Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa010043 Carpinus fangiana HOM05D006704 ORTHO05D008635 6.7e-38 161.0 75 100.0
Cfa010042 Carpinus fangiana HOM05D006704 ORTHO05D008635 1.7e-25 119.8 57 98.2
Haze_23402 Corylus avellana HOM05D006704 ORTHO05D008635 4.2e-24 115.2 57 93.0
CiPaw.13G137600 Carya illinoinensis HOM05D006704 ORTHO05D008635 6.1e-23 111.3 57 89.5
MD03G1142000 Malus domestica HOM05D006704 ORTHO05D008635 8.8e-22 107.5 54 90.7
RcHm_v2.0_Chr5g0044201 Rosa chinensis HOM05D006704 ORTHO05D008635 1.5e-21 106.7 53 92.5
FvH4_3g24630 Fragaria vesca HOM05D006704 ORTHO05D008635 3.4e-21 105.5 54 88.9
Potri.004G184400 Populus trichocarpa HOM05D006704 ORTHO05D008635 7.5e-21 104.4 50 96.0
Medtr4g053410 Medicago truncatula HOM05D006704 ORTHO05D008635 1.3e-20 103.6 53 88.7
TPR.G17210 Trifolium pratense HOM05D006704 ORTHO05D008635 1.3e-20 103.6 54 85.2
Glyma.11G184500 Glycine max HOM05D006704 ORTHO05D008635 2.2e-20 102.8 49 95.9
Manes.11G160500 Manihot esculenta HOM05D006704 ORTHO05D008635 2.2e-20 102.8 52 90.4
QL01p012560 Quercus lobata HOM05D006704 ORTHO05D008635 2.2e-20 102.8 57 84.2
Lj3g0010910 Lotus japonicus HOM05D006704 ORTHO05D008635 2.8e-20 102.4 57 80.7
Thecc.09G286000 Theobroma cacao HOM05D006704 ORTHO05D008635 2.8e-20 102.4 52 90.4
CANSAT54G0988 Cannabis sativa HOM05D006704 ORTHO05D008635 3.7e-20 102.1 54 85.2
Ciclev10028571m.g Citrus clementina HOM05D006704 ORTHO05D008635 3.7e-20 102.1 57 84.2
Psat7g188440 Pisum sativum HOM05D006704 ORTHO05D008635 3.7e-20 102.1 53 86.8
Glyma.12G087800 Glycine max HOM05D006704 ORTHO05D008635 4.8e-20 101.7 49 93.9
Gohir.A05G081700 Gossypium hirsutum HOM05D006704 ORTHO05D008635 4.8e-20 101.7 52 88.5
Gohir.D05G084700 Gossypium hirsutum HOM05D006704 ORTHO05D008635 4.8e-20 101.7 52 88.5
Gorai.009G086600 Gossypium raimondii HOM05D006704 ORTHO05D008635 4.8e-20 101.7 52 88.5
Oeu031485.1 Olea europaea HOM05D006704 ORTHO05D008635 6.3e-20 101.3 50 92.0
GSVIVG01036154001 Vitis vinifera HOM05D006704 ORTHO05D008635 6.3e-20 101.3 49 93.9
Duzib170G0143 Durio zibethinus HOM05D006704 ORTHO05D008635 8.3e-20 100.9 52 88.5
Actinidia07237 Actinidia chinensis HOM05D006704 ORTHO05D008635 1.1e-19 100.5 51 88.2
arahy.Tifrunner.gnm1.ann1.GMPU9C Arachis hypogaea HOM05D006704 ORTHO05D008635 1.1e-19 100.5 57 82.5
Eucgr.I00893 Eucalyptus grandis HOM05D006704 ORTHO05D008635 1.1e-19 100.5 55 85.5
Sabra04G0124100 Salix brachista HOM05D006704 ORTHO05D008635 1.1e-19 100.5 50 92.0
TAR633G0569 Trochodendron aralioides HOM05D006704 ORTHO05D008635 1.1e-19 100.5 58 82.8
arahy.Tifrunner.gnm1.ann1.JHI8LQ Arachis hypogaea HOM05D006704 ORTHO05D008635 1.4e-19 100.1 49 93.9
Cc01_g09380 Coffea canephora HOM05D006704 ORTHO05D008635 1.4e-19 100.1 49 91.8
COL.COLO4_19912 Corchorus olitorius HOM05D006704 ORTHO05D008635 1.4e-19 100.1 52 88.5
TWI31G0547 Tripterygium wilfordii HOM05D006704 ORTHO05D008635 1.4e-19 100.1 49 91.8
vmacro03306 Vaccinium macrocarpon HOM05D006704 ORTHO05D008635 1.4e-19 100.1 49 93.9
Lalb_Chr03g0028021 Lupinus albus HOM05D006704 ORTHO05D008635 1.8e-19 99.8 52 88.5
BcaC02g08239 Brassica carinata HOM05D006704 ORTHO05D008635 2.4e-19 99.4 52 86.5
A04p21040 Brassica napus HOM05D006704 ORTHO05D008635 2.4e-19 99.4 52 86.5
C04p56860 Brassica napus HOM05D006704 ORTHO05D008635 2.4e-19 99.4 52 86.5
BraA04t17672Z Brassica rapa HOM05D006704 ORTHO05D008635 2.4e-19 99.4 52 86.5
Ca_19394_v3 Cicer arietinum L. HOM05D006704 ORTHO05D008635 2.4e-19 99.4 49 91.8
Atru.chr3.3296 Acer truncatum HOM05D006704 ORTHO05D008635 4.1e-19 98.6 49 93.9
CSS0007169 Camellia sinensis var. sinensis HOM05D006704 ORTHO05D008635 4.1e-19 98.6 49 91.8
CSS0018673 Camellia sinensis var. sinensis HOM05D006704 ORTHO05D008635 4.1e-19 98.6 49 91.8
Dinv29464 Davidia involucrata HOM05D006704 ORTHO05D008635 4.1e-19 98.6 49 91.8
VMungo1127G0699 Vigna mungo HOM05D006704 ORTHO05D008635 4.1e-19 98.6 50 90.0
Nn6g34957 Nelumbo nucifera HOM05D006704 ORTHO05D008635 5.4e-19 98.2 49 91.8
Cpa.g.sc32.105 Carica papaya HOM05D006704 ORTHO05D008635 7.0e-19 97.8 50 90.0
Aa31LG5G8320 Aethionema arabicum HOM05D006704 ORTHO05D008635 9.1e-19 97.4 49 89.8
Aqoxy2G01240 Aquilegia oxysepala HOM05D006704 ORTHO05D008635 9.1e-19 97.4 49 87.8
AL4G22810 Arabidopsis lyrata HOM05D006704 ORTHO05D008635 9.1e-19 97.4 49 89.8
BcaB06g28156 Brassica carinata HOM05D006704 ORTHO05D008635 9.1e-19 97.4 49 89.8
BolC4t27219H Brassica oleracea HOM05D006704 ORTHO05D008635 9.1e-19 97.4 49 89.8
Thhalv10016700m.g Eutrema salsugineum HOM05D006704 ORTHO05D008635 9.1e-19 97.4 49 89.8
Phvul.011G092800 Phaseolus vulgaris HOM05D006704 ORTHO05D008635 9.1e-19 97.4 50 88.0
Sp4g10410 Schrenkiella parvula HOM05D006704 ORTHO05D008635 9.1e-19 97.4 49 89.8
MSTRG.18751 Avicennia marina HOM05D006704 ORTHO05D008635 1.2e-18 97.1 49 89.8
CARHR121470 Cardamine hirsuta HOM05D006704 ORTHO05D008635 1.2e-18 97.1 49 89.8
Rhsim13G0110100 Rhododendron simsii HOM05D006704 ORTHO05D008635 1.6e-18 96.7 49 89.8
unitig_37.g12893 Utricularia gibba HOM05D006704 ORTHO05D008635 1.6e-18 96.7 49 89.8
AT2G27590 Arabidopsis thaliana HOM05D006704 ORTHO05D008635 2.7e-18 95.9 49 87.8
Hma1.2p1_0305F.1_g119660 Hydrangea macrophylla HOM05D006704 ORTHO05D008635 2.7e-18 95.9 48 89.6
Hma1.2p1_0305F.1_g119670 Hydrangea macrophylla HOM05D006704 ORTHO05D008635 2.7e-18 95.9 48 89.6
PGSC0003DMG400007144 Solanum tuberosum HOM05D006704 ORTHO05D008635 2.7e-18 95.9 49 87.8
Carub.0004s0825 Capsella rubella HOM05D006704 ORTHO05D008635 3.5e-18 95.5 49 87.8
SalBow6G4963 Salvia bowleyana HOM05D006704 ORTHO05D008635 4.5e-18 95.1 48 89.6
Ah.08g215840 Amaranthus hybridus HOM05D006704 ORTHO05D008635 5.9e-18 94.7 48 89.6
EL10Ac7g15806 Beta vulgaris HOM05D006704 ORTHO05D008635 5.9e-18 94.7 48 89.6
MBI17_g08127_MAGBIO Magnolia biondii HOM05D006704 ORTHO05D008635 5.9e-18 94.7 50 84.0
Hund20877 Selenicereus undatus HOM05D006704 ORTHO05D008635 5.9e-18 94.7 48 89.6
Solyc06g074380.3 Solanum lycopersicum HOM05D006704 ORTHO05D008635 5.9e-18 94.7 53 79.2
Sopen06g030840 Solanum pennellii HOM05D006704 ORTHO05D008635 5.9e-18 94.7 53 79.2
DCAR_006157 Daucus carota HOM05D006704 ORTHO05D008635 7.7e-18 94.4 48 87.5
PGR119G0959 Punica granatum HOM05D006704 ORTHO05D008635 7.7e-18 94.4 49 87.8
ClCG01G012900 Citrullus lanatus HOM05D006704 ORTHO05D008635 1.0e-17 94.0 49 85.7
MELO3C004818.2 Cucumis melo HOM05D006704 ORTHO05D008635 1.0e-17 94.0 49 85.7
CsaV3_1G014420 Cucumis sativus L. HOM05D006704 ORTHO05D008635 1.0e-17 94.0 49 85.7
SGA_v2.0_scaffold22G09877 Striga asiatica HOM05D006704 ORTHO05D008635 1.0e-17 94.0 48 87.5
Os01g0858700 Oryza sativa ssp. japonica HOM05D006704 ORTHO05D008635 1.3e-17 93.6 59 76.3
AUR62009778 Chenopodium quinoa HOM05D006704 ORTHO05D008635 1.7e-17 93.2 50 84.0
Migut.D02353 Erythranthe guttata HOM05D006704 ORTHO05D008635 1.7e-17 93.2 48 87.5
Zm00001eb147310 Zea mays HOM05D006704 ORTHO05D008635 1.7e-17 93.2 48 89.6
AUR62039223 Chenopodium quinoa HOM05D006704 ORTHO05D008635 2.3e-17 92.8 50 84.0
HanXRQChr12g0364591 Helianthus annuus HOM05D006704 ORTHO05D008635 2.3e-17 92.8 48 87.5
Lsat_1_v5_gn_6_40481 Lactuca sativa HOM05D006704 ORTHO05D008635 2.3e-17 92.8 48 87.5
Sed0027356 Sechium edule HOM05D006704 ORTHO05D008635 2.3e-17 92.8 49 85.7
PSO339G4200 Papaver somniferum HOM05D006704 ORTHO05D008635 2.9e-17 92.4 47 89.4
PSO384G3226 Papaver somniferum HOM05D006704 ORTHO05D008635 2.9e-17 92.4 47 89.4
CDE06G2417 Ceratophyllum demersum HOM05D006704 ORTHO05D008635 3.8e-17 92.0 48 85.4
THA.LOC104800539 Tarenaya hassleriana HOM05D006704 ORTHO05D008635 6.5e-17 91.3 58 77.6
ECA233G1041 Erigeron canadensis HOM05D006704 ORTHO05D008635 1.1e-16 90.5 48 85.4
CAN.G919.21 Capsicum annuum HOM05D006704 ORTHO05D008635 9.5e-16 87.4 49 83.7
SEGI_14445 Sequoiadendron giganteum HOM05D006704 ORTHO05D008635 9.5e-16 87.4 49 83.7
SEGI_32150 Sequoiadendron giganteum HOM05D006704 ORTHO05D008635 9.5e-16 87.4 49 83.7
HPP92_000003 Vanilla planifolia HOM05D006704 ORTHO05D008635 3.6e-15 85.5 46 87.0
Nitab4.5_0002002g0020 Nicotiana tabacum HOM05D006704 ORTHO05D008635 1.4e-14 83.6 70 61.4
Mapoly0047s0027 Marchantia polymorpha HOM05D006704 ORTHO05D008635 2.0e-13 79.7 45 77.8
Nitab4.5_0015718g0010 Nicotiana tabacum HOM05D006704 ORTHO05D008635 2.6e-13 79.3 75 56.0
FAN11G2081 Fragaria x ananassa HOM05D006704 ORTHO05D008635 3.7e-12 75.5 37 89.2
AagrBONN_evm.TU.Sc2ySwM_228.5549 Anthoceros agrestis HOM05D006704 ORTHO05D008635 6.3e-12 74.7 42 78.6
Actinidia24205 Actinidia chinensis HOM05D006704 ORTHO05D008635 1.4e-11 73.6 38 81.6
Nitab4.5_0002002g0030 Nicotiana tabacum HOM05D006704 ORTHO05D008635 1.4e-11 73.6 38 84.2
FAN21G3586 Fragaria x ananassa HOM05D006704 ORTHO05D008635 2.4e-11 72.8 35 91.4
ATR0820G138 Amborella trichopoda HOM05D006704 ORTHO05D008635 1.2e-10 70.5 37 81.1
VMungo0464G0466 Vigna mungo HOM05D006704 ORTHO05D000044 2.7e-10 69.3 87 48.3
SMO079G0003 Selaginella moellendorffii HOM05D006704 ORTHO05D008635 5.9e-10 68.2 38 68.4
SMO200G0095 Selaginella moellendorffii HOM05D006704 ORTHO05D008635 5.9e-10 68.2 38 68.4
Peaxi162Scf00091g00118 Petunia axillaris HOM05D006704 ORTHO05D008635 1.9e-08 63.2 49 65.3
MD03G1142200 Malus domestica HOM05D006704 ORTHO05D008635 7.3e-08 61.2 34 82.4


User provided reference genes

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