Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa010064 Carpinus fangiana HOM05D001459 ORTHO05D001359 4.0e-104 381.3 181 100.0
Cfa019338 Carpinus fangiana HOM05D001459 ORTHO05D001359 4.2e-53 211.8 132 76.5
Cfa004158 Carpinus fangiana HOM05D001459 ORTHO05D001359 8.0e-44 181.0 180 53.3
Haze_15122 Corylus avellana HOM05D001459 ORTHO05D001359 1.3e-41 173.7 134 66.4
Cfa004278 Carpinus fangiana HOM05D000088 ORTHO05D001217 1.1e-40 170.6 131 66.4
CiPaw.02G015400 Carya illinoinensis HOM05D001459 ORTHO05D001359 7.0e-40 167.9 149 59.1
CiPaw.01G034500 Carya illinoinensis HOM05D001459 ORTHO05D001359 2.7e-39 166.0 121 66.9
QL06p045359 Quercus lobata HOM05D001459 ORTHO05D001359 2.3e-38 162.9 130 63.1
Cpa.g.sc158.7 Carica papaya HOM05D001459 ORTHO05D001359 3.6e-36 155.6 172 51.7
Prupe.7G150700 Prunus persica HOM05D001459 ORTHO05D001359 3.1e-35 152.5 134 59.0
Sabra07G0025300 Salix brachista HOM05D001459 ORTHO05D001359 6.8e-35 151.4 122 63.1
GSVIVG01019009001 Vitis vinifera HOM05D001459 ORTHO05D001359 1.2e-34 150.6 136 56.6
Potri.005G126000 Populus trichocarpa HOM05D001459 ORTHO05D001359 7.5e-34 147.9 147 55.8
Manes.13G136900 Manihot esculenta HOM05D001459 ORTHO05D001359 2.2e-33 146.4 126 60.3
Potri.007G029400 Populus trichocarpa HOM05D001459 ORTHO05D001359 6.4e-33 144.8 123 60.2
Duzib147G1182 Durio zibethinus HOM05D001459 ORTHO05D001359 2.4e-32 142.9 129 57.4
MD15G1266700 Malus domestica HOM05D001459 ORTHO05D001359 3.2e-32 142.5 134 53.7
ClCG01G019360 Citrullus lanatus HOM05D001459 ORTHO05D001359 4.1e-32 142.1 132 55.3
Atru.chr3.533 Acer truncatum HOM05D001459 ORTHO05D001359 1.2e-31 140.6 123 58.5
CsaV3_6G046080 Cucumis sativus L. HOM05D001459 ORTHO05D001359 3.5e-31 139.0 132 54.5
Ciclev10025963m.g Citrus clementina HOM05D001459 ORTHO05D001359 6.0e-31 138.3 147 51.0
TWI09G0088 Tripterygium wilfordii HOM05D001459 ORTHO05D001359 1.0e-30 137.5 121 57.9
TWI73G0633 Tripterygium wilfordii HOM05D001459 ORTHO05D001359 1.0e-30 137.5 126 57.1
VMungo0251G2841 Vigna mungo HOM05D001459 ORTHO05D001359 1.3e-30 137.1 132 53.8
CANSAT01G1094 Cannabis sativa HOM05D001459 ORTHO05D001359 5.0e-30 135.2 131 54.2
Actinidia36544 Actinidia chinensis HOM05D001459 ORTHO05D001359 6.6e-30 134.8 136 55.9
Nitab4.5_0003410g0090 Nicotiana tabacum HOM05D001459 ORTHO05D001359 8.6e-30 134.4 121 56.2
Thecc.01G039900 Theobroma cacao HOM05D001459 ORTHO05D001359 8.6e-30 134.4 117 58.1
RcHm_v2.0_Chr2g0102191 Rosa chinensis HOM05D001459 ORTHO05D001359 1.1e-29 134.0 150 49.3
CAN.G53.41 Capsicum annuum HOM05D001459 ORTHO05D001359 1.5e-29 133.7 121 57.9
COL.COLO4_22118 Corchorus olitorius HOM05D001459 ORTHO05D001359 1.9e-29 133.3 123 55.3
Eucgr.H01256 Eucalyptus grandis HOM05D001459 ORTHO05D001359 1.9e-29 133.3 126 55.6
Sopen02g013990 Solanum pennellii HOM05D001459 ORTHO05D001359 1.9e-29 133.3 121 57.9
Peaxi162Scf00008g00417 Petunia axillaris HOM05D001459 ORTHO05D001359 2.5e-29 132.9 122 57.4
Actinidia12110 Actinidia chinensis HOM05D001459 ORTHO05D001359 3.3e-29 132.5 173 49.7
Phvul.003G252000 Phaseolus vulgaris HOM05D001459 ORTHO05D001359 3.3e-29 132.5 133 53.4
Solyc02g062950.3 Solanum lycopersicum HOM05D001459 ORTHO05D001359 4.3e-29 132.1 121 57.0
MELO3C007811.2 Cucumis melo HOM05D001459 ORTHO05D001359 1.2e-28 130.6 132 53.0
Lj4g0000001 Lotus japonicus HOM05D001459 ORTHO05D001359 1.6e-28 130.2 138 50.7
Glyma.16G141500 Glycine max HOM05D001459 ORTHO05D001359 2.1e-28 129.8 135 51.9
Dinv39958 Davidia involucrata HOM05D001459 ORTHO05D001359 2.8e-28 129.4 126 56.3
Lalb_Chr05g0227641 Lupinus albus HOM05D001459 ORTHO05D001359 4.7e-28 128.6 135 51.9
FAN26G2630 Fragaria x ananassa HOM05D001459 ORTHO05D001359 6.2e-28 128.3 123 53.7
Gohir.D11G192700 Gossypium hirsutum HOM05D001459 ORTHO05D001359 6.2e-28 128.3 110 59.1
CAN.G358.125 Capsicum annuum HOM05D001459 ORTHO05D001359 8.0e-28 127.9 168 47.6
Glyma.02G058800 Glycine max HOM05D001459 ORTHO05D001359 8.0e-28 127.9 138 48.6
Lj4C197T2 Lonicera japonica HOM05D001459 ORTHO05D001359 8.0e-28 127.9 136 53.7
AUR62003183 Chenopodium quinoa HOM05D001459 ORTHO05D001359 1.1e-27 127.5 136 53.7
arahy.Tifrunner.gnm1.ann1.AVA03Z Arachis hypogaea HOM05D001459 ORTHO05D001359 1.8e-27 126.7 132 51.5
FvH4_1g13880 Fragaria vesca HOM05D001459 ORTHO05D001359 1.8e-27 126.7 123 52.8
FAN19G1027 Fragaria x ananassa HOM05D001459 ORTHO05D001359 1.8e-27 126.7 123 52.8
FAN28G1442 Fragaria x ananassa HOM05D001459 ORTHO05D001359 1.8e-27 126.7 123 52.8
AUR62008004 Chenopodium quinoa HOM05D001459 ORTHO05D001359 2.3e-27 126.3 172 45.9
Gorai.007G205700 Gossypium raimondii HOM05D001459 ORTHO05D001359 2.3e-27 126.3 110 58.2
FAN23G1882 Fragaria x ananassa HOM05D001459 ORTHO05D001359 3.1e-27 125.9 123 52.8
ECA232G3366 Erigeron canadensis HOM05D001459 ORTHO05D001359 4.0e-27 125.6 151 47.7
Sopen02g030280 Solanum pennellii HOM05D001459 ORTHO05D001359 5.2e-27 125.2 167 45.5
arahy.Tifrunner.gnm1.ann1.J541GW Arachis hypogaea HOM05D001459 ORTHO05D001359 6.8e-27 124.8 132 50.8
Ca_26385_v3 Cicer arietinum L. HOM05D001459 ORTHO05D001359 2.0e-26 123.2 127 50.4
Gohir.A11G186100 Gossypium hirsutum HOM05D001459 ORTHO05D001359 2.0e-26 123.2 110 57.3
HanXRQChr11g0338871 Helianthus annuus HOM05D001459 ORTHO05D001359 2.6e-26 122.9 125 52.8
THA.LOC104807546 Tarenaya hassleriana HOM05D001459 ORTHO05D001359 2.6e-26 122.9 166 42.2
Peaxi162Scf00427g00516 Petunia axillaris HOM05D001459 ORTHO05D001359 3.4e-26 122.5 172 45.9
TPR.G20292 Trifolium pratense HOM05D001459 ORTHO05D001359 7.5e-26 121.3 130 46.9
Migut.L00297 Erythranthe guttata HOM05D001459 ORTHO05D001359 1.3e-25 120.6 125 51.2
Medtr8g077950 Medicago truncatula HOM05D001459 ORTHO05D001359 1.7e-25 120.2 135 47.4
GSVIVG01009665001 Vitis vinifera HOM05D001459 ORTHO05D001359 2.9e-25 119.4 134 48.5
Migut.H00187 Erythranthe guttata HOM05D001459 ORTHO05D001359 3.7e-25 119.0 195 41.5
Nitab4.5_0001279g0170 Nicotiana tabacum HOM05D001459 ORTHO05D001359 3.7e-25 119.0 171 43.3
ECA246G3405 Erigeron canadensis HOM05D001788 ORTHO05D006995 4.9e-25 118.6 122 50.0
THA.LOC104819800 Tarenaya hassleriana HOM05D001459 ORTHO05D001359 4.9e-25 118.6 133 45.9
CSS0014466 Camellia sinensis var. sinensis HOM05D001459 ORTHO05D001359 8.3e-25 117.9 96 65.6
Duzib187G0107 Durio zibethinus HOM05D001459 ORTHO05D001359 8.3e-25 117.9 111 54.1
Thhalv10025733m.g Eutrema salsugineum HOM05D001459 ORTHO05D001359 8.3e-25 117.9 167 40.7
Psat4g091720 Pisum sativum HOM05D001459 ORTHO05D001359 8.3e-25 117.9 133 45.9
MSTRG.2753 Avicennia marina HOM05D001459 ORTHO05D001359 1.1e-24 117.5 137 50.4
Cc07_g09170 Coffea canephora HOM05D001459 ORTHO05D001359 1.4e-24 117.1 122 52.5
Hma1.2p1_3707F.1_g337320 Hydrangea macrophylla HOM05D001459 ORTHO05D001359 1.4e-24 117.1 144 45.1
Sp7g34390 Schrenkiella parvula HOM05D001459 ORTHO05D001359 1.4e-24 117.1 167 40.7
AT4G36730 Arabidopsis thaliana HOM05D001459 ORTHO05D001359 1.9e-24 116.7 167 39.5
Gohir.D12G065600 Gossypium hirsutum HOM05D001459 ORTHO05D001359 1.9e-24 116.7 121 50.4
Duzib264G0166 Durio zibethinus HOM05D001459 ORTHO05D001359 2.4e-24 116.3 128 49.2
Lj2g0001412 Lotus japonicus HOM05D001459 ORTHO05D001359 3.2e-24 115.9 134 50.0
Hma1.2p1_1228F.1_g268620 Hydrangea macrophylla HOM05D001459 ORTHO05D001359 4.1e-24 115.5 121 52.1
Nitab4.5_0002128g0040 Nicotiana tabacum HOM05D001459 ORTHO05D001359 4.1e-24 115.5 172 43.6
SGA_v2.0_scaffold33G13393 Striga asiatica HOM05D001459 ORTHO05D001359 4.1e-24 115.5 138 48.6
EL10Ac6g14910 Beta vulgaris HOM05D001459 ORTHO05D001359 5.4e-24 115.2 124 53.2
CARHR245080 Cardamine hirsuta HOM05D001459 ORTHO05D001359 5.4e-24 115.2 175 38.9
BcaC01g00445 Brassica carinata HOM05D001459 ORTHO05D001359 7.0e-24 114.8 140 42.9
C03p79920 Brassica napus HOM05D001459 ORTHO05D001359 7.0e-24 114.8 140 42.9
Sed0024040 Sechium edule HOM05D001459 ORTHO05D001359 7.0e-24 114.8 151 45.7
HanXRQChr03g0069071 Helianthus annuus HOM05D001459 ORTHO05D001359 9.2e-24 114.4 135 50.4
A08p22380 Brassica napus HOM05D001459 ORTHO05D001359 1.2e-23 114.0 167 39.5
BraA08t34195Z Brassica rapa HOM05D001459 ORTHO05D001359 1.2e-23 114.0 167 39.5
Gorai.008G068900 Gossypium raimondii HOM05D001459 ORTHO05D001359 1.2e-23 114.0 122 50.8
Sed0015500 Sechium edule HOM05D001459 ORTHO05D001359 1.2e-23 114.0 137 46.0
Gohir.A12G065466 Gossypium hirsutum HOM05D001459 ORTHO05D001359 1.6e-23 113.6 122 50.8
Hma1.2p1_0652F.1_g195860 Hydrangea macrophylla HOM05D001459 ORTHO05D001359 2.1e-23 113.2 105 55.2
Carub.0007s0359 Capsella rubella HOM05D001459 ORTHO05D001359 3.5e-23 112.5 174 39.7
Hund16578 Selenicereus undatus HOM05D001459 ORTHO05D001359 3.5e-23 112.5 124 52.4
BolC3t20245H Brassica oleracea HOM05D001459 ORTHO05D001359 4.6e-23 112.1 167 38.3
BcaNung00705 Brassica carinata HOM05D001459 ORTHO05D001359 6.0e-23 111.7 166 39.2
C01p02370 Brassica napus HOM05D001459 ORTHO05D001359 6.0e-23 111.7 166 39.2
PGSC0003DMG400012660 Solanum tuberosum HOM05D001459 ORTHO05D001359 6.0e-23 111.7 139 48.2
BolC1t00228H Brassica oleracea HOM05D001459 ORTHO05D001359 7.8e-23 111.3 166 39.2
AL7G14280 Arabidopsis lyrata HOM05D001459 ORTHO05D001359 1.7e-22 110.2 167 37.7
BcaB03g12373 Brassica carinata HOM05D001459 ORTHO05D001359 3.0e-22 109.4 119 47.1
BraA01t00207Z Brassica rapa HOM05D001459 ORTHO05D001359 3.0e-22 109.4 167 39.5
Glyma.01G177400 Glycine max HOM05D001459 ORTHO05D001359 3.9e-22 109.0 133 48.1
Nn1g05081 Nelumbo nucifera HOM05D001459 ORTHO05D001359 6.6e-22 108.2 125 48.8
A01p02180 Brassica napus HOM05D001459 ORTHO05D001359 8.6e-22 107.8 167 38.9
MSTRG.15280 Avicennia marina HOM05D001459 ORTHO05D001359 2.5e-21 106.3 137 47.4
TAR625G0297 Trochodendron aralioides HOM05D001459 ORTHO05D001359 4.3e-21 105.5 119 47.1
Hma1.2p1_0203F.1_g086580 Hydrangea macrophylla HOM05D001459 ORTHO05D001359 3.6e-20 102.4 141 46.1
Oeu037894.1 Olea europaea HOM05D001459 ORTHO05D001359 1.4e-19 100.5 92 54.3
BcaNung04435 Brassica carinata HOM05D001459 ORTHO05D001359 2.3e-19 99.8 167 38.9
Aa31LG6G13540 Aethionema arabicum HOM05D001459 ORTHO05D001359 4.0e-19 99.0 171 36.3
DCAR_025934 Daucus carota HOM05D001459 ORTHO05D001359 1.5e-18 97.1 120 46.7
Glyma.11G065000 Glycine max HOM05D001459 ORTHO05D001359 2.0e-18 96.7 131 44.3
Sc03g0000900 Simmondsia chinensis HOM05D001459 ORTHO05D001359 2.0e-18 96.7 153 42.5
Lalb_Chr09g0333611 Lupinus albus HOM05D001459 ORTHO05D001359 2.6e-18 96.3 138 41.3
Cfa002344 Carpinus fangiana HOM05D000705 ORTHO05D004052 4.4e-18 95.5 163 42.3
HanXRQChr11g0324881 Helianthus annuus HOM05D001459 ORTHO05D001359 5.8e-18 95.1 134 41.0
Nn5g29526 Nelumbo nucifera HOM05D001459 ORTHO05D001359 7.5e-18 94.7 124 46.0
Nn5g29527 Nelumbo nucifera HOM05D001459 ORTHO05D001359 7.5e-18 94.7 124 46.0
TAR381G1105 Trochodendron aralioides HOM05D001459 ORTHO05D001359 7.5e-18 94.7 89 52.8
PSO700G0112 Papaver somniferum HOM05D001459 ORTHO05D001359 1.3e-17 94.0 131 45.0
Lsat_1_v5_gn_3_78600 Lactuca sativa HOM05D001459 ORTHO05D001359 2.2e-17 93.2 99 49.5
Rhsim08G0112800 Rhododendron simsii HOM05D001788 ORTHO05D006995 2.9e-17 92.8 98 50.0
CSS0014012 Camellia sinensis var. sinensis HOM05D001459 ORTHO05D001359 4.9e-17 92.0 122 48.4
PSO170G2342 Papaver somniferum HOM05D001459 ORTHO05D001359 6.4e-17 91.7 131 45.0
ECA238G4073 Erigeron canadensis HOM05D001459 ORTHO05D001359 3.5e-15 85.9 133 42.1
Ah.03g139290 Amaranthus hybridus HOM05D001459 ORTHO05D001359 3.0e-14 82.8 101 46.5
Aa31LG8G15490 Aethionema arabicum HOM05D001459 ORTHO05D001359 1.5e-13 80.5 151 39.1
ATR0733G172 Amborella trichopoda HOM05D001459 ORTHO05D001359 4.3e-13 79.0 137 43.8
Aqoxy5G01683 Aquilegia oxysepala HOM05D001459 ORTHO05D001359 7.3e-13 78.2 174 33.9
Lsat_1_v5_gn_4_153461 Lactuca sativa HOM05D001459 ORTHO05D001359 1.6e-12 77.0 174 35.6
CSS0021144 Camellia sinensis var. sinensis HOM05D001459 ORTHO05D001359 3.6e-12 75.9 136 36.0
MBI16_g35703_MAGBIO Magnolia biondii HOM05D001459 ORTHO05D001359 1.4e-11 73.9 93 47.3
MELO3C029218.2 Cucumis melo HOM05D040423 ORTHO05D001359 1.8e-11 73.6 101 44.6
SEGI_12461 Sequoiadendron giganteum HOM05D001459 ORTHO05D001359 3.1e-11 72.8 82 52.4
Cfa023509 Carpinus fangiana HOM05D000705 ORTHO05D001359 5.2e-11 72.0 41 87.8
CDE04G0505 Ceratophyllum demersum HOM05D001459 ORTHO05D001359 8.9e-11 71.2 178 32.6
HanXRQChr17g0563711 Helianthus annuus HOM05D001459 ORTHO05D001359 8.9e-11 71.2 148 38.5
Dinv26807 Davidia involucrata HOM05D000088 ORTHO05D001217 4.4e-10 68.9 126 40.5
TAR628G0378 Trochodendron aralioides HOM05D001459 ORTHO05D001359 9.9e-10 67.8 108 39.8
MELO3C032216.2 Cucumis melo HOM05D001459 ORTHO05D001359 1.3e-09 67.4 77 50.6
Solyc02g085610.4 Solanum lycopersicum HOM05D001459 ORTHO05D001359 1.7e-09 67.0 103 40.8
MBI07_g11396_MAGBIO Magnolia biondii HOM05D002964 ORTHO05D003498 2.2e-09 66.6 173 32.9
MBI19_g32495_MAGBIO Magnolia biondii HOM05D001459 ORTHO05D001359 3.8e-09 65.9 106 41.5
unitig_88.g27807 Utricularia gibba HOM05D001459 ORTHO05D001359 3.8e-09 65.9 177 32.2
GSVIVG01027040001 Vitis vinifera HOM05D002964 ORTHO05D003498 4.9e-09 65.5 97 42.3
QL04p059655 Quercus lobata HOM05D002964 ORTHO05D003498 6.4e-09 65.1 211 30.3
Nitab4.5_0000628g0080 Nicotiana tabacum HOM05D001459 ORTHO05D001359 4.2e-08 62.4 53 52.8
Sc13g0009500 Simmondsia chinensis HOM05D002964 ORTHO05D003498 5.4e-08 62.0 170 31.2
Hund27724 Selenicereus undatus HOM05D002964 ORTHO05D003498 7.1e-08 61.6 173 30.6
Hund27737 Selenicereus undatus HOM05D002964 ORTHO05D003498 7.1e-08 61.6 173 30.6
Glyma.19G252600 Glycine max HOM05D002964 ORTHO05D003498 9.3e-08 61.2 172 32.0
Glyma.03G255000 Glycine max HOM05D002964 ORTHO05D003498 1.2e-07 60.8 172 32.6
MBI19_g41117_MAGBIO Magnolia biondii HOM05D001459 ORTHO05D001359 1.2e-07 60.8 101 40.6
Phvul.006G109700 Phaseolus vulgaris HOM05D002964 ORTHO05D003498 2.1e-07 60.1 170 35.9
Aqoxy7G00219 Aquilegia oxysepala HOM05D002964 ORTHO05D003498 2.7e-07 59.7 90 40.0
AUR62023507 Chenopodium quinoa HOM05D002964 ORTHO05D003498 7.8e-07 58.2 139 30.9
CiPaw.01G071000 Carya illinoinensis HOM05D002964 ORTHO05D003498 1.3e-06 57.4 75 41.3
Duzib138G1760 Durio zibethinus HOM05D002964 ORTHO05D003498 1.3e-06 57.4 168 31.5
Migut.B01828 Erythranthe guttata HOM05D002964 ORTHO05D003498 1.7e-06 57.0 128 34.4
HanXRQChr17g0562621 Helianthus annuus HOM05D002964 ORTHO05D003498 2.3e-06 56.6 123 35.0
BcaB01g03232 Brassica carinata HOM05D002964 ORTHO05D003498 3.9e-06 55.8 140 34.3
BcaC01g05084 Brassica carinata HOM05D002964 ORTHO05D003498 8.7e-06 54.7 101 38.6
BcaC01g05086 Brassica carinata HOM05D002964 ORTHO05D003498 8.7e-06 54.7 100 39.0
BcaC05g27242 Brassica carinata HOM05D001459 ORTHO05D001359 8.7e-06 54.7 193 28.5
AUR62004443 Chenopodium quinoa HOM05D002964 ORTHO05D003498 8.7e-06 54.7 92 37.0
Os05g0569300 Oryza sativa ssp. japonica HOM05D002964 ORTHO05D003498 8.7e-06 54.7 107 35.5


User provided reference genes

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