Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa010007 Carpinus fangiana HOM05D004934 ORTHO05D005924 2.5e-54 215.3 119 100.0
QL01p012137 Quercus lobata HOM05D004934 ORTHO05D005924 9.9e-43 176.8 118 81.4
CiPaw.14G099500 Carya illinoinensis HOM05D004934 ORTHO05D005924 8.4e-42 173.7 119 82.4
Thecc.09G281300 Theobroma cacao HOM05D004934 ORTHO05D005924 5.4e-41 171.0 119 75.6
MD11G1166100 Malus domestica HOM05D004934 ORTHO05D005924 3.5e-40 168.3 115 82.6
PGR102G3359 Punica granatum HOM05D004934 ORTHO05D005924 3.9e-39 164.9 115 78.3
FvH4_5g26820 Fragaria vesca HOM05D004934 ORTHO05D005924 5.1e-39 164.5 119 74.8
FAN04G2654 Fragaria x ananassa HOM05D004934 ORTHO05D005924 5.1e-39 164.5 119 74.8
Manes.04G003100 Manihot esculenta HOM05D004934 ORTHO05D005924 6.7e-39 164.1 121 76.0
Prupe.6G131900 Prunus persica HOM05D004934 ORTHO05D005924 1.5e-38 162.9 119 75.6
Duzib168G1921 Durio zibethinus HOM05D004934 ORTHO05D005924 1.9e-38 162.5 119 72.3
FAN13G2036 Fragaria x ananassa HOM05D004934 ORTHO05D005924 1.9e-38 162.5 119 73.9
Gohir.D08G015900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 7.4e-38 160.6 120 73.3
Gorai.004G010200 Gossypium raimondii HOM05D004934 ORTHO05D005924 1.3e-37 159.8 120 72.5
Medtr4g052910 Medicago truncatula HOM05D004934 ORTHO05D005924 3.7e-37 158.3 120 74.2
RcHm_v2.0_Chr5g0045641 Rosa chinensis HOM05D004934 ORTHO05D005924 2.4e-36 155.6 119 73.9
TWI31G0143 Tripterygium wilfordii HOM05D004934 ORTHO05D005924 5.3e-36 154.5 121 71.9
Ciclev10029605m.g Citrus clementina HOM05D004934 ORTHO05D005924 9.0e-36 153.7 119 73.9
Gohir.A08G005600 Gossypium hirsutum HOM05D004934 ORTHO05D005924 9.0e-36 153.7 120 70.8
THA.LOC104800543 Tarenaya hassleriana HOM05D004934 ORTHO05D005924 1.5e-35 152.9 120 70.0
arahy.Tifrunner.gnm1.ann1.Q13MWU Arachis hypogaea HOM05D004934 ORTHO05D005924 4.5e-35 151.4 121 72.7
arahy.Tifrunner.gnm1.ann1.Q2H7V9 Arachis hypogaea HOM05D004934 ORTHO05D005924 4.5e-35 151.4 121 72.7
TAR633G0561 Trochodendron aralioides HOM05D004934 ORTHO05D005924 4.5e-35 151.4 120 73.3
GSVIVG01036114001 Vitis vinifera HOM05D004934 ORTHO05D005924 4.5e-35 151.4 118 72.0
Glyma.12G090500 Glycine max HOM05D004934 ORTHO05D005924 5.8e-35 151.0 121 71.9
ClCG01G011970 Citrullus lanatus HOM05D004934 ORTHO05D005924 1.0e-34 150.2 114 73.7
Lalb_Chr01g0004881 Lupinus albus HOM05D004934 ORTHO05D005924 1.0e-34 150.2 121 72.7
Dinv42546 Davidia involucrata HOM05D004934 ORTHO05D005924 2.2e-34 149.1 122 73.0
Lalb_Chr03g0028151 Lupinus albus HOM05D004934 ORTHO05D005924 2.2e-34 149.1 122 73.0
Ca_19413_v3 Cicer arietinum L. HOM05D004934 ORTHO05D005924 2.9e-34 148.7 120 71.7
TPR.G17236 Trifolium pratense HOM05D004934 ORTHO05D005924 2.9e-34 148.7 122 73.0
Dinv22836 Davidia involucrata HOM05D004934 ORTHO05D005924 3.8e-34 148.3 121 74.4
MD03G1147400 Malus domestica HOM05D004934 ORTHO05D005924 6.5e-34 147.5 115 75.7
Sed0020870 Sechium edule HOM05D004934 ORTHO05D005924 6.5e-34 147.5 119 69.7
Glyma.11G182300 Glycine max HOM05D004934 ORTHO05D005924 8.4e-34 147.1 121 71.1
VMungo1127G1656 Vigna mungo HOM05D004934 ORTHO05D005924 1.4e-33 146.4 121 70.2
Nn2g14177 Nelumbo nucifera HOM05D004934 ORTHO05D005924 1.9e-33 146.0 120 71.7
Hund18761 Selenicereus undatus HOM05D004934 ORTHO05D005924 4.2e-33 144.8 120 70.0
Gohir.A09G096200 Gossypium hirsutum HOM05D004934 ORTHO05D005924 5.5e-33 144.4 116 69.8
MSTRG.17705 Avicennia marina HOM05D004934 ORTHO05D005924 7.1e-33 144.1 122 69.7
Actinidia35468 Actinidia chinensis HOM05D004934 ORTHO05D005924 9.3e-33 143.7 122 69.7
Gohir.D09G095900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 1.2e-32 143.3 116 69.0
Lj3g0027260 Lotus japonicus HOM05D004934 ORTHO05D005924 1.2e-32 143.3 121 68.6
Phvul.011G095100 Phaseolus vulgaris HOM05D004934 ORTHO05D005924 1.2e-32 143.3 121 69.4
Cc01_g09040 Coffea canephora HOM05D004934 ORTHO05D005924 1.6e-32 142.9 116 73.3
Hma1.2p1_0587F.1_g184270 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 2.1e-32 142.5 116 69.8
Sabra04G0136300 Salix brachista HOM05D004934 ORTHO05D005924 2.1e-32 142.5 120 67.5
Sabra09G0127300 Salix brachista HOM05D004934 ORTHO05D005924 2.7e-32 142.1 120 70.0
Duzib170G0221 Durio zibethinus HOM05D004934 ORTHO05D005924 3.5e-32 141.7 119 67.2
RcHm_v2.0_Chr5g0046361 Rosa chinensis HOM05D004934 ORTHO05D005924 4.6e-32 141.4 127 66.9
ATR0609G030 Amborella trichopoda HOM05D004934 ORTHO05D005924 6.0e-32 141.0 120 67.5
CsaV3_1G014900 Cucumis sativus L. HOM05D004934 ORTHO05D005924 1.0e-31 140.2 120 67.5
Eucgr.B03844 Eucalyptus grandis HOM05D004934 ORTHO05D005924 1.0e-31 140.2 120 70.8
Potri.009G163100 Populus trichocarpa HOM05D004934 ORTHO05D005924 1.0e-31 140.2 112 71.4
Sc06g0008770 Simmondsia chinensis HOM05D004934 ORTHO05D005924 1.0e-31 140.2 120 70.0
Oeu031471.1 Olea europaea HOM05D004934 ORTHO05D005924 5.1e-31 137.9 122 67.2
Aqoxy4G02760 Aquilegia oxysepala HOM05D004934 ORTHO05D005924 8.7e-31 137.1 120 65.8
CANSAT54G1198 Cannabis sativa HOM05D004934 ORTHO05D005924 8.7e-31 137.1 128 66.4
Migut.N02487 Erythranthe guttata HOM05D004934 ORTHO05D005924 1.1e-30 136.7 120 69.2
Atru.chr3.3218 Acer truncatum HOM05D004934 ORTHO05D005924 1.5e-30 136.3 120 67.5
MSTRG.12371 Avicennia marina HOM05D004934 ORTHO05D005924 1.9e-30 136.0 117 69.2
Psat7g187720 Pisum sativum HOM05D004934 ORTHO05D005924 4.3e-30 134.8 121 66.9
vmacro14353 Vaccinium macrocarpon HOM05D004934 ORTHO05D005924 4.3e-30 134.8 116 66.4
CSS0038235 Camellia sinensis var. sinensis HOM05D004934 ORTHO05D005924 2.8e-29 132.1 105 70.5
Nitab4.5_0012586g0010 Nicotiana tabacum HOM05D004934 ORTHO05D005924 8.2e-29 130.6 122 66.4
EL10Ac7g15830 Beta vulgaris HOM05D004934 ORTHO05D005924 1.4e-28 129.8 121 66.1
Nitab4.5_0000755g0070 Nicotiana tabacum HOM05D004934 ORTHO05D005924 1.4e-28 129.8 122 66.4
Potri.004G201700 Populus trichocarpa HOM05D004934 ORTHO05D005924 1.4e-28 129.8 120 65.8
unitig_27.g25034 Utricularia gibba HOM05D004934 ORTHO05D005924 2.4e-28 129.0 115 63.5
Nitab4.5_0002914g0100 Nicotiana tabacum HOM05D004934 ORTHO05D005924 6.9e-28 127.5 121 67.8
ECA233G4139 Erigeron canadensis HOM05D004934 ORTHO05D005924 1.2e-27 126.7 120 63.3
Peaxi162Scf00040g00023 Petunia axillaris HOM05D004934 ORTHO05D005924 2.0e-27 125.9 120 63.3
PGSC0003DMG400026356 Solanum tuberosum HOM05D004934 ORTHO05D005924 3.4e-27 125.2 120 65.8
FAN11G2484 Fragaria x ananassa HOM05D004934 ORTHO05D005924 4.5e-27 124.8 119 60.5
Nitab4.5_0000227g0280 Nicotiana tabacum HOM05D004934 ORTHO05D005924 4.5e-27 124.8 120 65.8
TAR636G0935 Trochodendron aralioides HOM05D004934 ORTHO05D005924 5.8e-27 124.4 116 66.4
FvH4_3g25100 Fragaria vesca HOM05D004934 ORTHO05D005924 7.6e-27 124.0 119 60.5
Solyc11g068510.2 Solanum lycopersicum HOM05D004934 ORTHO05D005924 2.2e-26 122.5 120 65.0
Sopen11g027220 Solanum pennellii HOM05D004934 ORTHO05D005924 2.2e-26 122.5 120 65.0
AUR62036196 Chenopodium quinoa HOM05D004934 ORTHO05D005924 2.9e-26 122.1 120 60.8
Lsat_1_v5_gn_6_38900 Lactuca sativa HOM05D004934 ORTHO05D005924 2.9e-26 122.1 113 64.6
AUR62009749 Chenopodium quinoa HOM05D004934 ORTHO05D005924 1.9e-25 119.4 120 59.2
CARHR120400 Cardamine hirsuta HOM05D004934 ORTHO05D005924 7.2e-25 117.5 120 58.3
Zm00001eb369670 Zea mays HOM05D004934 ORTHO05D005924 1.2e-24 116.7 116 60.3
AL4G22570 Arabidopsis lyrata HOM05D004934 ORTHO05D005924 2.7e-24 115.5 121 59.5
AT2G27730 Arabidopsis thaliana HOM05D004934 ORTHO05D005924 2.7e-24 115.5 121 61.2
Carub.0004s0847 Capsella rubella HOM05D004934 ORTHO05D005924 2.7e-24 115.5 120 60.0
Sp4g10520 Schrenkiella parvula HOM05D004934 ORTHO05D005924 2.7e-24 115.5 124 58.9
CAN.G1524.5 Capsicum annuum HOM05D004934 ORTHO05D005924 4.6e-24 114.8 120 59.2
HanXRQChr13g0397481 Helianthus annuus HOM05D004934 ORTHO05D005924 3.9e-23 111.7 115 60.0
Aqoxy2G01124 Aquilegia oxysepala HOM05D004934 ORTHO05D005924 5.1e-23 111.3 122 59.0
Zm00001eb151060 Zea mays HOM05D004934 ORTHO05D005924 5.1e-23 111.3 116 58.6
BcaB06g28164 Brassica carinata HOM05D004934 ORTHO05D005924 6.7e-23 110.9 122 60.7
BcaC02g08235 Brassica carinata HOM05D004934 ORTHO05D005924 1.1e-22 110.2 121 56.2
A07p18350 Brassica napus HOM05D004934 ORTHO05D005924 1.1e-22 110.2 121 57.0
C04p56900 Brassica napus HOM05D004934 ORTHO05D005924 1.1e-22 110.2 121 56.2
BolC4t27225H Brassica oleracea HOM05D004934 ORTHO05D005924 1.1e-22 110.2 121 56.2
Thhalv10017451m.g Eutrema salsugineum HOM05D004934 ORTHO05D005924 1.1e-22 110.2 120 57.5
SGA_v2.0_scaffold295G47520 Striga asiatica HOM05D004934 ORTHO05D005924 2.5e-22 109.0 122 58.2
A04p21090 Brassica napus HOM05D004934 ORTHO05D005924 4.3e-22 108.2 119 56.3
BraA04t17678Z Brassica rapa HOM05D004934 ORTHO05D005924 4.3e-22 108.2 119 56.3
Aa31LG5G8260 Aethionema arabicum HOM05D004934 ORTHO05D005924 5.7e-22 107.8 120 55.0
BcaC02g10898 Brassica carinata HOM05D004934 ORTHO05D005924 1.3e-21 106.7 121 55.4
C04p23930 Brassica napus HOM05D004934 ORTHO05D005924 1.3e-21 106.7 121 55.4
BolC4t23886H Brassica oleracea HOM05D004934 ORTHO05D005924 1.3e-21 106.7 121 55.4
Rhsim13G0112500 Rhododendron simsii HOM05D004934 ORTHO05D005924 1.6e-21 106.3 156 47.4
BraA07t29551Z Brassica rapa HOM05D004934 ORTHO05D005924 2.8e-21 105.5 121 55.4
PSO339G6001 Papaver somniferum HOM05D004934 ORTHO05D005924 4.8e-21 104.8 125 51.2
PSO801G0293 Papaver somniferum HOM05D004934 ORTHO05D005924 6.3e-21 104.4 125 50.4
BcaB02g10110 Brassica carinata HOM05D004934 ORTHO05D005924 1.1e-20 103.6 121 53.7
SalBow3G2207 Salvia bowleyana HOM05D004934 ORTHO05D005924 1.8e-20 102.8 122 53.3
Peaxi162Scf00757g00422 Petunia axillaris HOM05D004934 ORTHO05D005924 5.3e-20 101.3 115 57.4
SGA_v2.0_scaffold177G39414 Striga asiatica HOM05D004934 ORTHO05D005924 9.0e-20 100.5 122 56.6
PSO339G2388 Papaver somniferum HOM05D004934 ORTHO05D005924 2.0e-19 99.4 116 57.8
FAN25G2937 Fragaria x ananassa HOM05D004934 ORTHO05D005924 2.6e-19 99.0 85 64.7
DCAR_010342 Daucus carota HOM05D004934 ORTHO05D005924 5.9e-19 97.8 90 62.2
HanXRQChr11g0324151 Helianthus annuus HOM05D004934 ORTHO05D005924 5.9e-19 97.8 126 53.2
PSO384G4162 Papaver somniferum HOM05D004934 ORTHO05D005924 1.0e-18 97.1 112 55.4
Gorai.009G084700 Gossypium raimondii HOM05D004934 ORTHO05D005924 1.3e-18 96.7 81 65.4
Oeu035567.1 Olea europaea HOM05D004934 ORTHO05D005924 2.9e-18 95.5 120 54.2
CDE12G0371 Ceratophyllum demersum HOM05D004622 ORTHO05D005431 3.8e-18 95.1 116 52.6
CDE04G1608 Ceratophyllum demersum HOM05D004934 ORTHO05D005924 5.0e-18 94.7 126 52.4
Gohir.D05G082900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 5.0e-18 94.7 81 64.2
Gohir.A05G080000 Gossypium hirsutum HOM05D004934 ORTHO05D005924 1.9e-17 92.8 81 64.2
Lsat_1_v5_gn_2_59421 Lactuca sativa HOM05D004934 ORTHO05D005924 2.5e-17 92.4 115 52.2
MBI05_g05303_MAGBIO Magnolia biondii HOM05D004934 ORTHO05D005924 9.4e-17 90.5 121 53.7
DCAR_030570 Daucus carota HOM05D004934 ORTHO05D005924 1.6e-16 89.7 69 73.9
BcaC02g10901 Brassica carinata HOM05D004934 ORTHO05D005924 2.3e-15 85.9 108 51.9
ECA238G4733 Erigeron canadensis HOM05D004934 ORTHO05D005924 9.7e-14 80.5 115 47.0
FAN21G3762 Fragaria x ananassa HOM05D004934 ORTHO05D005924 2.8e-13 79.0 78 62.8
Pp3c1_22500 Physcomitrium patens HOM05D004934 ORTHO05D005924 2.8e-13 79.0 114 46.5
Cpa.g.sc32.36 Carica papaya HOM05D004934 ORTHO05D005924 3.7e-13 78.6 75 62.7
Hma1.2p1_0587F.1_g184260 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 4.8e-13 78.2 69 62.3
Hma1.2p1_3516F.1_g336514 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 4.8e-13 78.2 69 62.3
Nn6g34871 Nelumbo nucifera HOM05D004934 ORTHO05D005924 8.2e-13 77.4 47 85.1
Zm00001eb343400 Zea mays HOM05D004934 ORTHO05D005924 1.8e-12 76.3 85 50.6
Zm00001eb416000 Zea mays HOM05D004934 ORTHO05D005924 2.4e-12 75.9 85 50.6
MELO3C004698.2 Cucumis melo HOM05D004934 ORTHO05D005924 5.3e-12 74.7 100 49.0
HPP92_003219 Vanilla planifolia HOM05D004934 ORTHO05D005924 6.9e-12 74.3 83 55.4
Os08g0559000 Oryza sativa ssp. japonica HOM05D004934 ORTHO05D005924 2.0e-11 72.8 115 42.6
Hma1.2p1_0413F.1_g147325 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 1.7e-10 69.7 70 55.7
vmacro03322 Vaccinium macrocarpon HOM05D004934 ORTHO05D005924 2.2e-10 69.3 192 32.8
Os09g0568900 Oryza sativa ssp. japonica HOM05D004934 ORTHO05D005924 8.5e-10 67.4 81 53.1
Pp3c14_2790 Physcomitrium patens HOM05D004934 ORTHO05D005924 3.0e-07 58.9 115 40.0
AagrBONN_evm.TU.Sc2ySwM_228.2259 Anthoceros agrestis HOM05D004934 ORTHO05D005924 3.9e-07 58.5 130 40.8
SEGI_07969 Sequoiadendron giganteum HOM05D004934 ORTHO05D005924 6.7e-07 57.8 43 74.4
Cpa.g.sc32.38 Carica papaya HOM05D004934 ORTHO05D005924 3.3e-06 55.5 36 80.6


User provided reference genes

Program Settings