Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009988 Carpinus fangiana HOM05D004765 ORTHO05D005900 0.0e+00 1110.1 564 100.0
Haze_23347 Corylus avellana HOM05D004765 ORTHO05D005900 1.0e-307 1059.3 632 87.7
CiPaw.14G098100 Carya illinoinensis HOM05D004765 ORTHO05D005900 1.1e-293 1012.7 565 90.1
QL01p011857 Quercus lobata HOM05D004765 ORTHO05D005900 3.6e-292 1007.7 564 90.2
Prupe.6G135800 Prunus persica HOM05D004765 ORTHO05D005900 6.1e-284 980.3 562 87.7
Potri.009G160400 Populus trichocarpa HOM05D004765 ORTHO05D005900 1.4e-280 969.1 566 85.2
RcHm_v2.0_Chr5g0045881 Rosa chinensis HOM05D004765 ORTHO05D005900 4.1e-280 967.6 565 86.2
Manes.11G164300 Manihot esculenta HOM05D004765 ORTHO05D005900 1.0e-278 963.0 565 83.9
MD03G1149800 Malus domestica HOM05D004765 ORTHO05D005900 2.5e-277 958.4 554 86.8
Ciclev10028115m.g Citrus clementina HOM05D004765 ORTHO05D005900 4.3e-277 957.6 564 84.4
GSVIVG01036081001 Vitis vinifera HOM05D004765 ORTHO05D005900 4.3e-277 957.6 565 85.5
Thecc.09G278900 Theobroma cacao HOM05D004765 ORTHO05D005900 1.0e-275 953.0 561 84.7
MD11G1168600 Malus domestica HOM05D004765 ORTHO05D005900 4.0e-275 951.0 559 85.7
Dinv22819 Davidia involucrata HOM05D004765 ORTHO05D005900 3.4e-274 948.0 563 84.5
Sabra09G0125600 Salix brachista HOM05D004765 ORTHO05D005900 5.7e-274 947.2 569 83.1
Potri.004G198200 Populus trichocarpa HOM05D004765 ORTHO05D005900 8.3e-273 943.3 566 83.4
FAN16G1441 Fragaria x ananassa HOM05D004765 ORTHO05D005900 1.8e-272 942.2 561 84.5
FAN11G2377 Fragaria x ananassa HOM05D004765 ORTHO05D005900 3.2e-272 941.4 559 84.6
Sabra04G0134200 Salix brachista HOM05D004765 ORTHO05D005900 5.4e-272 940.6 563 83.1
Cpa.g.sc195.23 Carica papaya HOM05D004765 ORTHO05D005900 7.0e-272 940.3 565 82.8
PGR119G0504 Punica granatum HOM05D004765 ORTHO05D005900 3.5e-271 937.9 565 83.4
Gorai.009G084100 Gossypium raimondii HOM05D004765 ORTHO05D005900 2.3e-270 935.3 564 82.8
Dinv08934 Davidia involucrata HOM05D004765 ORTHO05D005900 3.0e-270 934.9 562 83.5
Gohir.D05G082500 Gossypium hirsutum HOM05D004765 ORTHO05D005900 5.0e-270 934.1 564 82.6
COL.COLO4_34006 Corchorus olitorius HOM05D004765 ORTHO05D005900 6.6e-270 933.7 561 83.2
Glyma.12G091700 Glycine max HOM05D004765 ORTHO05D005900 8.6e-270 933.3 565 82.5
Actinidia07259 Actinidia chinensis HOM05D004765 ORTHO05D005900 1.1e-269 932.9 562 83.1
Gohir.A05G079600 Gossypium hirsutum HOM05D004765 ORTHO05D005900 1.9e-269 932.2 564 82.6
FAN21G2648 Fragaria x ananassa HOM05D004765 ORTHO05D005900 2.5e-269 931.8 576 82.1
CANSAT54G2137 Cannabis sativa HOM05D004765 ORTHO05D005900 5.6e-269 930.6 565 82.5
Actinidia24229 Actinidia chinensis HOM05D004765 ORTHO05D005900 1.2e-268 929.5 562 82.2
Glyma.11G181400 Glycine max HOM05D004765 ORTHO05D005900 1.6e-268 929.1 565 82.1
CSS0013873 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 1.0e-267 926.4 556 83.5
CSS0028820 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 1.8e-267 925.6 556 83.5
FAN25G0471 Fragaria x ananassa HOM05D004765 ORTHO05D005900 5.2e-267 924.1 584 80.8
Phvul.011G096100 Phaseolus vulgaris HOM05D004765 ORTHO05D005900 6.8e-267 923.7 564 81.6
TWI31G1403 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 6.8e-267 923.7 556 83.1
Gohir.D09G096800 Gossypium hirsutum HOM05D004765 ORTHO05D005900 8.9e-267 923.3 561 82.0
Ca_19442_v3 Cicer arietinum L. HOM05D004765 ORTHO05D005900 2.6e-266 921.8 565 81.8
Gorai.006G113500 Gossypium raimondii HOM05D004765 ORTHO05D005900 2.6e-266 921.8 561 81.8
Gohir.A09G097000 Gossypium hirsutum HOM05D004765 ORTHO05D005900 7.5e-266 920.2 561 81.6
arahy.Tifrunner.gnm1.ann1.HXUJ4C Arachis hypogaea HOM05D004765 ORTHO05D005900 9.8e-266 919.8 565 81.1
arahy.Tifrunner.gnm1.ann1.E8Y1JT Arachis hypogaea HOM05D004765 ORTHO05D005900 2.2e-265 918.7 565 81.1
Lalb_Chr03g0028231 Lupinus albus HOM05D004765 ORTHO05D005900 5.4e-264 914.1 566 81.1
Lj3g0002417 Lotus japonicus HOM05D004765 ORTHO05D005900 9.2e-264 913.3 565 81.1
TPR.G17196 Trifolium pratense HOM05D004765 ORTHO05D005900 1.6e-263 912.5 565 80.9
TWI79G1303 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 2.0e-263 912.1 556 81.3
CSS0015967 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 1.7e-262 909.1 559 81.8
CSS0022046 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 6.6e-262 907.1 559 81.6
Atru.chr3.3169 Acer truncatum HOM05D004765 ORTHO05D005900 4.3e-261 904.4 546 83.9
Sed0019641 Sechium edule HOM05D004765 ORTHO05D005900 5.6e-261 904.0 565 80.4
Medtr4g052530 Medicago truncatula HOM05D004765 ORTHO05D005900 9.5e-261 903.3 582 78.7
vmacro14340 Vaccinium macrocarpon HOM05D004765 ORTHO05D005900 3.6e-260 901.4 551 82.0
Lalb_Chr01g0004931 Lupinus albus HOM05D004765 ORTHO05D005900 8.1e-260 900.2 565 79.6
Eucgr.J00522 Eucalyptus grandis HOM05D004765 ORTHO05D005900 4.0e-259 897.9 543 82.7
DCAR_006171 Daucus carota HOM05D004765 ORTHO05D005900 8.3e-257 890.2 559 80.0
ClCG01G011820 Citrullus lanatus HOM05D004765 ORTHO05D005900 1.4e-256 889.4 566 79.5
Sc12g0004610 Simmondsia chinensis HOM05D004765 ORTHO05D005900 9.2e-256 886.7 565 78.1
Rhsim01G0203800 Rhododendron simsii HOM05D004765 ORTHO05D005900 1.0e-254 883.2 604 75.5
MELO3C025589.2 Cucumis melo HOM05D004765 ORTHO05D005900 5.6e-253 877.5 564 78.4
Duzib170G0619 Durio zibethinus HOM05D004765 ORTHO05D005900 5.6e-253 877.5 561 77.5
THA.LOC104814781 Tarenaya hassleriana HOM05D004765 ORTHO05D005900 2.1e-252 875.5 554 79.2
CsaV3_1G015080 Cucumis sativus L. HOM05D004765 ORTHO05D005900 3.6e-252 874.8 564 78.0
CARHR104550 Cardamine hirsuta HOM05D004765 ORTHO05D005900 4.7e-252 874.4 554 78.5
Carub.0005s1005 Capsella rubella HOM05D004765 ORTHO05D005900 1.8e-251 872.5 554 78.5
Hund20934 Selenicereus undatus HOM05D004765 ORTHO05D005900 1.8e-251 872.5 552 78.8
Thhalv10010249m.g Eutrema salsugineum HOM05D004765 ORTHO05D005900 2.6e-250 868.6 560 77.7
Nn6g34806 Nelumbo nucifera HOM05D004765 ORTHO05D005900 5.8e-250 867.5 565 78.6
AT3G44330 Arabidopsis thaliana HOM05D004765 ORTHO05D005900 9.9e-250 866.7 551 78.2
Sp5g16890 Schrenkiella parvula HOM05D004765 ORTHO05D005900 1.9e-248 862.4 554 78.0
PSO801G0028 Papaver somniferum HOM05D004765 ORTHO05D005900 2.4e-248 862.1 561 77.5
AL5G22480 Arabidopsis lyrata HOM05D004765 ORTHO05D005900 4.1e-248 861.3 551 77.7
PSO339G1244 Papaver somniferum HOM05D004765 ORTHO05D005900 4.1e-248 861.3 561 77.4
BcaB01g01169 Brassica carinata HOM05D004765 ORTHO05D005900 5.4e-248 860.9 554 77.1
Lsat_1_v5_gn_1_77581 Lactuca sativa HOM05D004765 ORTHO05D005900 2.7e-247 858.6 559 76.9
ATR0081G060 Amborella trichopoda HOM05D004765 ORTHO05D005900 1.7e-246 855.9 564 74.8
MSTRG.18770 Avicennia marina HOM05D004765 ORTHO05D005900 2.3e-246 855.5 552 78.4
BraA06t25294Z Brassica rapa HOM05D004765 ORTHO05D005900 3.9e-246 854.7 557 76.5
Cc01_g08830 Coffea canephora HOM05D004765 ORTHO05D005900 5.1e-246 854.4 579 75.0
ECA248G3663 Erigeron canadensis HOM05D004765 ORTHO05D005900 6.6e-246 854.0 558 76.9
HanXRQChr01g0024031 Helianthus annuus HOM05D004765 ORTHO05D005900 1.5e-245 852.8 558 76.3
Peaxi162Scf00345g01023 Petunia axillaris HOM05D004765 ORTHO05D005900 9.6e-245 850.1 555 78.0
Nitab4.5_0003068g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 1.6e-244 849.4 552 78.8
A06p22050 Brassica napus HOM05D004765 ORTHO05D005900 3.6e-244 848.2 554 76.2
C03p69330 Brassica napus HOM05D004765 ORTHO05D005900 4.7e-244 847.8 555 76.4
BolC3t19191H Brassica oleracea HOM05D004765 ORTHO05D005900 4.7e-244 847.8 555 76.4
Sopen11g027390 Solanum pennellii HOM05D004765 ORTHO05D005900 8.1e-244 847.0 551 78.2
BcaC01g02231 Brassica carinata HOM05D004765 ORTHO05D005900 1.4e-243 846.3 561 75.4
Nitab4.5_0000227g0370 Nicotiana tabacum HOM05D004765 ORTHO05D005900 2.4e-243 845.5 552 78.4
BcaC01g02031 Brassica carinata HOM05D004765 ORTHO05D005900 3.1e-243 845.1 555 76.0
Solyc11g068670.2 Solanum lycopersicum HOM05D004765 ORTHO05D005900 6.9e-243 844.0 551 78.0
A06p26850 Brassica napus HOM05D004765 ORTHO05D005900 9.0e-243 843.6 561 75.0
Peaxi162Scf00224g00217 Petunia axillaris HOM05D004765 ORTHO05D005900 3.4e-242 841.6 554 77.6
HanXRQChr11g0343661 Helianthus annuus HOM05D004765 ORTHO05D005900 5.8e-242 840.9 558 75.3
Aqoxy2G01052 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 1.1e-240 836.6 564 74.5
Psat7g187280 Pisum sativum HOM05D004765 ORTHO05D005900 1.9e-240 835.9 520 79.6
Migut.N02474 Erythranthe guttata HOM05D004765 ORTHO05D005900 4.2e-240 834.7 561 77.0
Aqoxy4G02718 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 1.3e-238 829.7 603 70.6
BcaB02g10755 Brassica carinata HOM05D004765 ORTHO05D005900 1.7e-238 829.3 563 74.4
Aa31LG4G13830 Aethionema arabicum HOM05D004765 ORTHO05D005900 3.0e-238 828.6 533 77.5
CAN.G745.10 Capsicum annuum HOM05D004765 ORTHO05D005900 3.0e-238 828.6 549 76.3
Nitab4.5_0008177g0070 Nicotiana tabacum HOM05D004765 ORTHO05D005900 3.0e-238 828.6 604 72.8
Solyc01g009380.3 Solanum lycopersicum HOM05D004765 ORTHO05D005900 1.1e-237 826.6 551 76.8
CDE08G1681 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 1.3e-236 823.2 544 75.7
AUR62020257 Chenopodium quinoa HOM05D004765 ORTHO05D005900 8.1e-236 820.5 532 77.8
Nitab4.5_0000731g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 1.4e-235 819.7 539 77.7
Duzib168G0312 Durio zibethinus HOM05D004765 ORTHO05D005900 5.3e-235 817.8 562 75.1
SalBow6G2851 Salvia bowleyana HOM05D004765 ORTHO05D005900 9.9e-234 813.5 598 70.9
Oeu051604.1 Olea europaea HOM05D004765 ORTHO05D005900 3.2e-232 808.5 554 75.3
SGA_v2.0_scaffold177G39433 Striga asiatica HOM05D004765 ORTHO05D005900 2.5e-229 798.9 566 72.1
EL10Ac7g16329 Beta vulgaris HOM05D004765 ORTHO05D005900 4.3e-229 798.1 632 66.3
FvH4_3g25670 Fragaria vesca HOM05D004765 ORTHO05D005900 4.3e-229 798.1 476 83.2
HPP92_006357 Vanilla planifolia HOM05D004765 ORTHO05D005900 3.7e-228 795.0 562 71.5
Os08g0102100 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D005900 1.8e-227 792.7 554 70.0
SGA_v2.0_scaffold295G47508 Striga asiatica HOM05D004765 ORTHO05D005900 3.0e-222 775.4 557 69.5
Zm00001eb259900 Zea mays HOM05D004765 ORTHO05D005900 2.1e-220 769.2 556 68.0
Lj1A257T30 Lonicera japonica HOM05D004765 ORTHO05D005900 6.7e-214 747.7 454 82.8
unitig_0.g1473 Utricularia gibba HOM05D004765 ORTHO05D005900 2.5e-213 745.7 575 66.3
CDE02G4012 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 1.4e-208 729.9 565 68.1
Migut.D02363 Erythranthe guttata HOM05D004765 ORTHO05D005900 1.9e-205 719.5 476 76.1
Sc12g0004660 Simmondsia chinensis HOM05D004765 ORTHO05D005900 1.9e-205 719.5 477 75.5
Zm00001eb198750 Zea mays HOM05D004765 ORTHO05D005900 1.3e-201 706.8 504 67.5
Mapoly0185s0020 Marchantia polymorpha HOM05D004765 ORTHO05D005900 3.8e-201 705.3 561 62.2
Pp3c12_11630 Physcomitrium patens HOM05D004765 ORTHO05D005900 1.8e-187 659.8 549 60.5
SMO141G0161 Selaginella moellendorffii HOM05D004765 ORTHO05D005900 8.0e-183 644.4 556 59.4
AUR62001526 Chenopodium quinoa HOM05D004765 ORTHO05D005900 1.8e-179 633.3 412 76.7
TAR633G2468 Trochodendron aralioides HOM05D004765 ORTHO05D005900 3.1e-171 605.9 367 81.7
C03p67600 Brassica napus HOM05D004765 ORTHO05D005900 7.2e-168 594.7 403 72.2
BraA06t25618Z Brassica rapa HOM05D004765 ORTHO05D005900 7.2e-168 594.7 403 72.0
BolSC21t60262H Brassica oleracea HOM05D004765 ORTHO05D005900 8.0e-167 591.3 403 72.0
Oeu014468.1 Olea europaea HOM05D004765 ORTHO05D005900 1.1e-163 580.9 359 83.0
CBR_g17963 Chara braunii HOM05D004765 ORTHO05D005900 5.2e-150 535.4 562 50.5
AagrBONN_evm.TU.Sc2ySwM_368.2350 Anthoceros agrestis HOM05D004765 ORTHO05D005900 2.8e-135 486.5 532 46.8
VMungo1127G1239 Vigna mungo HOM05D004765 ORTHO05D005900 4.4e-133 479.2 272 86.8
Sopen01g004890 Solanum pennellii HOM05D004765 ORTHO05D005900 6.0e-130 468.8 317 74.4
CAN.G226.4 Capsicum annuum HOM05D004765 ORTHO05D005900 2.6e-117 426.8 334 67.4
SEGI_38882 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 5.3e-102 375.9 220 81.4
CAN.G30.1 Capsicum annuum HOM05D004765 ORTHO05D005900 1.0e-84 318.5 195 76.4
Migut.D02428 Erythranthe guttata HOM05D004765 ORTHO05D005900 1.8e-81 307.8 200 81.0
Psat4g157520 Pisum sativum HOM05D004765 ORTHO05D005900 3.5e-69 266.9 195 71.8
SEGI_20304 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 1.7e-55 221.5 141 78.0
CAN.G198.33 Capsicum annuum HOM05D004765 ORTHO05D005900 1.6e-53 214.9 152 68.4
CAN.G1211.3 Capsicum annuum HOM05D004765 ORTHO05D005900 9.5e-51 205.7 147 70.7
CAN.G79.6 Capsicum annuum HOM05D004765 ORTHO05D005900 7.0e-46 189.5 189 56.1
CAN.G79.7 Capsicum annuum HOM05D004765 ORTHO05D005900 1.3e-44 185.3 117 76.1
TAR633G0557 Trochodendron aralioides HOM05D004765 ORTHO05D005900 2.6e-32 144.4 85 90.6
Lj1C257T9 Lonicera japonica HOM05D004765 ORTHO05D030006 2.3e-28 131.3 90 70.0
QL04p027443 Quercus lobata HOM05D004765 ORTHO05D030006 7.3e-27 126.3 83 79.5
SEGI_24377 Sequoiadendron giganteum HOM05D004765 ORTHO05D030006 6.2e-26 123.2 96 60.4
Sc12g0004650 Simmondsia chinensis HOM05D004765 ORTHO05D030006 1.2e-24 119.0 89 65.2
VMungo0251G2550 Vigna mungo HOM05D000107 ORTHO05D000001 1.2e-24 119.0 109 57.8
SEGI_19690 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 4.1e-22 110.5 89 60.7
Os12g0509400 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D296799 4.8e-10 70.5 55 61.8
Pp3c10_16910 Physcomitrium patens HOM05D004765 ORTHO05D315325 9.9e-08 62.8 107 35.5
Zm00001eb190390 Zea mays HOM05D002544 ORTHO05D007856 3.2e-06 57.8 300 23.3
VMungo0464G0759 Vigna mungo HOM05D004765 ORTHO05D005900 9.3e-06 56.2 53 50.9


User provided reference genes

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