Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa010003 Carpinus fangiana HOM05D006357 ORTHO05D007925 2.6e-98 362.1 186 100.0
CiPaw.13G134700 Carya illinoinensis HOM05D006357 ORTHO05D007925 3.1e-83 312.0 184 85.3
Haze_23361 Corylus avellana HOM05D006357 ORTHO05D007925 9.0e-83 310.5 164 96.3
Prupe.6G132700 Prunus persica HOM05D006357 ORTHO05D007925 2.3e-78 295.8 184 77.7
Phvul.011G095000 Phaseolus vulgaris HOM05D006357 ORTHO05D007925 8.7e-78 293.9 181 79.6
QL01p012073 Quercus lobata HOM05D006357 ORTHO05D007925 1.1e-77 293.5 180 80.0
Thecc.09G281200 Theobroma cacao HOM05D006357 ORTHO05D007925 1.5e-77 293.1 184 77.7
MD03G1147800 Malus domestica HOM05D006357 ORTHO05D007925 2.5e-77 292.4 184 78.8
VMungo1127G1055 Vigna mungo HOM05D006357 ORTHO05D007925 2.5e-77 292.4 183 78.1
arahy.Tifrunner.gnm1.ann1.5186VC Arachis hypogaea HOM05D006357 ORTHO05D007925 4.3e-77 291.6 185 80.0
QL01p012091 Quercus lobata HOM05D006357 ORTHO05D007925 7.4e-77 290.8 180 79.4
arahy.Tifrunner.gnm1.ann1.JXBE2X Arachis hypogaea HOM05D006357 ORTHO05D007925 2.1e-76 289.3 185 79.5
Glyma.11G182400 Glycine max HOM05D006357 ORTHO05D007925 2.1e-76 289.3 181 77.9
PGR119G0351 Punica granatum HOM05D006357 ORTHO05D007925 6.2e-76 287.7 185 77.8
Duzib150G0376 Durio zibethinus HOM05D006357 ORTHO05D007925 8.2e-76 287.3 184 76.6
CANSAT54G2809 Cannabis sativa HOM05D006357 ORTHO05D007925 3.1e-75 285.4 181 76.2
Atru.chr3.3206 Acer truncatum HOM05D006357 ORTHO05D007925 1.5e-74 283.1 184 76.6
MELO3C014499.2 Cucumis melo HOM05D006357 ORTHO05D007925 4.5e-74 281.6 182 75.3
Lj3g0017887 Lotus japonicus HOM05D006357 ORTHO05D007925 5.8e-74 281.2 183 74.9
Lalb_Chr01g0004891 Lupinus albus HOM05D006357 ORTHO05D007925 5.8e-74 281.2 181 74.0
ClCG02G022220 Citrullus lanatus HOM05D006357 ORTHO05D007925 7.6e-74 280.8 184 73.9
Dinv22833 Davidia involucrata HOM05D006357 ORTHO05D007925 1.0e-73 280.4 184 72.8
Atru.chr3.3208 Acer truncatum HOM05D006357 ORTHO05D007925 1.7e-73 279.6 184 75.0
Ca_19414_v3 Cicer arietinum L. HOM05D006357 ORTHO05D007925 2.2e-73 279.3 181 74.6
Psat7g187640 Pisum sativum HOM05D006357 ORTHO05D007925 2.2e-73 279.3 185 74.6
Gohir.A08G005700 Gossypium hirsutum HOM05D006357 ORTHO05D007925 2.9e-73 278.9 184 72.8
Gohir.D08G016000 Gossypium hirsutum HOM05D006357 ORTHO05D007925 4.9e-73 278.1 183 72.7
Gorai.004G010300 Gossypium raimondii HOM05D006357 ORTHO05D007925 4.9e-73 278.1 183 72.7
Ciclev10029363m.g Citrus clementina HOM05D006357 ORTHO05D007925 6.5e-73 277.7 184 75.0
CsaV3_6G038350 Cucumis sativus L. HOM05D006357 ORTHO05D007925 6.5e-73 277.7 182 73.6
GSVIVG01036107001 Vitis vinifera HOM05D006357 ORTHO05D007925 2.5e-72 275.8 185 73.5
FvH4_3g25140 Fragaria vesca HOM05D006357 ORTHO05D007925 4.2e-72 275.0 179 75.4
Medtr4g052840 Medicago truncatula HOM05D006357 ORTHO05D007925 4.2e-72 275.0 179 74.9
CSS0003287 Camellia sinensis var. sinensis HOM05D006357 ORTHO05D007925 5.5e-72 274.6 184 73.4
BcaC01g02047 Brassica carinata HOM05D006357 ORTHO05D007925 7.1e-72 274.2 185 73.0
C03p69190 Brassica napus HOM05D006357 ORTHO05D007925 7.1e-72 274.2 185 73.0
BolC3t19173H Brassica oleracea HOM05D006357 ORTHO05D007925 7.1e-72 274.2 185 73.0
Lj2P966T16 Lonicera japonica HOM05D006357 ORTHO05D007925 1.2e-71 273.5 184 73.9
FAN21G3578 Fragaria x ananassa HOM05D006357 ORTHO05D007925 1.6e-71 273.1 179 74.9
A06p22010 Brassica napus HOM05D006357 ORTHO05D007925 2.1e-71 272.7 185 71.9
BraA06t25289Z Brassica rapa HOM05D006357 ORTHO05D007925 2.1e-71 272.7 185 71.9
Eucgr.J00502 Eucalyptus grandis HOM05D006357 ORTHO05D007925 4.6e-71 271.6 184 73.4
TPR.G17225 Trifolium pratense HOM05D006357 ORTHO05D007925 4.6e-71 271.6 179 73.7
Prupe.6G132600 Prunus persica HOM05D006357 ORTHO05D007925 6.0e-71 271.2 180 73.3
Ca_26666_v3 Cicer arietinum L. HOM05D006357 ORTHO05D007925 7.9e-71 270.8 179 73.2
Sp5g16810 Schrenkiella parvula HOM05D006357 ORTHO05D007925 7.9e-71 270.8 185 71.9
Gohir.D07G114400 Gossypium hirsutum HOM05D006357 ORTHO05D007925 1.3e-70 270.0 181 71.3
Manes.11G162800 Manihot esculenta HOM05D006357 ORTHO05D007925 1.8e-70 269.6 184 71.2
RcHm_v2.0_Chr5g0046241 Rosa chinensis HOM05D006357 ORTHO05D007925 1.8e-70 269.6 182 71.4
Cc01_g08980 Coffea canephora HOM05D006357 ORTHO05D007925 2.3e-70 269.2 184 72.3
Thhalv10010749m.g Eutrema salsugineum HOM05D006357 ORTHO05D007925 3.9e-70 268.5 185 72.4
BcaB01g01165 Brassica carinata HOM05D006357 ORTHO05D007925 6.7e-70 267.7 185 71.4
Gorai.001G122700 Gossypium raimondii HOM05D006357 ORTHO05D007925 8.7e-70 267.3 181 70.7
Hma1.2p1_0587F.1_g184180 Hydrangea macrophylla HOM05D006357 ORTHO05D007925 8.7e-70 267.3 182 70.3
Gohir.A07G110700 Gossypium hirsutum HOM05D006357 ORTHO05D007925 1.1e-69 266.9 180 71.1
THA.LOC104814785 Tarenaya hassleriana HOM05D006357 ORTHO05D007925 1.5e-69 266.5 183 71.6
Rhsim01G0204700 Rhododendron simsii HOM05D006357 ORTHO05D007925 2.5e-69 265.8 178 73.0
Sabra16G0125700 Salix brachista HOM05D006357 ORTHO05D007925 3.3e-69 265.4 185 70.3
TAR633G1946 Trochodendron aralioides HOM05D006357 ORTHO05D007925 4.3e-69 265.0 180 70.0
MD11G1166600 Malus domestica HOM05D006357 ORTHO05D007925 9.7e-69 263.8 180 71.1
SalBow3G2384 Salvia bowleyana HOM05D006357 ORTHO05D007925 1.3e-68 263.5 184 69.6
CARHR104480 Cardamine hirsuta HOM05D006357 ORTHO05D007925 1.6e-68 263.1 185 69.7
Potri.001G218400 Populus trichocarpa HOM05D006357 ORTHO05D007925 1.6e-68 263.1 185 68.6
Actinidia37077 Actinidia chinensis HOM05D006357 ORTHO05D007925 4.8e-68 261.5 182 71.4
TWI75G1708 Tripterygium wilfordii HOM05D006357 ORTHO05D007925 4.8e-68 261.5 182 70.3
TWI79G0514 Tripterygium wilfordii HOM05D006357 ORTHO05D007925 6.3e-68 261.2 183 68.9
Carub.0005s1011 Capsella rubella HOM05D006357 ORTHO05D007925 1.8e-67 259.6 185 68.6
EL10Ac7g15835 Beta vulgaris HOM05D006357 ORTHO05D007925 2.4e-67 259.2 187 67.4
Nitab4.5_0005641g0010 Nicotiana tabacum HOM05D006357 ORTHO05D007925 2.4e-67 259.2 180 71.1
Solyc11g068550.1 Solanum lycopersicum HOM05D006357 ORTHO05D007925 2.4e-67 259.2 178 70.8
Sopen11g027270 Solanum pennellii HOM05D006357 ORTHO05D007925 2.4e-67 259.2 178 70.8
Lsat_1_v5_gn_1_59200 Lactuca sativa HOM05D006357 ORTHO05D007925 3.1e-67 258.8 180 68.9
PSO801G0234 Papaver somniferum HOM05D006357 ORTHO05D007925 3.1e-67 258.8 185 67.0
MSTRG.12374 Avicennia marina HOM05D006357 ORTHO05D007925 4.1e-67 258.5 181 68.5
PSO339G3266 Papaver somniferum HOM05D006357 ORTHO05D007925 5.3e-67 258.1 185 67.6
AT3G44380 Arabidopsis thaliana HOM05D006357 ORTHO05D007925 6.9e-67 257.7 185 69.2
Nitab4.5_0006120g0030 Nicotiana tabacum HOM05D006357 ORTHO05D007925 9.0e-67 257.3 180 70.0
Aqoxy2G01095 Aquilegia oxysepala HOM05D006357 ORTHO05D007925 2.6e-66 255.8 183 67.8
Migut.N02483 Erythranthe guttata HOM05D006357 ORTHO05D007925 4.5e-66 255.0 180 68.9
Ah.08g215640 Amaranthus hybridus HOM05D006357 ORTHO05D007925 5.9e-66 254.6 187 67.9
AL5G22540 Arabidopsis lyrata HOM05D006357 ORTHO05D007925 5.9e-66 254.6 185 68.1
Aa31LG4G13870 Aethionema arabicum HOM05D004825 ORTHO05D005415 1.7e-65 253.1 179 69.3
unitig_699.g19178 Utricularia gibba HOM05D006357 ORTHO05D007925 1.7e-65 253.1 182 67.6
Sc06g0008780 Simmondsia chinensis HOM05D006357 ORTHO05D007925 2.9e-65 252.3 182 62.6
HanXRQChr01g0024501 Helianthus annuus HOM05D006357 ORTHO05D007925 5.0e-65 251.5 182 67.0
PGR102G0344 Punica granatum HOM05D006357 ORTHO05D007925 6.5e-65 251.1 180 68.3
FvH4_3g25160 Fragaria vesca HOM05D006357 ORTHO05D007925 3.2e-64 248.8 178 68.0
FAN25G2095 Fragaria x ananassa HOM05D006357 ORTHO05D007925 4.2e-64 248.4 178 68.0
MBI01_g14623_MAGBIO Magnolia biondii HOM05D006357 ORTHO05D007925 4.2e-64 248.4 182 64.3
Nn6g34850 Nelumbo nucifera HOM05D006357 ORTHO05D007925 9.4e-64 247.3 176 67.6
Dinv42541 Davidia involucrata HOM05D006357 ORTHO05D007925 3.6e-63 245.4 168 70.8
SGA_v2.0_scaffold177G39425 Striga asiatica HOM05D006357 ORTHO05D007925 4.6e-63 245.0 184 65.8
Sed0020794 Sechium edule HOM05D006357 ORTHO05D007925 1.4e-62 243.4 186 64.5
FAN11G2870 Fragaria x ananassa HOM05D006357 ORTHO05D007925 3.0e-62 242.3 171 69.0
Lalb_Chr03g0028161 Lupinus albus HOM05D006357 ORTHO05D007925 2.0e-61 239.6 182 62.6
Aqoxy4G02740 Aquilegia oxysepala HOM05D006357 ORTHO05D007925 1.3e-60 236.9 182 63.7
Sc21g0007020 Simmondsia chinensis HOM05D006357 ORTHO05D007925 8.2e-60 234.2 189 61.9
DCAR_006168 Daucus carota HOM05D006357 ORTHO05D007925 1.0e-57 227.3 178 62.4
Nn6g34849 Nelumbo nucifera HOM05D006357 ORTHO05D007925 7.9e-55 217.6 184 57.6
AUR62009745 Chenopodium quinoa HOM05D006357 ORTHO05D007925 5.7e-53 211.5 202 53.5
Ah.15g095880 Amaranthus hybridus HOM05D006357 ORTHO05D007925 2.8e-52 209.1 194 54.6
ECA248G3754 Erigeron canadensis HOM05D006357 ORTHO05D007925 8.2e-52 207.6 137 73.7
AUR62036192 Chenopodium quinoa HOM05D006357 ORTHO05D007925 1.1e-51 207.2 201 52.2
AUR62036201 Chenopodium quinoa HOM05D006357 ORTHO05D007925 4.7e-47 191.8 142 66.9
Os08g0558300 Oryza sativa ssp. japonica HOM05D006357 ORTHO05D007925 6.1e-47 191.4 176 55.7
PSO339G1489 Papaver somniferum HOM05D006357 ORTHO05D007925 1.0e-46 190.7 158 61.4
PSO384G0917 Papaver somniferum HOM05D006357 ORTHO05D007925 1.0e-46 190.7 158 62.0
RcHm_v2.0_Chr5g0046191 Rosa chinensis HOM05D006357 ORTHO05D007925 1.6e-42 176.8 116 75.9
PGSC0003DMG400026335 Solanum tuberosum HOM05D006357 ORTHO05D007925 3.0e-38 162.5 106 72.6
AagrBONN_evm.TU.Sc2ySwM_117.3687 Anthoceros agrestis HOM05D006357 ORTHO05D007925 4.4e-37 158.7 169 47.9
Cpa.g.sc195.8 Carica papaya HOM05D006357 ORTHO05D007925 1.7e-36 156.8 107 72.9
Mapoly0079s0020 Marchantia polymorpha HOM05D006357 ORTHO05D007925 2.2e-36 156.4 178 46.6
Pp3c21_10640 Physcomitrium patens HOM05D006357 ORTHO05D007925 3.8e-33 145.6 181 45.3
SEGI_40876 Sequoiadendron giganteum HOM05D006357 ORTHO05D007925 8.5e-33 144.4 179 42.5
SMO347G0335 Selaginella moellendorffii HOM05D006357 ORTHO05D007925 1.9e-32 143.3 169 44.4
Pp3c2_16750 Physcomitrium patens HOM05D006357 ORTHO05D007925 1.8e-30 136.7 188 41.5
ATR0820G064 Amborella trichopoda HOM05D006357 ORTHO05D007925 1.5e-29 133.7 175 40.6
Actinidia35469 Actinidia chinensis HOM05D006357 ORTHO05D007925 1.4e-27 127.1 86 69.8
Pp3c9_9450 Physcomitrium patens HOM05D006357 ORTHO05D007925 1.6e-26 123.6 159 39.6
AUR62036200 Chenopodium quinoa HOM05D006357 ORTHO05D007925 5.0e-25 118.6 95 58.9
ATR0820G202 Amborella trichopoda HOM05D006357 ORTHO05D007925 6.6e-25 118.2 132 47.7
AUR62044742 Chenopodium quinoa HOM05D006357 ORTHO05D007925 3.4e-21 105.9 75 70.7
ATR0820G128 Amborella trichopoda HOM05D006357 ORTHO05D007925 7.8e-18 94.7 84 59.5
CBR_g44534 Chara braunii HOM05D006357 ORTHO05D007925 1.1e-08 64.3 188 26.6
Glyma.12G090400 Glycine max HOM05D006357 ORTHO05D007925 1.1e-08 64.3 47 61.7
HPP92_019617 Vanilla planifolia HOM05D003111 ORTHO05D003502 1.9e-08 63.5 180 28.9
HPP92_019623 Vanilla planifolia HOM05D003111 ORTHO05D003502 1.2e-07 60.8 162 29.6
SHI02767 Sapria himalayana HOM05D003111 ORTHO05D003502 1.4e-06 57.4 154 27.9


User provided reference genes

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