994 ORTHO05D010092 2.0e-78 296.6 275 58.2
Manes.11G158100 Manihot esculenta HOM05D007994 ORTHO05D010092 2.6e-78 296.2 277 58.5
Gorai.006G110000 Gossypium raimondii HOM05D007994 ORTHO05D010092 1.9e-76 290.0 261 57.5
Gohir.A09G093700 Gossypium hirsutum HOM05D007994 ORTHO05D010092 2.5e-76 289.7 268 56.7
TWI75G1300 Tripterygium wilfordii HOM05D007994 ORTHO05D010092 7.1e-76 288.1 276 53.6
Gohir.D09G093400 Gossypium hirsutum HOM05D007994 ORTHO05D010092 9.3e-76 287.7 268 57.1
Duzib170G0069 Durio zibethinus HOM05D007994 ORTHO05D010092 2.1e-75 286.6 276 57.6
Aqoxy4G02880 Aquilegia oxysepala HOM05D007994 ORTHO05D010092 3.9e-74 282.3 273 54.2
Cc01_g09740 Coffea canephora HOM05D007994 ORTHO05D010092 4.3e-73 278.9 269 53.9
MSTRG.12356 Avicennia marina HOM05D007994 ORTHO05D010092 3.4e-70 269.2 273 48.7
Lalb_Chr19g0136731 Lupinus albus HOM05D007994 ORTHO05D010092 5.9e-70 268.5 272 52.6
ClCG01G012620 Citrullus lanatus HOM05D007994 ORTHO05D010092 6.1e-67 258.5 273 52.7
CsaV3_1G014550 Cucumis sativus L. HOM05D007994 ORTHO05D010092 3.3e-65 252.7 271 51.7
Glyma.11G188500 Glycine max HOM05D007994 ORTHO05D010092 1.1e-63 247.7 265 49.8
MELO3C004786.2 Cucumis melo HOM05D007994 ORTHO05D010092 3.4e-62 242.7 270 50.7
PSO384G4503 Papaver somniferum HOM05D007994 ORTHO05D010092 7.7e-62 241.5 247 52.2
Prupe.6G120200 Prunus persica HOM05D007994 ORTHO05D010092 7.7e-62 241.5 277 52.0
Lj3g0008283 Lotus japonicus HOM05D007994 ORTHO05D010092 2.2e-61 240.0 271 48.0
VMungo1080G0008 Vigna mungo HOM05D007994 ORTHO05D010092 2.9e-61 239.6 280 47.5
Atru.chr3.3364 Acer truncatum HOM05D007994 ORTHO05D010092 5.5e-60 235.3 265 52.8
Phvul.011G091200 Phaseolus vulgaris HOM05D007994 ORTHO05D010092 6.1e-59 231.9 267 46.8
MD03G1135900 Malus domestica HOM05D007994 ORTHO05D010092 1.1e-57 227.6 274 48.9
CANSAT54G1189 Cannabis sativa HOM05D007994 ORTHO05D010092 2.2e-56 223.4 262 47.3
THA.LOC104814803 Tarenaya hassleriana HOM05D007994 ORTHO05D010092 2.2e-56 223.4 266 46.6
RcHm_v2.0_Chr5g0054991 Rosa chinensis HOM05D007994 ORTHO05D010092 1.1e-52 211.1 275 45.5
Sed0020093 Sechium edule HOM05D007994 ORTHO05D010092 1.8e-50 203.8 272 46.7
FAN16G1405 Fragaria x ananassa HOM05D007994 ORTHO05D010092 7.7e-46 188.3 273 42.1
FAN11G1628 Fragaria x ananassa HOM05D007994 ORTHO05D010092 3.6e-35 152.9 223 42.2
PGSC0003DMG400026538 Solanum tuberosum HOM05D007994 ORTHO05D010092 1.4e-34 151.0 272 34.9
CSS0019289 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 5.2e-34 149.1 137 62.0
Eucgr.J00433 Eucalyptus grandis HOM05D007994 ORTHO05D010092 9.1e-31 138.3 139 49.6
PSO339G3278 Papaver somniferum HOM05D007994 ORTHO05D010092 2.9e-29 133.3 93 62.4
GSVIVG01031390001 Vitis vinifera HOM05D007994 ORTHO05D010092 6.6e-29 132.1 101 57.4
Solyc11g066940.2 Solanum lycopersicum HOM05D007994 ORTHO05D010092 4.2e-28 129.4 271 32.8
Phvul.005G126500 Phaseolus vulgaris HOM05D007994 ORTHO05D010092 5.5e-28 129.0 122 52.5
Nn2g14036 Nelumbo nucifera HOM05D007994 ORTHO05D010092 1.6e-27 127.5 101 57.4
vmacro14359 Vaccinium macrocarpon HOM05D007994 ORTHO05D010092 3.6e-27 126.3 97 59.8
Migut.N02511 Erythranthe guttata HOM05D007994 ORTHO05D010092 5.2e-26 122.5 266 32.7
SEGI_15329 Sequoiadendron giganteum HOM05D007994 ORTHO05D010092 1.3e-24 117.9 273 32.6
Peaxi162Scf00002g05422 Petunia axillaris HOM05D007994 ORTHO05D010092 1.1e-23 114.8 269 32.3
VMungo1127G0625 Vigna mungo HOM05D007994 ORTHO05D010092 1.4e-23 114.4 161 41.0
SalBow3G1236 Salvia bowleyana HOM05D007994 ORTHO05D010092 6.6e-21 105.5 247 30.4
PGR119G1356 Punica granatum HOM05D007994 ORTHO05D010092 1.5e-20 104.4 163 38.7
Rhsim01G0207500 Rhododendron simsii HOM05D007994 ORTHO05D010092 9.5e-20 101.7 69 62.3
Ciclev10029500m.g Citrus clementina HOM05D007994 ORTHO05D010092 6.1e-19 99.0 103 50.5
Actinidia35451 Actinidia chinensis HOM05D000078 ORTHO05D010092 1.8e-18 97.4 70 62.9
Sopen11g026660 Solanum pennellii HOM05D007994 ORTHO05D010092 7.5e-17 92.0 97 47.4
BcaC01g02012 Brassica carinata HOM05D007994 ORTHO05D010092 8.3e-16 88.6 245 28.6
C03p69540 Brassica napus HOM05D007994 ORTHO05D010092 8.3e-16 88.6 245 28.6
BolC3t19209H Brassica oleracea HOM05D007994 ORTHO05D010092 8.3e-16 88.6 245 28.6
A06p21760 Brassica napus HOM05D007994 ORTHO05D010092 3.2e-15 86.7 269 27.9
BraA06t25263Z Brassica rapa HOM05D007994 ORTHO05D010092 3.2e-15 86.7 269 27.9
Oeu058281.1 Olea europaea HOM05D007994 ORTHO05D010092 5.4e-15 85.9 69 56.5
Rhsim12G0093900 Rhododendron simsii HOM05D007994 ORTHO05D010092 1.7e-13 80.9 60 58.3
AT3G44716 Arabidopsis thaliana HOM05D007994 ORTHO05D010092 2.3e-13 80.5 75 49.3
AL5G22890 Arabidopsis lyrata HOM05D007994 ORTHO05D010092 5.0e-13 79.3 79 48.1
BcaB01g01144 Brassica carinata HOM05D007994 ORTHO05D010092 6.6e-13 79.0 47 61.7
TPR.G15591 Trifolium pratense HOM05D007994 ORTHO05D010092 6.6e-13 79.0 70 52.9
Carub.0005s1038 Capsella rubella HOM05D007994 ORTHO05D010092 8.6e-13 78.6 52 55.8
Carub.0015s0006 Capsella rubella HOM05D007994 ORTHO05D010092 8.6e-13 78.6 52 55.8
Sp5g16480 Schrenkiella parvula HOM05D007994 ORTHO05D010092 1.5e-12 77.8 49 59.2
ATR0820G083 Amborella trichopoda HOM05D007994 ORTHO05D010092 1.9e-12 77.4 45 62.2
CARHR151480 Cardamine hirsuta HOM05D007994 ORTHO05D010092 2.8e-11 73.6 75 44.0
Medtr4g055130 Medicago truncatula HOM05D007994 ORTHO05D010092 1.8e-10 70.9 65 46.2
Cpa.g.sc5.295 Carica papaya HOM05D003287 ORTHO05D003688 9.8e-09 65.1 251 25.1
Lj6P699T26 Lonicera japonica HOM05D002950 ORTHO05D009601 1.7e-08 64.3 253 27.7
FAN17G0444 Fragaria x ananassa HOM05D003287 ORTHO05D003688 8.3e-08 62.0 229 27.1
Migut.N00014 Erythranthe guttata HOM05D002950 ORTHO05D009601 1.1e-07 61.6 289 24.6
Peaxi162Scf00102g01048 Petunia axillaris HOM05D002950 ORTHO05D009601 1.4e-07 61.2 243 24.3
FvH4_4g35530 Fragaria vesca HOM05D003287 ORTHO05D003688 1.9e-07 60.8 231 27.7
Nitab4.5_0002052g0030 Nicotiana tabacum HOM05D003287 ORTHO05D003688 2.4e-07 60.5 242 26.9
Atru.chr3.1410 Acer truncatum HOM05D003287 ORTHO05D003688 3.2e-07 60.1 258 27.1
Atru.chr4.1489 Acer truncatum HOM05D003287 ORTHO05D003688 3.2e-07 60.1 258 27.1
Gorai.013G094000 Gossypium raimondii HOM05D005706 ORTHO05D007474 3.2e-07 60.1 243 25.5
FAN22G2046 Fragaria x ananassa HOM05D003287 ORTHO05D003688 4.1e-07 59.7 229 26.6
HanXRQChr17g0544541 Helianthus annuus HOM05D003287 ORTHO05D003688 4.1e-07 59.7 247 27.9
TWI18G0836 Tripterygium wilfordii HOM05D003287 ORTHO05D003688 4.1e-07 59.7 260 25.8
Prupe.3G121800 Prunus persica HOM05D003287 ORTHO05D003688 5.4e-07 59.3 248 26.6
FAN07G0260 Fragaria x ananassa HOM05D003287 ORTHO05D003688 9.2e-07 58.5 229 26.2
Sabra10G0120400 Salix brachista HOM05D003287 ORTHO05D003688 9.2e-07 58.5 270 24.8
Gohir.D13G082200 Gossypium hirsutum HOM05D005706 ORTHO05D007474 1.2e-06 58.2 243 25.5
Cc03_g00300 Coffea canephora HOM05D002950 ORTHO05D009601 2.1e-06 57.4 233 27.5
Medtr4g053310 Medicago truncatula HOM05D007994 ORTHO05D010092 2.7e-06 57.0 37 54.1
RcHm_v2.0_Chr4g0445181 Rosa chinensis HOM05D003287 ORTHO05D003688 3.5e-06 56.6 249 26.1
Potri.010G158500 Populus trichocarpa HOM05D003287 ORTHO05D003688 4.6e-06 56.2 270 25.2
Duzib248G0322 Durio zibethinus HOM05D003287 ORTHO05D003688 6.0e-06 55.8 257 24.9
Atru.chr11.1884 Acer truncatum HOM05D003287 ORTHO05D003688 7.8e-06 55.5 235 26.8
CSS0035567 Camellia sinensis var. sinensis HOM05D003287 ORTHO05D003688 7.8e-06 55.5 235 24.7


User provided reference genes

Program Settings