Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009996 Carpinus fangiana HOM05D005110 ORTHO05D006074 2.3e-96 355.5 179 100.0
CiPaw.14G098700 Carya illinoinensis HOM05D005110 ORTHO05D006074 4.5e-63 245.0 180 72.2
QL01p011992 Quercus lobata HOM05D005110 ORTHO05D006074 1.3e-62 243.4 181 71.8
QL01p011978 Quercus lobata HOM05D005110 ORTHO05D006074 1.8e-56 223.0 182 67.6
Prupe.6G134300 Prunus persica HOM05D005110 ORTHO05D006074 1.1e-53 213.8 175 66.9
Duzib170G1118 Durio zibethinus HOM05D005110 ORTHO05D006074 1.4e-53 213.4 182 64.3
Atru.chr3.3190 Acer truncatum HOM05D005110 ORTHO05D006074 2.5e-53 212.6 184 62.5
CiPaw.13G134200 Carya illinoinensis HOM05D005110 ORTHO05D006074 1.6e-52 209.9 177 67.2
MD03G1148100 Malus domestica HOM05D005110 ORTHO05D006074 4.6e-52 208.4 182 63.7
Duzib150G1383 Durio zibethinus HOM05D005110 ORTHO05D006074 6.1e-52 208.0 181 64.1
GSVIVG01036094001 Vitis vinifera HOM05D005110 ORTHO05D006074 3.0e-51 205.7 180 63.3
Duzib168G1438 Durio zibethinus HOM05D005110 ORTHO05D006074 3.9e-51 205.3 183 63.4
Dinv22825 Davidia involucrata HOM05D005110 ORTHO05D006074 6.7e-51 204.5 181 63.0
Ciclev10029378m.g Citrus clementina HOM05D005110 ORTHO05D006074 1.5e-50 203.4 184 63.0
Potri.009G019300 Populus trichocarpa HOM05D005110 ORTHO05D006074 4.3e-50 201.8 180 62.8
Hma1.2p1_0587F.1_g184070 Hydrangea macrophylla HOM05D005110 ORTHO05D006074 1.3e-49 200.3 178 63.5
MD11G1167600 Malus domestica HOM05D005110 ORTHO05D006074 2.8e-49 199.1 182 60.4
vmacro14345 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 2.8e-49 199.1 183 57.9
Thecc.09G280200 Theobroma cacao HOM05D005110 ORTHO05D006074 3.7e-49 198.7 181 61.3
Rhsim01G0204600 Rhododendron simsii HOM05D005110 ORTHO05D006074 4.8e-49 198.4 181 60.2
COL.COLO4_34021 Corchorus olitorius HOM05D005110 ORTHO05D006074 8.2e-49 197.6 181 61.9
Medtr2g086680 Medicago truncatula HOM05D005110 ORTHO05D006074 1.1e-48 197.2 179 57.5
Glyma.13G315400 Glycine max HOM05D005110 ORTHO05D006074 1.4e-48 196.8 180 59.4
TWI79G0870 Tripterygium wilfordii HOM05D005110 ORTHO05D006074 3.1e-48 195.7 173 60.1
FvH4_3g25370 Fragaria vesca HOM05D005110 ORTHO05D006074 4.1e-48 195.3 177 62.1
FAN21G3897 Fragaria x ananassa HOM05D005110 ORTHO05D006074 4.1e-48 195.3 177 62.1
Lj3g0002892 Lotus japonicus HOM05D005110 ORTHO05D006074 4.1e-48 195.3 180 62.2
arahy.Tifrunner.gnm1.ann1.EYNG7S Arachis hypogaea HOM05D005110 ORTHO05D006074 5.3e-48 194.9 180 62.2
VMungo1080G1295 Vigna mungo HOM05D005110 ORTHO05D006074 5.3e-48 194.9 179 58.1
Glyma.12G091100 Glycine max HOM05D005110 ORTHO05D006074 6.9e-48 194.5 180 60.6
Lalb_Chr01g0004911 Lupinus albus HOM05D005110 ORTHO05D006074 6.9e-48 194.5 179 59.8
FAN11G1413 Fragaria x ananassa HOM05D005110 ORTHO05D006074 9.0e-48 194.1 177 62.1
FAN25G3715 Fragaria x ananassa HOM05D005110 ORTHO05D006074 1.2e-47 193.7 177 62.1
Dinv42535 Davidia involucrata HOM05D005110 ORTHO05D006074 1.5e-47 193.4 181 58.0
Actinidia37076 Actinidia chinensis HOM05D005110 ORTHO05D006074 2.0e-47 193.0 176 59.1
CANSAT54G0919 Cannabis sativa HOM05D005110 ORTHO05D006074 2.0e-47 193.0 181 60.2
TWI31G0848 Tripterygium wilfordii HOM05D005110 ORTHO05D006074 2.0e-47 193.0 174 59.8
Gohir.D05G082600 Gossypium hirsutum HOM05D005110 ORTHO05D006074 3.4e-47 192.2 182 59.3
Gorai.009G084200 Gossypium raimondii HOM05D005110 ORTHO05D006074 3.4e-47 192.2 182 59.3
QL01p011973 Quercus lobata HOM05D005110 ORTHO05D006074 3.4e-47 192.2 181 61.3
TPR.G17227 Trifolium pratense HOM05D005110 ORTHO05D006074 5.9e-47 191.4 179 58.7
Gohir.A05G079700 Gossypium hirsutum HOM05D005110 ORTHO05D006074 1.3e-46 190.3 182 59.3
Phvul.005G122600 Phaseolus vulgaris HOM05D005110 ORTHO05D006074 2.2e-46 189.5 180 56.1
Glyma.11G182100 Glycine max HOM05D005110 ORTHO05D006074 2.9e-46 189.1 181 59.7
arahy.Tifrunner.gnm1.ann1.XFIF97 Arachis hypogaea HOM05D005110 ORTHO05D006074 5.0e-46 188.3 180 60.6
Sabra09G0012800 Salix brachista HOM05D005110 ORTHO05D006074 1.1e-45 187.2 181 58.6
Rhsim13G0112900 Rhododendron simsii HOM05D005110 ORTHO05D006074 1.4e-45 186.8 182 59.3
Lj3g0016581 Lotus japonicus HOM05D005110 ORTHO05D006074 1.9e-45 186.4 182 58.2
Lalb_Chr03g0028181 Lupinus albus HOM05D005110 ORTHO05D006074 1.9e-45 186.4 179 56.4
Phvul.011G095400 Phaseolus vulgaris HOM05D005110 ORTHO05D006074 1.9e-45 186.4 179 59.2
DCAR_010338 Daucus carota HOM05D005110 ORTHO05D006074 5.5e-45 184.9 180 56.1
Psat7g142160 Pisum sativum HOM05D005110 ORTHO05D006074 5.5e-45 184.9 179 56.4
CSS0022586 Camellia sinensis var. sinensis HOM05D005110 ORTHO05D006074 7.2e-45 184.5 181 56.9
Oeu035569.1 Olea europaea HOM05D005110 ORTHO05D006074 2.1e-44 183.0 178 55.6
VMungo1127G0906 Vigna mungo HOM05D005110 ORTHO05D006074 4.6e-44 181.8 175 59.4
Lalb_Chr19g0136401 Lupinus albus HOM05D005110 ORTHO05D006074 1.0e-43 180.6 180 55.6
Manes.11G163300 Manihot esculenta HOM05D005110 ORTHO05D006074 6.7e-43 177.9 182 54.9
Psat5g259000 Pisum sativum HOM05D005110 ORTHO05D006074 1.1e-42 177.2 179 52.0
vmacro03324 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 2.5e-42 176.0 188 57.4
Cc01_g08910 Coffea canephora HOM05D005110 ORTHO05D006074 3.3e-42 175.6 181 54.7
PGR102G3267 Punica granatum HOM05D005110 ORTHO05D006074 4.3e-42 175.3 180 55.6
Nn2g14215 Nelumbo nucifera HOM05D005110 ORTHO05D006074 7.4e-42 174.5 177 53.1
Eucgr.B03836 Eucalyptus grandis HOM05D005110 ORTHO05D006074 9.7e-42 174.1 191 53.4
Sopen06g030680 Solanum pennellii HOM05D005110 ORTHO05D006074 9.7e-42 174.1 179 52.0
Oeu002365.1 Olea europaea HOM05D005110 ORTHO05D006074 1.3e-41 173.7 182 56.0
Haze_23356 Corylus avellana HOM05D005110 ORTHO05D006074 1.7e-41 173.3 101 89.1
Solyc06g074260.4 Solanum lycopersicum HOM05D005110 ORTHO05D006074 2.2e-41 172.9 179 52.0
MSTRG.18766 Avicennia marina HOM05D005110 ORTHO05D006074 1.1e-40 170.6 182 50.0
Cpa.g.sc195.13 Carica papaya HOM05D005110 ORTHO05D006074 3.1e-40 169.1 168 58.3
SalBow6G3038 Salvia bowleyana HOM05D005110 ORTHO05D006074 5.3e-40 168.3 177 53.1
SGA_v2.0_scaffold22G09852 Striga asiatica HOM05D005110 ORTHO05D006074 5.3e-40 168.3 181 51.9
Aqoxy4G02728 Aquilegia oxysepala HOM05D005110 ORTHO05D006074 6.9e-40 167.9 186 53.8
CAN.G919.35 Capsicum annuum HOM05D005110 ORTHO05D006074 1.2e-39 167.2 180 51.7
MSTRG.21034 Avicennia marina HOM05D005110 ORTHO05D006074 1.5e-39 166.8 181 51.4
HanXRQChr01g0024471 Helianthus annuus HOM05D005110 ORTHO05D006074 3.4e-39 165.6 179 53.1
PGSC0003DMG400005884 Solanum tuberosum HOM05D005110 ORTHO05D006074 5.9e-39 164.9 179 50.3
Oeu027156.1 Olea europaea HOM05D005110 ORTHO05D006074 7.7e-39 164.5 182 53.3
Nitab4.5_0005472g0010 Nicotiana tabacum HOM05D005110 ORTHO05D006074 1.3e-38 163.7 173 52.6
Hund18768 Selenicereus undatus HOM05D005110 ORTHO05D006074 1.3e-38 163.7 175 54.9
Nitab4.5_0000937g0070 Nicotiana tabacum HOM05D005110 ORTHO05D006074 5.0e-38 161.8 172 53.5
Peaxi162Scf00091g00622 Petunia axillaris HOM05D005110 ORTHO05D006074 1.4e-37 160.2 174 52.9
HanXRQChr13g0426031 Helianthus annuus HOM05D005110 ORTHO05D006074 1.9e-37 159.8 186 50.5
Actinidia25117 Actinidia chinensis HOM05D005110 ORTHO05D006074 2.5e-37 159.5 177 49.7
ECA248G3565 Erigeron canadensis HOM05D005110 ORTHO05D006074 2.5e-37 159.5 178 51.1
Migut.D02434 Erythranthe guttata HOM05D005110 ORTHO05D006074 1.2e-36 157.1 181 49.2
Lsat_1_v5_gn_1_59041 Lactuca sativa HOM05D005110 ORTHO05D006074 1.2e-36 157.1 181 50.3
Sed0010097 Sechium edule HOM05D005110 ORTHO05D006074 2.1e-36 156.4 188 48.9
MBI17_g32417_MAGBIO Magnolia biondii HOM05D005110 ORTHO05D006074 1.8e-35 153.3 184 51.6
Sc06g0008710 Simmondsia chinensis HOM05D005110 ORTHO05D006074 2.3e-35 152.9 181 48.6
arahy.Tifrunner.gnm1.ann1.GADS7N Arachis hypogaea HOM05D005110 ORTHO05D006074 3.0e-35 152.5 183 47.5
CSS0002660 Camellia sinensis var. sinensis HOM05D005110 ORTHO05D006074 3.0e-35 152.5 177 52.0
ClCG01G012070 Citrullus lanatus HOM05D005110 ORTHO05D006074 8.8e-35 151.0 187 48.1
arahy.Tifrunner.gnm1.ann1.NUG06Z Arachis hypogaea HOM05D005110 ORTHO05D006074 7.4e-34 147.9 185 47.6
ClCG02G022270 Citrullus lanatus HOM05D005110 ORTHO05D006074 7.4e-34 147.9 193 48.2
TAR623G0362 Trochodendron aralioides HOM05D005110 ORTHO05D006074 8.2e-33 144.4 132 59.1
DCAR_012208 Daucus carota HOM05D005110 ORTHO05D006074 1.1e-32 144.1 182 50.0
Sp6g22820 Schrenkiella parvula HOM05D005110 ORTHO05D006074 5.0e-30 135.2 172 47.1
CsaV3_6G038400 Cucumis sativus L. HOM05D005110 ORTHO05D006074 6.5e-30 134.8 199 44.2
Thhalv10014830m.g Eutrema salsugineum HOM05D005110 ORTHO05D006074 8.5e-30 134.4 183 47.0
AL6G33450 Arabidopsis lyrata HOM05D005110 ORTHO05D006074 1.1e-29 134.0 172 47.1
TAR369G1010 Trochodendron aralioides HOM05D005110 ORTHO05D006074 1.1e-29 134.0 129 57.4
MELO3C014504.2 Cucumis melo HOM05D005110 ORTHO05D006074 2.5e-29 132.9 201 42.8
BcaB08g36432 Brassica carinata HOM05D000477 ORTHO05D006074 3.2e-29 132.5 172 47.1
AT5G22430 Arabidopsis thaliana HOM05D005110 ORTHO05D006074 4.2e-29 132.1 170 45.9
BraA02t05659Z Brassica rapa HOM05D005110 ORTHO05D006074 9.4e-29 131.0 172 47.1
THA.LOC104800521 Tarenaya hassleriana HOM05D005110 ORTHO05D006074 9.4e-29 131.0 162 46.9
C02p10870 Brassica napus HOM05D005110 ORTHO05D006074 3.6e-28 129.0 182 46.7
CsaV3_1G014930 Cucumis sativus L. HOM05D005110 ORTHO05D006074 3.6e-28 129.0 173 45.1
CsaV3_1G015850 Cucumis sativus L. HOM05D005110 ORTHO05D006074 3.6e-28 129.0 173 45.1
Aa31LG1G13130 Aethionema arabicum HOM05D005110 ORTHO05D006074 4.7e-28 128.6 175 46.9
BcaB05g22726 Brassica carinata HOM05D005110 ORTHO05D006074 6.1e-28 128.3 170 45.9
Carub.0006s2017 Capsella rubella HOM05D005110 ORTHO05D006074 6.1e-28 128.3 170 46.5
CARHR191100 Cardamine hirsuta HOM05D005110 ORTHO05D006074 6.1e-28 128.3 170 48.8
BolC2t07157H Brassica oleracea HOM05D005110 ORTHO05D006074 8.0e-28 127.9 172 47.1
MELO3C004693.2 Cucumis melo HOM05D005110 ORTHO05D006074 8.0e-28 127.9 188 44.7
MSTRG.17701 Avicennia marina HOM05D005110 ORTHO05D006074 2.3e-27 126.3 172 45.3
BNapus_Darmor_BZH_scaffold_38p00660 Brassica napus HOM05D005110 ORTHO05D006074 5.2e-27 125.2 172 44.8
Lj2P968T16 Lonicera japonica HOM05D005110 ORTHO05D006074 6.7e-27 124.8 126 52.4
Thhalv10002110m.g Eutrema salsugineum HOM05D005110 ORTHO05D006074 8.8e-27 124.4 157 44.6
CARHR119990 Cardamine hirsuta HOM05D005110 ORTHO05D006074 3.3e-26 122.5 173 41.6
BraA07t29533Z Brassica rapa HOM05D005110 ORTHO05D006074 4.4e-26 122.1 154 45.5
A07p18150 Brassica napus HOM05D005110 ORTHO05D006074 7.4e-26 121.3 154 45.5
BcaB02g10088 Brassica carinata HOM05D005110 ORTHO05D006074 2.2e-25 119.8 154 44.8
Hund20930 Selenicereus undatus HOM05D005110 ORTHO05D006074 2.8e-25 119.4 138 48.6
Carub.0004s0802 Capsella rubella HOM05D005110 ORTHO05D006074 3.7e-25 119.0 182 42.3
Sp4g10180 Schrenkiella parvula HOM05D005110 ORTHO05D006074 3.7e-25 119.0 159 43.4
C04p24220 Brassica napus HOM05D005110 ORTHO05D006074 1.1e-24 117.5 154 44.2
BolC4t23920H Brassica oleracea HOM05D005110 ORTHO05D006074 1.1e-24 117.5 154 44.2
AT2G27385 Arabidopsis thaliana HOM05D005110 ORTHO05D006074 2.4e-24 116.3 157 43.3
AL4G21340 Arabidopsis lyrata HOM05D005110 ORTHO05D006074 3.1e-24 115.9 157 43.3
THA.LOC104810920 Tarenaya hassleriana HOM05D005110 ORTHO05D006074 4.1e-24 115.5 180 43.3
BcaC03g13883 Brassica carinata HOM05D005110 ORTHO05D006074 2.0e-23 113.2 157 46.5
BcaC02g10869 Brassica carinata HOM05D005110 ORTHO05D006074 3.5e-23 112.5 154 42.9
Manes.04G002101 Manihot esculenta HOM05D005110 ORTHO05D006074 3.5e-23 112.5 108 50.0
ATR0580G107 Amborella trichopoda HOM05D005110 ORTHO05D006074 4.5e-23 112.1 188 41.0
vmacro14354 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 1.8e-19 100.1 107 52.3
unitig_746.g26607 Utricularia gibba HOM05D005110 ORTHO05D006074 8.8e-19 97.8 168 36.9
HPP92_011908 Vanilla planifolia HOM05D005110 ORTHO05D006074 7.5e-18 94.7 118 46.6
HPP92_005471 Vanilla planifolia HOM05D005110 ORTHO05D006074 6.3e-17 91.7 194 34.5
Actinidia35470 Actinidia chinensis HOM05D005110 ORTHO05D006074 5.9e-15 85.1 91 52.7
BolC9t58287H Brassica oleracea HOM05D005110 ORTHO05D006074 1.2e-12 77.4 174 36.8
C09p54160 Brassica napus HOM05D005110 ORTHO05D006074 4.7e-12 75.5 172 35.5
TPR.G4458 Trifolium pratense HOM05D005110 ORTHO05D006074 1.4e-11 73.9 68 57.4
A10p18400 Brassica napus HOM05D005110 ORTHO05D006074 1.7e-06 57.0 47 57.4


User provided reference genes

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